Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001326

Physical Location & Seq

Genomic Coordinates Forward (+)

69944749 .. 69945507

Gene Structure 759 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0573900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGAATAGAAGCAACAAGAATCTGAAATTGGTAGATTGGCTTGTTTGCAACTCAATATACGAACTCGAGCCAGCAGCATTCACTGTAGAGCCACGGATAGTACCAATAGGACCACTTTTAGCTAGCAGCCGCCTTGGCAACTCAGCAGGCAGCTTGTGGCCACAAGACTCAACTTGCTTACAGTGGTTGGATGAACAACCACCCTGCTCAGTCATCTATGTTGCATTTGGAAGCTTCACACTTTTTGATCAAACCCAATTCCAAGAACTGGCTTTGGCTCTTGAATTGTCCAATAGGCCATTCCTCTGGGTTGTGAGGCCAGACATCTCTGAAGGTACTCGCTACCCAGAAGGATATGAAGAAAGAGTAGGCTCTCAAGGGTTGATGGTGGGATGGGCCCCACAACAGAATGTTCTTTCCCATCCTTCGGTTGCTTGCTTCCTAAGTCACTGTGGGTGGAACTCTACAATGGAAGGTGTAAGCAACGGGGTTCCTTTCTTGTGCTGGCCATACTTTGCAGACCAGTTCATTAACGAGACCTACATATGTGATGTTTGGAAAGTGGGAGTGAGGTTTGATAAGAACAAGAGTGGGATCGTCACGAAAGGAGAAATCAAGGACAAGGTGGAACAGCTTCTTGGAGATGAAAATTATAAAGCAAGGGCTTCCAAACTCAAGGAAATGGCCGTGACTAATATCAAAGAAGGTGGCCAATCGAGCATGAACTTTAAGAATTTCTTTGAATGGATGCAGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

PQ-loop

Protein Analysis

252

Amino Acids

28.46

Weight (kDa)

5.09

Isoelectric Point (pI)

