Rw2G053610

Cystinosin homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0001326
Physical Location & Seq
Forward (+)
81348522 .. 81351067
2546 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G053610.1

Sequence Viewer

Length: 834 bp
ATGGCGTCTTGGAATTCAGTCCCACTCGAAATCACATACGAAGTTCTGGGTTGGTTGGCCTTCATTTCATGGTCCATCAGCTTTTACCCACAAGTCATCTTAAACTTTCGCAGAAAAAGTGTTATTGGGTTGAACTTCGATTTCGTGCTACTGAATTTAACCAAGCACTCGTCGTATCTCATTTACAACGCCACTCTCTACTTCAGCTCCGCCGTTCAAAAACAGTACTTGGAGAAATATGGACTCGGAGAGATGATACCGGTAGCAGCAAATGATGTTGCGTTTTCTATTCATGCTGTTTTGCTGACAGCAATTACCTTGTTCCAGGTTGTGATCTACGAACGTGGAAGTCAGAAGGTGTCCAGGATTTCCATTGGAATTGTTGCTGCCGTTTGGTTAGGTGCTGCAGTTTGTTTCTTCGTAGCTTTGCCAACCCATTCTTGGCTCTGGCTCATTTCCATTTTCAACTCAATTCAAGTTTTTATGACAGCCATCAAATATATTCCTCAGGCAATCTTCAACTTCACGCGGAAGAGCACAGTTGGGTTTAGCATTGGCAACATTTTACTCGACTTTTCTGGAGGGGTGGCAAATTATGCACAAATGGGCGTGCAGTCCATAGATCAAGGTTCTTGGGTGAACTTTTATGGAAATATAGGGAAGACACTGCTGTCTTTGATATCAATCTTCTTTGACCTTCTCTTCATGGGTCAGCATTTCATACTGTATCCTGCCAAGGGAGCAACAATCTCTTCTAAAATAAGCAAGGAGGAGAGCGCGGAGCCACTCGTTAATGAAATGGGTTATAATTTGCTTACCATTCATCAGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 map04142
Pfam Domains
Protein Families
PQ-loop

Protein Analysis

277

Amino Acids

31.01

Weight (kDa)

8.84

Isoelectric Point (pI)

