Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001326

Physical Location & Seq

Genomic Coordinates Reverse (-)

1831181 .. 1833250

Gene Structure 2070 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00078560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGCGTCGTGGAATTCGATTCAGCTGGAGATCTCATACAGAGTTCTGGGGTGGTTGACTTTCACGTTTTGGGCCGTCGGCTTCTACCCTCAAGTATTCTTGAATTTCCGTCGAAAAAGTGTTGTGGGTCTGAGCATCGATTTTGTGGTGCTGAATTGGACTAAACACTCGTCGTATCTCATTTACAACGCCTCTCTTTACTTCAGCTCCGCCGTTCAGAAGCAGTACTTTGAAAAGTACGGTTTCGGAGAGATGCAGATGATACCTGTAGCTGCAAATGATGTTGCTTTCTCTGTTCATGCCGTTTTTGTAACATCAATTATCCTTTTCCAAATTGCAATCTATGAACGAGGAAGTCAGAAAGTATCCAAGATTGCCATTGGAATCGTCTTTGGTGTGTGGCTATTTGCTGCAGTTTGTTTCTTGGTGGCTCTGCCAACTCATTCTTGGCTTTGGCTCATCTCTATCTTCAACTCAATTCAAGTTTTTATGACAGTCATCAAATATACTCCCCAGGCATACATGAACTTCATAAGAAGGAGCACAGATGGATTAAGTATTTTCTTTATTCTACTTGATCTTTCTGGAGGAGTGGGAAGTTATGCACAAATGGCCGTGCAGTCTATTGATCAAGATTCTTGGGTGAACTTTTATGGAAACATAGGGAAGACACTGCTATCTTTGATATGTGTATCATTTGATCTTCTTTTCATTTGCCAACATTATGTTCTGTATCCTTCCAAGAAGGCATTGATATCTCCTAAAATGATCACCAGCAAGGAGGACGTGGAGCCCCTTGTCAGTTCTGATAATCACCGAGTGTCTGAAAATGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

PQ-loop

Protein Analysis

278

Amino Acids

31.63

Weight (kDa)

8.65

Isoelectric Point (pI)

