Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001326

Physical Location & Seq

Genomic Coordinates Forward (+)

89905920 .. 89909523

Gene Structure 3604 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG678600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGCGTCGTGGAATTCGATTCAGCTGGAGATCACATACAGAGTTCTGGGGTGGTTGACTTTCACGTTTTGGGCCGTCGGCTTCTACCCTCAAGTGTTCTTGAATTTCCGTCGAAAAAGCACTCGTCGTATCTCATTTACAACGCCACTCTCTACTTCAGCTCCGCCGCGCGTTCAGAAGCAGTACTTTGAAAAGTACGGTTTCGGAGAGATGATACCTGTAGCTGCAAATGATGTTGCTTTCTCTGTTCATGCCGTTTTTGTAACATCAATTATCCTTTTCCAAATTGCAATCTATGAACGAGGAAGTCAGAAAGTATCCAAGATTGCCATTGGAATCGTCTTTGGTGTGTGGCTATTTGCTGCAGTTTGTTTCTTGGTGGCTCTGCCAACTCATTCTTGGCTTTGGCTCATCTCTATCTTCAACTCAATTCAAGTTTTTATGACAGTCATCAAATATACTCCCCAGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

PQ-loop

Protein Analysis

157

Amino Acids

18.02

Weight (kDa)

10.0

Isoelectric Point (pI)