30.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PQ-loop PF04193 14 - 69 2.5e-18 PQ loop repeat
PQ-loop PF04193 152 - 204 2.6e-14 PQ loop repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 807
AasI GACNNNNNNGTC 1 cut(s) 670
AccII CGCG 2 cut(s) 529, 779
AciI CCGC 3 cut(s) 210, 529, 779
AcsI RAATTY 2 cut(s) 13, 154
AcuI CTGAAG 1 cut(s) 187
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 227
AfiI CCNNNNNNNGG 2 cut(s) 441, 737
AgeI ACCGGT 1 cut(s) 259
AgsI TTSAA 5 cut(s) 133, 218, 466, 476, 520
AjnI CCWGG 2 cut(s) 324, 362
AluBI AGCT 3 cut(s) 81, 207, 425
AluI AGCT 3 cut(s) 81, 207, 425
Alw21I GWGCWC 1 cut(s) 539
AoxI GGCC 1 cut(s) 57
ApeKI GCWGC 3 cut(s) 266, 386, 404
ApoI RAATTY 2 cut(s) 13, 154
AsiGI ACCGGT 1 cut(s) 259
AspLEI GCGC 1 cut(s) 779
AspS9I GGNCC 1 cut(s) 72
AsuHPI GGTGA 1 cut(s) 649
AvaII GGWCC 1 cut(s) 72
AxyI CCTNAGG 1 cut(s) 507
BbsI GAAGAC 1 cut(s) 668
Bbv12I GWGCWC 1 cut(s) 539
BbvI GCAGC 3 cut(s) 278, 373, 391
BccI CCATC 2 cut(s) 83, 500
BceAI ACGGC 2 cut(s) 197, 374
BciT130I CCWGG 2 cut(s) 326, 364
BciVI GTATCC 1 cut(s) 738
BfmI CTRYAG 1 cut(s) 405
BfuI GTATCC 1 cut(s) 738
BisI GCNGC 3 cut(s) 267, 387, 405
BlsI GCNGC 3 cut(s) 268, 388, 406
BmcAI AGTACT 1 cut(s) 227
Bme1390I CCNGG 2 cut(s) 326, 364
Bme18I GGWCC 1 cut(s) 72
BmgT120I GGNCC 1 cut(s) 72
BmiI GGNNCC 1 cut(s) 783
BmrFI CCNGG 2 cut(s) 326, 364
BpiI GAAGAC 1 cut(s) 668
BpmI CTGGAG 1 cut(s) 600
BsaBI GATNNNNATC 1 cut(s) 683
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 735
BsaWI WCCGGW 1 cut(s) 259
BsaXI ACNNNNNCTCC 2 cut(s) 191, 221
Bsc4I CCNNNNNNNGG 2 cut(s) 441, 737
Bse118I RCCGGY 1 cut(s) 259
Bse21I CCTNAGG 1 cut(s) 507
Bse8I GATNNNNATC 1 cut(s) 683
BseBI CCWGG 2 cut(s) 326, 364
BseDI CCNNGG 1 cut(s) 735
BseJI GATNNNNATC 1 cut(s) 683
BseLI CCNNNNNNNGG 2 cut(s) 441, 737
BseMII CTCAG 1 cut(s) 521
BseRI GAGGAG 1 cut(s) 785
BseXI GCAGC 3 cut(s) 278, 373, 391
BsgI GTGCAG 1 cut(s) 632
Bsh1236I CGCG 2 cut(s) 529, 779
BshFI GGCC 1 cut(s) 59
BshTI ACCGGT 1 cut(s) 259
BsiHKAI GWGCWC 1 cut(s) 539
BsiSI CCGG 1 cut(s) 260
BslFI GGGAC 1 cut(s) 5
BslI CCNNNNNNNGG 2 cut(s) 441, 737
BsmFI GGGAC 1 cut(s) 5
BsnI GGCC 1 cut(s) 59
Bsp1286I GDGCHC 1 cut(s) 539
Bsp143I GATC 2 cut(s) 333, 622
BspACI CCGC 3 cut(s) 210, 529, 779
BspANI GGCC 1 cut(s) 59
BspCNI CTCAG 1 cut(s) 520
BspFNI CGCG 2 cut(s) 529, 779
BspLI GGNNCC 1 cut(s) 783
BspMAI CTGCAG 1 cut(s) 409
BspQI GCTCTTC 1 cut(s) 527
BsrFI RCCGGY 1 cut(s) 259
BssAI RCCGGY 1 cut(s) 259
BssECI CCNNGG 1 cut(s) 735
BssMI GATC 2 cut(s) 333, 622
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 735
Bst2UI CCWGG 2 cut(s) 326, 364
Bst4CI ACNGT 3 cut(s) 225, 541, 726
Bst6I CTCTTC 3 cut(s) 527, 707, 757
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 596
BstC8I GCNNGC 1 cut(s) 611
BstDEI CTNAG 1 cut(s) 507
BstFNI CGCG 2 cut(s) 529, 779
BstHHI GCGC 1 cut(s) 779
BstKTI GATC 2 cut(s) 336, 625
BstMBI GATC 2 cut(s) 333, 622
BstMWI GCNNNNNNNGC 2 cut(s) 596, 740
BstNI CCWGG 2 cut(s) 326, 364
BstSCI CCNGG 2 cut(s) 324, 362
BstSFI CTRYAG 1 cut(s) 405
BstUI CGCG 2 cut(s) 529, 779
BstV1I GCAGC 3 cut(s) 278, 373, 391
BstV2I GAAGAC 1 cut(s) 668
Bsu36I CCTNAGG 1 cut(s) 507
BsuI GTATCC 1 cut(s) 738
BsuRI GGCC 1 cut(s) 59
BtsI GCAGTG 1 cut(s) 665
BtsIMutI CAGTG 1 cut(s) 665
Cac8I GCNNGC 1 cut(s) 611
CfoI GCGC 1 cut(s) 779
Cfr10I RCCGGY 1 cut(s) 259
Cfr13I GGNCC 1 cut(s) 72
Csp6I GTAC 1 cut(s) 226
CspAI ACCGGT 1 cut(s) 259
CviAII CATG 3 cut(s) 69, 293, 706
CviJI RGCY 8 cut(s) 59, 81, 207, 425, 445, 451, 491, 784
CviKI_1 RGCY 8 cut(s) 59, 81, 207, 425, 445, 451, 491, 784
