Rh2AG656300

Cystinosin homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0001326
Physical Location & Seq
Reverse (-)
87285529 .. 87295318
9790 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG656300.1

Sequence Viewer

Length: 690 bp
ATGGAGCCACCAACCGAGCACCACATCAAGCGCTTCAAGTTCATTCGGCAAGTCCTTATGATCTCCAATCTCGCTCTCAGAGAGTCTGATTCCAGGTTACGAGATGGAGAAGAAGTTCCAACATTGATGGAGGGGAAGCCGCAATCCAAGACATACGTTGAGCCTATTGCATTGTATTTTACAACCCACTCGTCGGTGCTAATCAGGGTTGTGGCGCTGAGCATCGATTTTGTGCTGCTAAATTGGACGAAACACTCGTCATATCTCATTTACAACGCCTCTCTTTACTTCAGCTCTGCCGTTCATAAGCAATACTTTGAAAAGTACGGTTTCGGAGAGATGATACCTGTAGCTGCAAATGATGTTGCTTTCTCTGTTCATGCCGCTTTTGTAACATTAATTATCCTTCTCCAAATTGCAATCTATGAACGAGGAAGTCAGAAAGTATCCAAGATTGCCATTGGAATCGTCTTTGGTGTGTGGCTATTTGCTGCAGTTTGTTTCTTGGTGGCTCTGCCAACTCATTCTTGGCTTTGGCTCATCTCAATCTTCAAGTATATATATAAGATACAGTTACCTTTCATTTTTGTGCATTTGCAGTTTCATTTTAGTACTGTCAGTGGCAATTATGACAAAAATTTAGTTTTTGCTGCAGAGTTACACGATCATGATCTAGGAGCATGGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 map04142
Pfam Domains
Protein Families
PQ-loop

Protein Analysis

229

Amino Acids

26.29

Weight (kDa)

7.89

Isoelectric Point (pI)

