Rh2CG628300

Cystinosin homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0001326
Physical Location & Seq
Forward (+)
80184691 .. 80188448
3758 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG628300.1

Sequence Viewer

Length: 537 bp
ATGGCGCCAATCAAAAACCCCAACACAGCATTTAACGCATGCAAACAAGTCCTACATCTTTTTCTTCTCTCTATAAAGAAATTCAAGATTCCTATTTCCCTGGGATTTCCGCCGAGTGATCTTGAGAATCGGTCGGAACTGGAATATTCAGACGATGGCGTCGTGGAATTCGATTCAGCTGGAGATCACATACAGAGTTCTGGGGTGGTTGACTTTCACGTTTTGGGCCGTCGGCTTCTACCCTCAAGTGTTCTTGAATTTCCGTCGAAAAAGATGATACCTGTAGCTGCAAATGATGTTGCTTTCTCTGTTCATGCCGTTTTTGTAACATCAATTATCCTTTTCCAAATTGCAATCTATGAACGAGGAAGTCAGAAAGTATCCAAGATTGCCATTGGAATCGTCTTTGGTGTGTGGCTATTTGCTGCAGTTTGTTTCTTGGTGGCTCTGCCAACTCATTCTTGGCTTTGGCTCATCTCTATCTTCAACTCAATTCAAGTTTTTATGACAGTCATCAAATATACTCCCCAGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 map04142
Pfam Domains
Protein Families
PQ-loop

Protein Analysis

178

Amino Acids

19.75

Weight (kDa)

7.82

Isoelectric Point (pI)