CviQI GTAC 1 cut(s) 226
DdeI CTNAG 1 cut(s) 507
DpnI GATC 2 cut(s) 335, 624
DpnII GATC 2 cut(s) 333, 622
DrdI GACNNNNNNGTC 1 cut(s) 670
DseDI GACNNNNNNGTC 1 cut(s) 670
Eam1104I CTCTTC 3 cut(s) 527, 707, 757
EarI CTCTTC 3 cut(s) 527, 707, 757
EciI GGCGGA 1 cut(s) 199
Eco130I CCWWGG 1 cut(s) 735
Eco32I GATATC 1 cut(s) 681
Eco47I GGWCC 1 cut(s) 72
Eco57I CTGAAG 1 cut(s) 187
Eco81I CCTNAGG 1 cut(s) 507
EcoRI GAATTC 1 cut(s) 13
EcoRII CCWGG 2 cut(s) 324, 362
EcoRV GATATC 1 cut(s) 681
EcoT14I CCWWGG 1 cut(s) 735
ErhI CCWWGG 1 cut(s) 735
FaeI CATG 3 cut(s) 72, 296, 709
FaqI GGGAC 1 cut(s) 5
FatI CATG 3 cut(s) 68, 292, 705
Fnu4HI GCNGC 3 cut(s) 267, 387, 405
Fsp4HI GCNGC 3 cut(s) 267, 387, 405
GlaI GCGC 1 cut(s) 778
GluI GCNGC 3 cut(s) 267, 387, 405
GsuI CTGGAG 1 cut(s) 600
HaeIII GGCC 1 cut(s) 59
HapII CCGG 1 cut(s) 260
HhaI GCGC 1 cut(s) 779
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 3 cut(s) 72, 296, 709
Hin6I GCGC 1 cut(s) 777
HinP1I GCGC 1 cut(s) 777
HinfI GANTC 1 cut(s) 243
HpaII CCGG 1 cut(s) 260
HphI GGTGA 1 cut(s) 649
Hpy166II GTNNAC 1 cut(s) 640
Hpy188I TCNGA 3 cut(s) 248, 354, 828
Hpy188III TCNNGA 1 cut(s) 579
Hpy8I GTNNAC 1 cut(s) 640
Hpy99I CGWCG 1 cut(s) 175
HpyAV CCTTC 3 cut(s) 70, 349, 707
HpyCH4III ACNGT 3 cut(s) 225, 541, 726
HpyCH4IV ACGT 1 cut(s) 343
HpyCH4V TGCA 3 cut(s) 407, 599, 613
HpyF10VI GCNNNNNNNGC 2 cut(s) 596, 740
HpyF3I CTNAG 1 cut(s) 507
HpySE526I ACGT 1 cut(s) 343
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 3 cut(s) 72, 296, 709
HspAI GCGC 1 cut(s) 777
Kzo9I GATC 2 cut(s) 333, 622
LguI GCTCTTC 1 cut(s) 527
LmnI GCTCC 3 cut(s) 212, 740, 781
Lsp1109I GCAGC 3 cut(s) 278, 373, 391
MaeII ACGT 1 cut(s) 343
MalI GATC 2 cut(s) 335, 624
MboI GATC 2 cut(s) 333, 622
MboII GAAGA 7 cut(s) 409, 508, 544, 673, 679, 694, 744
MhlI GDGCHC 1 cut(s) 539
MluCI AATT 7 cut(s) 13, 154, 312, 378, 471, 592, 808
MlyI GAGTC 1 cut(s) 237
MnlI CCTC 3 cut(s) 516, 575, 763
MseI TTAA 3 cut(s) 101, 158, 792
MspI CCGG 1 cut(s) 260
MspR9I CCNGG 2 cut(s) 326, 364
MvaI CCWGG 2 cut(s) 326, 364
MvnI CGCG 2 cut(s) 529, 779
MwoI GCNNNNNNNGC 2 cut(s) 596, 740
NdeII GATC 2 cut(s) 333, 622
NlaIII CATG 3 cut(s) 72, 296, 709
NlaIV GGNNCC 1 cut(s) 783
PciSI GCTCTTC 1 cut(s) 527
PfoI TCCNGGA 1 cut(s) 362
PinAI ACCGGT 1 cut(s) 259
PkrI GCNGC 3 cut(s) 268, 388, 406
PleI GAGTC 1 cut(s) 237
PpsI GAGTC 1 cut(s) 237
PsiI TTATAA 1 cut(s) 807
Psp6I CCWGG 2 cut(s) 324, 362
PspGI CCWGG 2 cut(s) 324, 362
PspN4I GGNNCC 1 cut(s) 783
PspPI GGNCC 1 cut(s) 72
PstI CTGCAG 1 cut(s) 409
RsaI GTAC 1 cut(s) 227
RsaNI GTAC 1 cut(s) 226
SapI GCTCTTC 1 cut(s) 527
SaqAI TTAA 3 cut(s) 101, 158, 792
SatI GCNGC 3 cut(s) 267, 387, 405
Sau3AI GATC 2 cut(s) 333, 622
Sau96I GGNCC 1 cut(s) 72
ScaI AGTACT 1 cut(s) 227
SchI GAGTC 1 cut(s) 237
ScrFI CCNGG 2 cut(s) 326, 364
SduI GDGCHC 1 cut(s) 539
SfcI CTRYAG 1 cut(s) 405
SinI GGWCC 1 cut(s) 72
Sse9I AATT 7 cut(s) 13, 154, 312, 378, 471, 592, 808
SsiI CCGC 3 cut(s) 210, 529, 779
StyD4I CCNGG 2 cut(s) 324, 362
StyI CCWWGG 1 cut(s) 735
TaaI ACNGT 3 cut(s) 225, 541, 726
TaiI ACGT 1 cut(s) 346
TaqI TCGA 3 cut(s) 27, 138, 570
TasI AATT 7 cut(s) 13, 154, 312, 378, 471, 592, 808
TatI WGTACW 1 cut(s) 225
Tru1I TTAA 3 cut(s) 101, 158, 792
Tru9I TTAA 3 cut(s) 101, 158, 792
TscAI CASTG 1 cut(s) 672
TseI GCWGC 3 cut(s) 266, 386, 404
TspDTI ATGAA 7 cut(s) 52, 57, 281, 694, 709, 810, 812
TspRI CASTG 1 cut(s) 672
VpaK11BI GGWCC 1 cut(s) 72
XapI RAATTY 2 cut(s) 13, 154
XcmI CCANNNNNNNNNTGG 1 cut(s) 438
ZrmI AGTACT 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.