32.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 140, 384
AcsI RAATTY 1 cut(s) 637
AcuI CTGAAG 1 cut(s) 274
AfaI GTAC 2 cut(s) 326, 613
AfeI AGCGCT 1 cut(s) 32
AfiI CCNNNNNNNGG 1 cut(s) 193
AgsI TTSAA 3 cut(s) 37, 320, 553
AjnI CCWGG 1 cut(s) 92
AloI GAACNNNNNNTCC 2 cut(s) 99, 131
AluBI AGCT 2 cut(s) 294, 353
AluI AGCT 2 cut(s) 294, 353
Alw21I GWGCWC 1 cut(s) 21
Aor51HI AGCGCT 1 cut(s) 32
ApeKI GCWGC 4 cut(s) 235, 353, 491, 650
ApoI RAATTY 1 cut(s) 637
ArsI GACNNNNNNTTYG 2 cut(s) 242, 274
AseI ATTAAT 1 cut(s) 398
Asp700I GAANNNNTTC 1 cut(s) 114
AspLEI GCGC 2 cut(s) 33, 217
Bbv12I GWGCWC 1 cut(s) 21
BbvI GCAGC 4 cut(s) 222, 340, 478, 637
BccI CCATC 2 cut(s) 98, 121
BceAI ACGGC 1 cut(s) 284
BciT130I CCWGG 1 cut(s) 94
BciVI GTATCC 1 cut(s) 457
BfaI CTAG 1 cut(s) 674
BfmI CTRYAG 3 cut(s) 348, 492, 651
BfoI RGCGCY 2 cut(s) 34, 218
BfuI GTATCC 1 cut(s) 457
BisI GCNGC 6 cut(s) 140, 236, 354, 384, 492, 651
BlpI GCTNAGC 1 cut(s) 218
BlsI GCNGC 6 cut(s) 141, 237, 355, 385, 493, 652
BmcAI AGTACT 1 cut(s) 613
Bme1390I CCNGG 1 cut(s) 94
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 94
BmsI GCATC 1 cut(s) 231
Bpu1102I GCTNAGC 1 cut(s) 218
Bsa29I ATCGAT 1 cut(s) 225
BsaBI GATNNNNATC 1 cut(s) 669
BsaXI ACNNNNNCTCC 2 cut(s) 99, 129
Bsc4I CCNNNNNNNGG 1 cut(s) 193
Bse8I GATNNNNATC 1 cut(s) 669
BseBI CCWGG 1 cut(s) 94
BseCI ATCGAT 1 cut(s) 225
BseJI GATNNNNATC 1 cut(s) 669
BseLI CCNNNNNNNGG 1 cut(s) 193
BseMII CTCAG 2 cut(s) 91, 209
BseXI GCAGC 4 cut(s) 222, 340, 478, 637
BshVI ATCGAT 1 cut(s) 225
BsiHKAI GWGCWC 1 cut(s) 21
BslI CCNNNNNNNGG 1 cut(s) 193
Bsp1286I GDGCHC 1 cut(s) 21
Bsp143I GATC 3 cut(s) 60, 664, 670
Bsp1720I GCTNAGC 1 cut(s) 218
BspACI CCGC 2 cut(s) 140, 384
BspCNI CTCAG 2 cut(s) 90, 210
BspDI ATCGAT 1 cut(s) 225
BspHI TCATGA 1 cut(s) 667
BspLI GGNNCC 1 cut(s) 6
BspMAI CTGCAG 2 cut(s) 496, 655
BssMI GATC 3 cut(s) 60, 664, 670
Bst2UI CCWGG 1 cut(s) 94
Bst4CI ACNGT 3 cut(s) 329, 573, 616
BstDEI CTNAG 2 cut(s) 77, 218
BstH2I RGCGCY 2 cut(s) 34, 218
BstHHI GCGC 2 cut(s) 33, 217
BstKTI GATC 3 cut(s) 63, 667, 673
BstMBI GATC 3 cut(s) 60, 664, 670
BstNI CCWGG 1 cut(s) 94
BstSCI CCNGG 1 cut(s) 92
BstSFI CTRYAG 3 cut(s) 348, 492, 651
BstV1I GCAGC 4 cut(s) 222, 340, 478, 637
Bsu15I ATCGAT 1 cut(s) 225
BsuI GTATCC 1 cut(s) 457
BsuTUI ATCGAT 1 cut(s) 225
BtsIMutI CAGTG 1 cut(s) 625
CciI TCATGA 1 cut(s) 667
CfoI GCGC 2 cut(s) 33, 217
ClaI ATCGAT 1 cut(s) 225
Csp6I GTAC 2 cut(s) 325, 612
CviAII CATG 3 cut(s) 380, 668, 681
CviJI RGCY 9 cut(s) 7, 139, 163, 294, 353, 484, 512, 532, 538
CviKI_1 RGCY 9 cut(s) 7, 139, 163, 294, 353, 484, 512, 532, 538
CviQI GTAC 2 cut(s) 325, 612
DdeI CTNAG 2 cut(s) 77, 218
DpnI GATC 3 cut(s) 62, 666, 672
DpnII GATC 3 cut(s) 60, 664, 670
Eco47III AGCGCT 1 cut(s) 32
Eco57I CTGAAG 1 cut(s) 274
EcoRII CCWGG 1 cut(s) 92
FaeI CATG 3 cut(s) 383, 671, 684
FalI AAGNNNNNCTT 2 cut(s) 299, 331
FatI CATG 3 cut(s) 379, 667, 680
Fnu4HI GCNGC 6 cut(s) 140, 236, 354, 384, 492, 651