36.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PQ-loop	PF04193	14 - 69	9.9e-16	PQ loop repeat
PQ-loop	PF04193	154 - 210	2e-14	PQ loop repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40670
fragaria_vesca	FvH4_6g52300 FvH4_6g52311 FvH4_6g52320 FvH4_6g52320 FvH4_6g52320 FvH4_6g52360
malus_domestica	MD09G1018800.v1.1 MD09G1018900.v1.1 MD17G1019200.v1.1 MD17G1019400.v1.1
prunus_persica	Prupe.3G298300_v2.0.a1 Prupe.3G298400_v2.0.a1
pyrus_communis	pycom111g01560 pycom111g01570 pycom17g01600 pycom17g01610
rosa_chinensis	RchiOBHm_Chr2g0173831 RchiOBHm_Chr2g0173881 RchiOBHm_Chr2g0173901 RchiOBHm_Chr2g0174021 RchiOBHm_Chr2g0174261
rosa_laevigata	RLG00000022232 RLG00000022233 RLG00000022236
rosa_multiflora	Rmu_co8240537.1_g000001 Rmu_sc0003188.1_g000020 Rmu_sc0003188.1_g000025 Rmu_sc0040252.1_g000001
rosa_roxburghii	Rroxscaffold_160G00433840 Rroxscaffold_2G00078530 Rroxscaffold_2G00078550 Rroxscaffold_2G00078560
rosa_rugosa	Rorug02G0573300 Rorug02G0573400 Rorug02G0573900
rosa_samantha	Rh2AG652500 Rh2AG652600 Rh2AG656300 Rh2BG663300 Rh2BG663700 Rh2BG664500 Rh2BG667500 Rh2CG627700 Rh2CG628300 Rh2CG628400 Rh2CG628900 Rh2DG678200 Rh2DG678600 Rh2DG678700
rosa_wichuraiana	Rw2G053560 Rw2G053600 Rw2G053610 Rw2G053650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	210
AcoI	YGGCCR	1 cut(s)	612
AcsI	RAATTY	2 cut(s)	13, 103
AcuI	CTGAAG	1 cut(s)	187
AcyI	GRCGYC	1 cut(s)	5
AdeI	CACNNNGTG	1 cut(s)	820
AfaI	GTAC	2 cut(s)	227, 239
AgsI	TTSAA	4 cut(s)	103, 233, 472, 482
AjiI	CACGTC	1 cut(s)	787
AjnI	CCWGG	1 cut(s)	513
AjuI	GAANNNNNNNTTGG	2 cut(s)	711, 743
AluBI	AGCT	3 cut(s)	25, 207, 272
AluI	AGCT	3 cut(s)	25, 207, 272
Alw21I	GWGCWC	1 cut(s)	545
AoxI	GGCC	2 cut(s)	72, 612
ApeKI	GCWGC	2 cut(s)	272, 410
ApoI	RAATTY	2 cut(s)	13, 103
AspS9I	GGNCC	1 cut(s)	72
AsuHPI	GGTGA	3 cut(s)	655, 763, 806
BanII	GRGCYC	1 cut(s)	795
BbsI	GAAGAC	1 cut(s)	674
Bbv12I	GWGCWC	1 cut(s)	545
BbvI	GCAGC	2 cut(s)	259, 397
BccI	CCATC	1 cut(s)	542
BceAI	ACGGC	4 cut(s)	59, 197, 287, 599
BciT130I	CCWGG	1 cut(s)	515
BciVI	GTATCC	2 cut(s)	376, 744
BclI	TGATCA	2 cut(s)	628, 768
BfaI	CTAG	1 cut(s)	835
BfmI	CTRYAG	2 cut(s)	267, 411
BfuI	GTATCC	2 cut(s)	376, 744
BglII	AGATCT	1 cut(s)	30
BisI	GCNGC	2 cut(s)	273, 411
BlsI	GCNGC	2 cut(s)	274, 412
BmcAI	AGTACT	1 cut(s)	227
Bme1390I	CCNGG	1 cut(s)	515
BmgBI	CACGTC	1 cut(s)	787
BmgT120I	GGNCC	1 cut(s)	72
BmiI	GGNNCC	1 cut(s)	792
BmrFI	CCNGG	1 cut(s)	515
BmsI	GCATC	2 cut(s)	144, 243
BpiI	GAAGAC	1 cut(s)	674
BpmI	CTGGAG	2 cut(s)	47, 606
BpuEI	CTTGAG	1 cut(s)	75