29.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PQ-loop	PF04193	14 - 49	1.4e-10	PQ loop repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40670
fragaria_vesca	FvH4_6g52300 FvH4_6g52311 FvH4_6g52320 FvH4_6g52320 FvH4_6g52320 FvH4_6g52360
malus_domestica	MD09G1018800.v1.1 MD09G1018900.v1.1 MD17G1019200.v1.1 MD17G1019400.v1.1
prunus_persica	Prupe.3G298300_v2.0.a1 Prupe.3G298400_v2.0.a1
pyrus_communis	pycom111g01560 pycom111g01570 pycom17g01600 pycom17g01610
rosa_chinensis	RchiOBHm_Chr2g0173831 RchiOBHm_Chr2g0173881 RchiOBHm_Chr2g0173901 RchiOBHm_Chr2g0174021 RchiOBHm_Chr2g0174261
rosa_laevigata	RLG00000022232 RLG00000022233 RLG00000022236
rosa_multiflora	Rmu_co8240537.1_g000001 Rmu_sc0003188.1_g000020 Rmu_sc0003188.1_g000025 Rmu_sc0040252.1_g000001
rosa_roxburghii	Rroxscaffold_160G00433840 Rroxscaffold_2G00078530 Rroxscaffold_2G00078550 Rroxscaffold_2G00078560
rosa_rugosa	Rorug02G0573300 Rorug02G0573400 Rorug02G0573900
rosa_samantha	Rh2AG652500 Rh2AG652600 Rh2AG656300 Rh2BG663300 Rh2BG663700 Rh2BG664500 Rh2BG667500 Rh2CG627700 Rh2CG628300 Rh2CG628400 Rh2CG628900 Rh2DG678200 Rh2DG678600 Rh2DG678700
rosa_wichuraiana	Rw2G053560 Rw2G053600 Rw2G053610 Rw2G053650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	169, 171
AciI	CCGC	2 cut(s)	164, 167
AcsI	RAATTY	2 cut(s)	13, 103
AcuI	CTGAAG	1 cut(s)	141
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	185, 197
AgsI	TTSAA	4 cut(s)	103, 191, 424, 434
AjnI	CCWGG	1 cut(s)	465
AluBI	AGCT	3 cut(s)	25, 161, 224
AluI	AGCT	3 cut(s)	25, 161, 224
AoxI	GGCC	1 cut(s)	72
ApeKI	GCWGC	2 cut(s)	224, 362
ApoI	RAATTY	2 cut(s)	13, 103
AspLEI	GCGC	1 cut(s)	171
AspS9I	GGNCC	1 cut(s)	72
BbvI	GCAGC	2 cut(s)	211, 349
BceAI	ACGGC	2 cut(s)	59, 239
BciT130I	CCWGG	1 cut(s)	467
BciVI	GTATCC	1 cut(s)	328
BfmI	CTRYAG	2 cut(s)	219, 363
BfuI	GTATCC	1 cut(s)	328
BisI	GCNGC	3 cut(s)	167, 225, 363
BlsI	GCNGC	3 cut(s)	168, 226, 364
BmcAI	AGTACT	1 cut(s)	185
Bme1390I	CCNGG	1 cut(s)	467
BmgT120I	GGNCC	1 cut(s)	72
BmrFI	CCNGG	1 cut(s)	467
BpmI	CTGGAG	1 cut(s)	47
BpuEI	CTTGAG	1 cut(s)	75
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	465
BsaXI	ACNNNNNCTCC	2 cut(s)	145, 175
BseBI	CCWGG	1 cut(s)	467
BseDI	CCNNGG	1 cut(s)	465
BseXI	GCAGC	2 cut(s)	211, 349
Bsh1236I	CGCG	2 cut(s)	169, 171
BshFI	GGCC	1 cut(s)	74
BsnI	GGCC	1 cut(s)	74
Bsp143I	GATC	1 cut(s)	30
BspACI	CCGC	2 cut(s)	164, 167
BspANI	GGCC	1 cut(s)	74
BspFNI	CGCG	2 cut(s)	169, 171
BspMAI	CTGCAG	1 cut(s)	367
BssECI	CCNNGG	1 cut(s)	465
BssMI	GATC	1 cut(s)	30
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	467
Bst4CI	ACNGT	2 cut(s)	200, 448
BstACI	GRCGYC	1 cut(s)	5
BstFNI	CGCG	2 cut(s)	169, 171
BstHHI	GCGC	1 cut(s)	171
BstKTI	GATC	1 cut(s)	33
BstMBI	GATC	1 cut(s)	30
BstNI	CCWGG	1 cut(s)	467
BstSCI	CCNGG	1 cut(s)	465
BstSFI	CTRYAG	2 cut(s)	219, 363
BstUI	CGCG	2 cut(s)	169, 171
BstV1I	GCAGC	2 cut(s)	211, 349