Fsp4HI GCNGC 6 cut(s) 140, 236, 354, 384, 492, 651
FspBI CTAG 1 cut(s) 674
GlaI GCGC 2 cut(s) 32, 216
GluI GCNGC 6 cut(s) 140, 236, 354, 384, 492, 651
HaeII RGCGCY 2 cut(s) 34, 218
HhaI GCGC 2 cut(s) 33, 217
Hin1II CATG 3 cut(s) 383, 671, 684
Hin6I GCGC 2 cut(s) 31, 215
HinP1I GCGC 2 cut(s) 31, 215
HinfI GANTC 3 cut(s) 83, 89, 465
Hpy188I TCNGA 4 cut(s) 80, 88, 335, 441
Hpy188III TCNNGA 1 cut(s) 668
Hpy99I CGWCG 1 cut(s) 196
HpyAV CCTTC 1 cut(s) 416
HpyCH4III ACNGT 3 cut(s) 329, 573, 616
HpyCH4IV ACGT 1 cut(s) 156
HpyCH4V TGCA 7 cut(s) 170, 356, 419, 494, 592, 598, 653
HpyF3I CTNAG 2 cut(s) 77, 218
HpySE526I ACGT 1 cut(s) 156
Hsp92II CATG 3 cut(s) 383, 671, 684
HspAI GCGC 2 cut(s) 31, 215
Kzo9I GATC 3 cut(s) 60, 664, 670
LmnI GCTCC 2 cut(s) 4, 677
LpnPI CCDG 4 cut(s) 79, 106, 190, 360
Lsp1109I GCAGC 4 cut(s) 222, 340, 478, 637
LweI GCATC 1 cut(s) 231
MaeI CTAG 1 cut(s) 674
MaeII ACGT 1 cut(s) 156
MaeIII GTNAC 4 cut(s) 96, 391, 573, 657
MalI GATC 3 cut(s) 62, 666, 672
MboI GATC 3 cut(s) 60, 664, 670
MboII GAAGA 2 cut(s) 122, 541
MhlI GDGCHC 1 cut(s) 21
MluCI AATT 6 cut(s) 241, 399, 414, 625, 637, 685
MlyI GAGTC 1 cut(s) 92
MmeI TCCRAC 1 cut(s) 143
MnlI CCTC 3 cut(s) 124, 289, 425
MroXI GAANNNNTTC 1 cut(s) 114
MseI TTAA 2 cut(s) 398, 688
MslI CAYNNNNRTG 2 cut(s) 587, 666
MspR9I CCNGG 1 cut(s) 94
MvaI CCWGG 1 cut(s) 94
NdeII GATC 3 cut(s) 60, 664, 670
NlaIII CATG 3 cut(s) 383, 671, 684
NlaIV GGNNCC 1 cut(s) 6
PagI TCATGA 1 cut(s) 667
PcsI WCGNNNNNNNCGW 1 cut(s) 254
PdmI GAANNNNTTC 1 cut(s) 114
PfeI GAWTC 2 cut(s) 89, 465
PkrI GCNGC 6 cut(s) 141, 237, 355, 385, 493, 652
PleI GAGTC 1 cut(s) 91
PpsI GAGTC 1 cut(s) 91
PshBI ATTAAT 1 cut(s) 398
Psp6I CCWGG 1 cut(s) 92
PspGI CCWGG 1 cut(s) 92
PspN4I GGNNCC 1 cut(s) 6
PstI CTGCAG 2 cut(s) 496, 655
RsaI GTAC 2 cut(s) 326, 613
RsaNI GTAC 2 cut(s) 325, 612
RseI CAYNNNNRTG 2 cut(s) 587, 666
SaqAI TTAA 2 cut(s) 398, 688
SatI GCNGC 6 cut(s) 140, 236, 354, 384, 492, 651
Sau3AI GATC 3 cut(s) 60, 664, 670
ScaI AGTACT 1 cut(s) 613
SchI GAGTC 1 cut(s) 92
ScrFI CCNGG 1 cut(s) 94
SduI GDGCHC 1 cut(s) 21
SetI ASST 6 cut(s) 98, 159, 296, 349, 355, 580
SfaNI GCATC 1 cut(s) 231
SfcI CTRYAG 3 cut(s) 348, 492, 651
SmiMI CAYNNNNRTG 2 cut(s) 587, 666
Sse9I AATT 6 cut(s) 241, 399, 414, 625, 637, 685
SsiI CCGC 2 cut(s) 140, 384
SspMI CTAG 1 cut(s) 674
StyD4I CCNGG 1 cut(s) 92
TaaI ACNGT 3 cut(s) 329, 573, 616
TaiI ACGT 1 cut(s) 159
TaqI TCGA 1 cut(s) 225
TasI AATT 6 cut(s) 241, 399, 414, 625, 637, 685
TatI WGTACW 1 cut(s) 611
TauI GCSGC 2 cut(s) 142, 386
TfiI GAWTC 2 cut(s) 89, 465
Tru1I TTAA 2 cut(s) 398, 688
Tru9I TTAA 2 cut(s) 398, 688
TscAI CASTG 1 cut(s) 625
TseI GCWGC 4 cut(s) 235, 353, 491, 650
TspDTI ATGAA 6 cut(s) 31, 293, 368, 441, 571, 593
TspRI CASTG 1 cut(s) 625
VspI ATTAAT 1 cut(s) 398
XapI RAATTY 1 cut(s) 637
XcmI CCANNNNNNNNNTGG 1 cut(s) 525
XmnI GAANNNNTTC 1 cut(s) 114
XspI CTAG 1 cut(s) 674
ZrmI AGTACT 1 cut(s) 613
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.