Bsa29I	ATCGAT	1 cut(s)	138
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	513
BsaXI	ACNNNNNCTCC	2 cut(s)	191, 221
BseBI	CCWGG	1 cut(s)	515
BseCI	ATCGAT	1 cut(s)	138
BseDI	CCNNGG	1 cut(s)	513
BseMII	CTCAG	1 cut(s)	122
BseRI	GAGGAG	1 cut(s)	603
BseXI	GCAGC	2 cut(s)	259, 397
BsgI	GTGCAG	1 cut(s)	638
BshFI	GGCC	2 cut(s)	74, 614
BshVI	ATCGAT	1 cut(s)	138
BsiHKAI	GWGCWC	1 cut(s)	545
BsnI	GGCC	2 cut(s)	74, 614
Bsp1286I	GDGCHC	2 cut(s)	545, 795
Bsp143I	GATC	5 cut(s)	30, 577, 628, 700, 768
BspACI	CCGC	1 cut(s)	210
BspANI	GGCC	2 cut(s)	74, 614
BspCNI	CTCAG	1 cut(s)	123
BspDI	ATCGAT	1 cut(s)	138
BspLI	GGNNCC	1 cut(s)	792
BspMAI	CTGCAG	1 cut(s)	415
BssECI	CCNNGG	1 cut(s)	513
BssMI	GATC	5 cut(s)	30, 577, 628, 700, 768
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	515
Bst4CI	ACNGT	2 cut(s)	242, 496
BstACI	GRCGYC	1 cut(s)	5
BstDEI	CTNAG	1 cut(s)	131
BstKTI	GATC	5 cut(s)	33, 580, 631, 703, 771
BstMBI	GATC	5 cut(s)	30, 577, 628, 700, 768
BstMWI	GCNNNNNNNGC	1 cut(s)	611
BstNI	CCWGG	1 cut(s)	515
BstSCI	CCNGG	1 cut(s)	513
BstSFI	CTRYAG	2 cut(s)	267, 411
BstV1I	GCAGC	2 cut(s)	259, 397
BstV2I	GAAGAC	1 cut(s)	674
BstX2I	RGATCY	1 cut(s)	30
BstYI	RGATCY	1 cut(s)	30
Bsu15I	ATCGAT	1 cut(s)	138
BsuI	GTATCC	2 cut(s)	376, 744
BsuRI	GGCC	2 cut(s)	74, 614
BsuTUI	ATCGAT	1 cut(s)	138
BtrI	CACGTC	1 cut(s)	787
BtsI	GCAGTG	1 cut(s)	671
BtsIMutI	CAGTG	1 cut(s)	671
Cfr13I	GGNCC	1 cut(s)	72
ClaI	ATCGAT	1 cut(s)	138
Csp6I	GTAC	2 cut(s)	226, 238
CviAII	CATG	2 cut(s)	299, 523
CviQI	GTAC	2 cut(s)	226, 238
DdeI	CTNAG	1 cut(s)	131
DpnI	GATC	5 cut(s)	32, 579, 630, 702, 770
DpnII	GATC	5 cut(s)	30, 577, 628, 700, 768
DraIII	CACNNNGTG	1 cut(s)	820
EaeI	YGGCCR	1 cut(s)	612
EciI	GGCGGA	1 cut(s)	199
Eco24I	GRGCYC	1 cut(s)	795
Eco32I	GATATC	1 cut(s)	756
Eco57I	CTGAAG	1 cut(s)	187
EcoRI	GAATTC	1 cut(s)	13
EcoRII	CCWGG	1 cut(s)	513
EcoRV	GATATC	1 cut(s)	756
EcoT38I	GRGCYC	1 cut(s)	795
FaeI	CATG	2 cut(s)	302, 526
FalI	AAGNNNNNCTT	2 cut(s)	212, 244
FatI	CATG	2 cut(s)	298, 522
FbaI	TGATCA	2 cut(s)	628, 768
Fnu4HI	GCNGC	2 cut(s)	273, 411
FriOI	GRGCYC	1 cut(s)	795
Fsp4HI	GCNGC	2 cut(s)	273, 411
FspBI	CTAG	1 cut(s)	835
GluI	GCNGC	2 cut(s)	273, 411
GsuI	CTGGAG	2 cut(s)	47, 606
HaeIII	GGCC	2 cut(s)	74, 614
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	302, 526
HincII	GTYRAC	1 cut(s)	57
HindII	GTYRAC	1 cut(s)	57
HinfI	GANTC	3 cut(s)	19, 384, 635
HphI	GGTGA	3 cut(s)	655, 763, 806
Hpy166II	GTNNAC	2 cut(s)	57, 646
Hpy188I	TCNGA	6 cut(s)	132, 219, 248, 360, 808, 826
Hpy188III	TCNNGA	3 cut(s)	100, 585, 632
Hpy8I	GTNNAC	2 cut(s)	57, 646