39.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 158
AccB1I GGYRCC 1 cut(s) 4
AciI CCGC 1 cut(s) 110
AcsI RAATTY 3 cut(s) 80, 167, 257
AcyI GRCGYC 2 cut(s) 5, 159
AgsI TTSAA 4 cut(s) 85, 257, 487, 497
AjnI CCWGG 2 cut(s) 99, 528
AluBI AGCT 2 cut(s) 179, 287
AluI AGCT 2 cut(s) 179, 287
AoxI GGCC 1 cut(s) 226
ApeKI GCWGC 2 cut(s) 287, 425
ApoI RAATTY 3 cut(s) 80, 167, 257
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 1 cut(s) 226
BanI GGYRCC 1 cut(s) 4
BbvI GCAGC 2 cut(s) 274, 412
BccI CCATC 1 cut(s) 149
BceAI ACGGC 2 cut(s) 213, 302
BciT130I CCWGG 2 cut(s) 101, 530
BciVI GTATCC 1 cut(s) 391
BfmI CTRYAG 2 cut(s) 282, 426
BfoI RGCGCY 1 cut(s) 8
BfuI GTATCC 1 cut(s) 391
BisI GCNGC 2 cut(s) 288, 426
BlsI GCNGC 2 cut(s) 289, 427
Bme1390I CCNGG 2 cut(s) 101, 530
BmgT120I GGNCC 1 cut(s) 226
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 2 cut(s) 101, 530
BpmI CTGGAG 1 cut(s) 201
BpuEI CTTGAG 2 cut(s) 143, 229
BsaHI GRCGYC 2 cut(s) 5, 159
BsaJI CCNNGG 3 cut(s) 99, 100, 528
Bse1I ACTGG 1 cut(s) 144
BseBI CCWGG 2 cut(s) 101, 530
BseDI CCNNGG 3 cut(s) 99, 100, 528
BseNI ACTGG 1 cut(s) 144
BseXI GCAGC 2 cut(s) 274, 412
Bsh1285I CGRYCG 1 cut(s) 134
BshFI GGCC 1 cut(s) 228
BshNI GGYRCC 1 cut(s) 4
BsiEI CGRYCG 1 cut(s) 134
BsnI GGCC 1 cut(s) 228
Bsp143I GATC 2 cut(s) 118, 184
BspACI CCGC 1 cut(s) 110
BspANI GGCC 1 cut(s) 228
BspLI GGNNCC 1 cut(s) 6
BspMAI CTGCAG 1 cut(s) 430
BspT107I GGYRCC 1 cut(s) 4
BsrI ACTGG 1 cut(s) 144
BssECI CCNNGG 3 cut(s) 99, 100, 528
BssMI GATC 2 cut(s) 118, 184
BssNI GRCGYC 2 cut(s) 5, 159
Bst2UI CCWGG 2 cut(s) 101, 530
Bst4CI ACNGT 1 cut(s) 511
BstACI GRCGYC 2 cut(s) 5, 159
BstC8I GCNNGC 1 cut(s) 40
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 2 cut(s) 121, 187
BstMBI GATC 2 cut(s) 118, 184
BstMCI CGRYCG 1 cut(s) 134
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstNI CCWGG 2 cut(s) 101, 530
BstNSI RCATGY 1 cut(s) 42
BstSCI CCNGG 2 cut(s) 99, 528
BstSFI CTRYAG 2 cut(s) 282, 426
BstV1I GCAGC 2 cut(s) 274, 412
BsuI GTATCC 1 cut(s) 391
BsuRI GGCC 1 cut(s) 228
Cac8I GCNNGC 1 cut(s) 40
CfoI GCGC 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 226
CseI GACGC 1 cut(s) 148
CviAII CATG 2 cut(s) 39, 314
CviJI RGCY 8 cut(s) 179, 228, 235, 287, 418, 446, 466, 472
CviKI_1 RGCY 8 cut(s) 179, 228, 235, 287, 418, 446, 466, 472
DinI GGCGCC 1 cut(s) 6
DpnI GATC 2 cut(s) 120, 186
DpnII GATC 2 cut(s) 118, 184
DrdI GACNNNNNNGTC 1 cut(s) 158
DseDI GACNNNNNNGTC 1 cut(s) 158
EciI GGCGGA 1 cut(s) 99
EcoRI GAATTC 1 cut(s) 167
EcoRII CCWGG 2 cut(s) 99, 528
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
FaeI CATG 2 cut(s) 42, 317
FaiI YATR 7 cut(s) 40, 74, 191, 315, 360, 506, 522
FatI CATG 2 cut(s) 38, 313
Fnu4HI GCNGC 2 cut(s) 288, 426
Fsp4HI GCNGC 2 cut(s) 288, 426
GlaI GCGC 1 cut(s) 6
GluI GCNGC 2 cut(s) 288, 426
GsuI CTGGAG 1 cut(s) 201
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 1 cut(s) 228
HgaI GACGC 1 cut(s) 148
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 2 cut(s) 5, 159
Hin1II CATG 2 cut(s) 42, 317
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 1 cut(s) 211
HindII GTYRAC 1 cut(s) 211
HinfI GANTC 4 cut(s) 88, 127, 173, 399
Hpy166II GTNNAC 1 cut(s) 211
Hpy188I TCNGA 3 cut(s) 136, 151, 375
Hpy188III TCNNGA 3 cut(s) 85, 122, 254
Hpy8I GTNNAC 1 cut(s) 211
Hpy99I CGWCG 3 cut(s) 164, 234, 268
HpyCH4III ACNGT 1 cut(s) 511
HpyCH4IV ACGT 1 cut(s) 219
HpyCH4V TGCA 4 cut(s) 42, 290, 353, 428
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
HpySE526I ACGT 1 cut(s) 219
Hsp92I GRCGYC 2 cut(s) 5, 159
Hsp92II CATG 2 cut(s) 42, 317
HspAI GCGC 1 cut(s) 5
KasI GGCGCC 1 cut(s) 4
Kzo9I GATC 2 cut(s) 118, 184
LpnPI CCDG 7 cut(s) 86, 113, 125, 165, 186, 294, 515
Lsp1109I GCAGC 2 cut(s) 274, 412
MaeII ACGT 1 cut(s) 219
MaeIII GTNAC 1 cut(s) 325
MalI GATC 2 cut(s) 120, 186
MboI GATC 2 cut(s) 118, 184
MboII GAAGA 2 cut(s) 56, 475
MluCI AATT 6 cut(s) 80, 167, 257, 333, 348, 492
Mly113I GGCGCC 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 114
MnlI CCTC 2 cut(s) 253, 359
MseI TTAA 1 cut(s) 33
MspA1I CMGCKG 1 cut(s) 179
MspR9I CCNGG 2 cut(s) 101, 530
MvaI CCWGG 2 cut(s) 101, 530
MwoI GCNNNNNNNGC 1 cut(s) 35
NarI GGCGCC 1 cut(s) 5
NdeII GATC 2 cut(s) 118, 184
NlaIII CATG 2 cut(s) 42, 317
NlaIV GGNNCC 1 cut(s) 6
NmeAIII GCCGAG 1 cut(s) 138
NspI RCATGY 1 cut(s) 42
PaeI GCATGC 1 cut(s) 42
PasI CCCWGGG 1 cut(s) 100
PcsI WCGNNNNNNNCGW 2 cut(s) 159, 168
PfeI GAWTC 4 cut(s) 88, 127, 173, 399
PkrI GCNGC 2 cut(s) 289, 427
PluTI GGCGCC 1 cut(s) 8
Psp6I CCWGG 2 cut(s) 99, 528
PspGI CCWGG 2 cut(s) 99, 528
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 226
PstI CTGCAG 1 cut(s) 430
PvuII CAGCTG 1 cut(s) 179
SaqAI TTAA 1 cut(s) 33
SatI GCNGC 2 cut(s) 288, 426
Sau3AI GATC 2 cut(s) 118, 184
Sau96I GGNCC 1 cut(s) 226
ScrFI CCNGG 2 cut(s) 101, 530
SetI ASST 5 cut(s) 181, 222, 283, 289, 534
SfcI CTRYAG 2 cut(s) 282, 426
SfoI GGCGCC 1 cut(s) 6
SmlI CTYRAG 2 cut(s) 122, 244
SmoI CTYRAG 2 cut(s) 122, 244
SphI GCATGC 1 cut(s) 42
Sse9I AATT 6 cut(s) 80, 167, 257, 333, 348, 492
SsiI CCGC 1 cut(s) 110
SspDI GGCGCC 1 cut(s) 4
SspI AATATT 1 cut(s) 146
StyD4I CCNGG 2 cut(s) 99, 528
TaaI ACNGT 1 cut(s) 511
TaiI ACGT 1 cut(s) 222
TaqI TCGA 2 cut(s) 171, 266
TaqII GACCGA 1 cut(s) 120
TasI AATT 6 cut(s) 80, 167, 257, 333, 348, 492
TfiI GAWTC 4 cut(s) 88, 127, 173, 399
Tru1I TTAA 1 cut(s) 33
Tru9I TTAA 1 cut(s) 33
TseI GCWGC 2 cut(s) 287, 425
TspDTI ATGAA 2 cut(s) 302, 375
TspGWI ACGGA 1 cut(s) 252
XapI RAATTY 3 cut(s) 80, 167, 257
XceI RCATGY 1 cut(s) 42
XcmI CCANNNNNNNNNTGG 1 cut(s) 459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.