BsuI	GTATCC	1 cut(s)	328
BsuRI	GGCC	1 cut(s)	74
CfoI	GCGC	1 cut(s)	171
Cfr13I	GGNCC	1 cut(s)	72
Csp6I	GTAC	2 cut(s)	184, 196
CviAII	CATG	1 cut(s)	251
CviJI	RGCY	9 cut(s)	25, 74, 81, 161, 224, 355, 383, 403, 409
CviKI_1	RGCY	9 cut(s)	25, 74, 81, 161, 224, 355, 383, 403, 409
CviQI	GTAC	2 cut(s)	184, 196
DpnI	GATC	1 cut(s)	32
DpnII	GATC	1 cut(s)	30
EciI	GGCGGA	1 cut(s)	153
Eco57I	CTGAAG	1 cut(s)	141
EcoRI	GAATTC	1 cut(s)	13
EcoRII	CCWGG	1 cut(s)	465
FaeI	CATG	1 cut(s)	254
FaiI	YATR	5 cut(s)	37, 252, 297, 443, 459
FalI	AAGNNNNNCTT	2 cut(s)	170, 202
FatI	CATG	1 cut(s)	250
Fnu4HI	GCNGC	3 cut(s)	167, 225, 363
Fsp4HI	GCNGC	3 cut(s)	167, 225, 363
GlaI	GCGC	1 cut(s)	170
GluI	GCNGC	3 cut(s)	167, 225, 363
GsuI	CTGGAG	1 cut(s)	47
HaeIII	GGCC	1 cut(s)	74
HhaI	GCGC	1 cut(s)	171
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	254
Hin6I	GCGC	1 cut(s)	169
HinP1I	GCGC	1 cut(s)	169
HincII	GTYRAC	1 cut(s)	57
HindII	GTYRAC	1 cut(s)	57
HinfI	GANTC	2 cut(s)	19, 336
Hpy166II	GTNNAC	1 cut(s)	57
Hpy188I	TCNGA	3 cut(s)	177, 206, 312
Hpy188III	TCNNGA	1 cut(s)	100
Hpy8I	GTNNAC	1 cut(s)	57
Hpy99I	CGWCG	4 cut(s)	10, 80, 114, 129
HpyCH4III	ACNGT	2 cut(s)	200, 448
HpyCH4IV	ACGT	1 cut(s)	65
HpyCH4V	TGCA	3 cut(s)	227, 290, 365
HpySE526I	ACGT	1 cut(s)	65
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	254
HspAI	GCGC	1 cut(s)	169
Kzo9I	GATC	1 cut(s)	30
LmnI	GCTCC	1 cut(s)	166
LpnPI	CCDG	4 cut(s)	11, 32, 231, 452
Lsp1109I	GCAGC	2 cut(s)	211, 349
MaeII	ACGT	1 cut(s)	65
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	1 cut(s)	32
MboI	GATC	1 cut(s)	30
MboII	GAAGA	1 cut(s)	412
MluCI	AATT	5 cut(s)	13, 103, 270, 285, 429
MnlI	CCTC	2 cut(s)	99, 296
MspA1I	CMGCKG	1 cut(s)	25
MspR9I	CCNGG	1 cut(s)	467
MvaI	CCWGG	1 cut(s)	467
MvnI	CGCG	2 cut(s)	169, 171
NdeII	GATC	1 cut(s)	30
NlaIII	CATG	1 cut(s)	254
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PfeI	GAWTC	2 cut(s)	19, 336
PkrI	GCNGC	3 cut(s)	168, 226, 364
Psp6I	CCWGG	1 cut(s)	465
PspGI	CCWGG	1 cut(s)	465
PspPI	GGNCC	1 cut(s)	72
PstI	CTGCAG	1 cut(s)	367
PvuII	CAGCTG	1 cut(s)	25
RsaI	GTAC	2 cut(s)	185, 197
RsaNI	GTAC	2 cut(s)	184, 196
SatI	GCNGC	3 cut(s)	167, 225, 363
Sau3AI	GATC	1 cut(s)	30
Sau96I	GGNCC	1 cut(s)	72
ScaI	AGTACT	1 cut(s)	185
ScrFI	CCNGG	1 cut(s)	467
SetI	ASST	6 cut(s)	27, 68, 163, 220, 226, 471
SfcI	CTRYAG	2 cut(s)	219, 363
SmlI	CTYRAG	1 cut(s)	90
SmoI	CTYRAG	1 cut(s)	90
Sse9I	AATT	5 cut(s)	13, 103, 270, 285, 429
SsiI	CCGC	2 cut(s)	164, 167
StyD4I	CCNGG	1 cut(s)	465
TaaI	ACNGT	2 cut(s)	200, 448
TaiI	ACGT	1 cut(s)	68
TaqI	TCGA	2 cut(s)	17, 112
TasI	AATT	5 cut(s)	13, 103, 270, 285, 429
TatI	WGTACW	1 cut(s)	183
TauI	GCSGC	1 cut(s)	169
TfiI	GAWTC	2 cut(s)	19, 336
TseI	GCWGC	2 cut(s)	224, 362
TspDTI	ATGAA	2 cut(s)	239, 312
TspGWI	ACGGA	1 cut(s)	98
XapI	RAATTY	2 cut(s)	13, 103
XcmI	CCANNNNNNNNNTGG	1 cut(s)	396
ZrmI	AGTACT	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.