Hpy99I	CGWCG	4 cut(s)	10, 80, 114, 175
HpyAV	CCTTC	3 cut(s)	531, 739, 747
HpyCH4III	ACNGT	2 cut(s)	242, 496
HpyCH4IV	ACGT	2 cut(s)	65, 786
HpyCH4V	TGCA	6 cut(s)	256, 275, 338, 413, 605, 619
HpyF10VI	GCNNNNNNNGC	1 cut(s)	611
HpyF3I	CTNAG	1 cut(s)	131
HpySE526I	ACGT	2 cut(s)	65, 786
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	302, 526
Ksp22I	TGATCA	2 cut(s)	628, 768
Kzo9I	GATC	5 cut(s)	30, 577, 628, 700, 768
LmnI	GCTCC	3 cut(s)	212, 540, 790
LpnPI	CCDG	7 cut(s)	11, 32, 279, 500, 527, 570, 787
Lsp1109I	GCAGC	2 cut(s)	259, 397
LweI	GCATC	2 cut(s)	144, 243
MaeI	CTAG	1 cut(s)	835
MaeII	ACGT	2 cut(s)	65, 786
MaeIII	GTNAC	1 cut(s)	310
MalI	GATC	5 cut(s)	32, 579, 630, 702, 770
MboI	GATC	5 cut(s)	30, 577, 628, 700, 768
MboII	GAAGA	3 cut(s)	460, 679, 695
MflI	RGATCY	1 cut(s)	30
MhlI	GDGCHC	2 cut(s)	545, 795
MluCI	AATT	6 cut(s)	13, 103, 154, 318, 333, 477
MnlI	CCTC	5 cut(s)	99, 202, 344, 581, 775
MseI	TTAA	1 cut(s)	554
MspA1I	CMGCKG	1 cut(s)	25
MspR9I	CCNGG	1 cut(s)	515
MvaI	CCWGG	1 cut(s)	515
MwoI	GCNNNNNNNGC	1 cut(s)	611
NdeII	GATC	5 cut(s)	30, 577, 628, 700, 768
NlaIII	CATG	2 cut(s)	302, 526
NlaIV	GGNNCC	1 cut(s)	792
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PfeI	GAWTC	3 cut(s)	19, 384, 635
PkrI	GCNGC	2 cut(s)	274, 412
Psp6I	CCWGG	1 cut(s)	513
PspGI	CCWGG	1 cut(s)	513
PspN4I	GGNNCC	1 cut(s)	792
PspPI	GGNCC	1 cut(s)	72
PstI	CTGCAG	1 cut(s)	415
PsuI	RGATCY	1 cut(s)	30
PvuII	CAGCTG	1 cut(s)	25
RsaI	GTAC	2 cut(s)	227, 239
RsaNI	GTAC	2 cut(s)	226, 238
SaqAI	TTAA	1 cut(s)	554
SatI	GCNGC	2 cut(s)	273, 411
Sau3AI	GATC	5 cut(s)	30, 577, 628, 700, 768
Sau96I	GGNCC	1 cut(s)	72
ScaI	AGTACT	1 cut(s)	227
ScrFI	CCNGG	1 cut(s)	515
SduI	GDGCHC	2 cut(s)	545, 795
SetI	ASST	6 cut(s)	27, 68, 209, 268, 274, 789
SfaNI	GCATC	2 cut(s)	144, 243
SfcI	CTRYAG	2 cut(s)	267, 411
SmlI	CTYRAG	1 cut(s)	90
SmoI	CTYRAG	1 cut(s)	90
Sse9I	AATT	6 cut(s)	13, 103, 154, 318, 333, 477
SsiI	CCGC	1 cut(s)	210
SspMI	CTAG	1 cut(s)	835
StyD4I	CCNGG	1 cut(s)	513
TaaI	ACNGT	2 cut(s)	242, 496
TaiI	ACGT	2 cut(s)	68, 789
TaqI	TCGA	3 cut(s)	17, 112, 138
TasI	AATT	6 cut(s)	13, 103, 154, 318, 333, 477
TatI	WGTACW	1 cut(s)	225
TfiI	GAWTC	3 cut(s)	19, 384, 635
Tru1I	TTAA	1 cut(s)	554
Tru9I	TTAA	1 cut(s)	554
TscAI	CASTG	1 cut(s)	678
TseI	GCWGC	2 cut(s)	272, 410
TspDTI	ATGAA	5 cut(s)	287, 360, 520, 539, 700
TspGWI	ACGGA	1 cut(s)	98
TspRI	CASTG	1 cut(s)	678
XapI	RAATTY	2 cut(s)	13, 103
XcmI	CCANNNNNNNNNTGG	1 cut(s)	444
XspI	CTAG	1 cut(s)	835
ZrmI	AGTACT	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.