38.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	71 - 226	1e-22	UDP-glucoronosyl and UDP-glucosyl transferase
EryCIII-like_C	PF06722	130 - 230	4.8e-07	Erythromycin biosynthesis protein CIII-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40670
fragaria_vesca	FvH4_6g52300 FvH4_6g52311 FvH4_6g52320 FvH4_6g52320 FvH4_6g52320 FvH4_6g52360
malus_domestica	MD09G1018800.v1.1 MD09G1018900.v1.1 MD17G1019200.v1.1 MD17G1019400.v1.1
prunus_persica	Prupe.3G298300_v2.0.a1 Prupe.3G298400_v2.0.a1
pyrus_communis	pycom111g01560 pycom111g01570 pycom17g01600 pycom17g01610
rosa_chinensis	RchiOBHm_Chr2g0173831 RchiOBHm_Chr2g0173881 RchiOBHm_Chr2g0173901 RchiOBHm_Chr2g0174021 RchiOBHm_Chr2g0174261
rosa_laevigata	RLG00000022232 RLG00000022233 RLG00000022236
rosa_multiflora	Rmu_co8240537.1_g000001 Rmu_sc0003188.1_g000020 Rmu_sc0003188.1_g000025 Rmu_sc0040252.1_g000001
rosa_roxburghii	Rroxscaffold_160G00433840 Rroxscaffold_2G00078530 Rroxscaffold_2G00078550 Rroxscaffold_2G00078560
rosa_rugosa	Rorug02G0573300 Rorug02G0573400 Rorug02G0573900
rosa_samantha	Rh2AG652500 Rh2AG652600 Rh2AG656300 Rh2BG663300 Rh2BG663700 Rh2BG664500 Rh2BG667500 Rh2CG627700 Rh2CG628300 Rh2CG628400 Rh2CG628900 Rh2DG678200 Rh2DG678600 Rh2DG678700
rosa_wichuraiana	Rw2G053560 Rw2G053600 Rw2G053610 Rw2G053650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	654
AccB7I	CCANNNNNTGG	1 cut(s)	268
AciI	CCGC	1 cut(s)	130
AclWI	GGATC	1 cut(s)	602
AcoI	YGGCCR	4 cut(s)	158, 506, 684, 709
AcsI	RAATTY	1 cut(s)	733
AcuI	CTGAAG	1 cut(s)	351
AfaI	GTAC	2 cut(s)	102, 337
AfiI	CCNNNNNNNGG	2 cut(s)	268, 427
AgsI	TTSAA	2 cut(s)	284, 743
AjuI	GAANNNNNNNTTGG	6 cut(s)	11, 43, 284, 316, 621, 653
AluBI	AGCT	4 cut(s)	122, 153, 234, 634
AluI	AGCT	4 cut(s)	122, 153, 234, 634
Alw26I	GTCTC	1 cut(s)	530
AlwI	GGATC	1 cut(s)	602
Ama87I	CYCGRG	1 cut(s)	65
AoxI	GGCC	7 cut(s)	158, 296, 317, 396, 506, 684, 709
ApaI	GGGCCC	1 cut(s)	400
ApeKI	GCWGC	3 cut(s)	74, 126, 150
ApoI	RAATTY	1 cut(s)	733
Asp700I	GAANNNNTTC	1 cut(s)	633
AspS9I	GGNCC	3 cut(s)	110, 396, 397
AsuNHI	GCTAGC	1 cut(s)	122
AvaI	CYCGRG	1 cut(s)	65
AvaII	GGWCC	1 cut(s)	110
BaeGI	GKGCMC	1 cut(s)	400
BalI	TGGCCA	3 cut(s)	160, 508, 711
BanII	GRGCYC	1 cut(s)	400
BbvI	GCAGC	3 cut(s)	86, 138, 162
BccI	CCATC	3 cut(s)	379, 387, 429
BceAI	ACGGC	1 cut(s)	671
BclI	TGATCA	1 cut(s)	247
BcoDI	GTCTC	1 cut(s)	530
BfaI	CTAG	1 cut(s)	123
BfmI	CTRYAG	1 cut(s)	84
BglI	GCCNNNNNGGC	1 cut(s)	135
BisI	GCNGC	4 cut(s)	75, 127, 130, 151
BlsI	GCNGC	4 cut(s)	76, 128, 131, 152
Bme18I	GGWCC	1 cut(s)	110
BmeT110I	CYCGRG	1 cut(s)	65
BmgT120I	GGNCC	3 cut(s)	110, 396, 397
BmiI	GGNNCC	3 cut(s)	398, 399, 492
BmsI	GCATC	1 cut(s)	738
BmtI	GCTAGC	1 cut(s)	126
BpuEI	CTTGAG	2 cut(s)	360, 659
BsaI	GGTCTC	1 cut(s)	530
BsaJI	CCNNGG	2 cut(s)	92, 133
Bsc4I	CCNNNNNNNGG	2 cut(s)	268, 427
Bse1I	ACTGG	2 cut(s)	273, 523
BseDI	CCNNGG	2 cut(s)	92, 133
BseGI	GGATG	4 cut(s)	196, 398, 421, 753
BseLI	CCNNNNNNNGG	2 cut(s)	268, 427
BseMII	CTCAG	2 cut(s)	156, 222
BseNI	ACTGG	2 cut(s)	273, 523
BseSI	GKGCMC	1 cut(s)	400
BseXI	GCAGC	3 cut(s)	86, 138, 162
BshFI	GGCC	7 cut(s)	160, 298, 319, 398, 508, 686, 711
BsiHKCI	CYCGRG	1 cut(s)	65
BslI	CCNNNNNNNGG	2 cut(s)	268, 427
BsmAI	GTCTC	1 cut(s)	530
BsmI	GAATGC	1 cut(s)	77
BsnI	GGCC	7 cut(s)	160, 298, 319, 398, 508, 686, 711
Bso31I	GGTCTC	1 cut(s)	530
BsoBI	CYCGRG	1 cut(s)	65
Bsp120I	GGGCCC	1 cut(s)	396
Bsp1286I	GDGCHC	1 cut(s)	400
Bsp143I	GATC	2 cut(s)	247, 594
BspACI	CCGC	1 cut(s)	130
BspANI	GGCC	7 cut(s)	160, 298, 319, 398, 508, 686, 711
BspCNI	CTCAG	2 cut(s)	155, 221
BspLI	GGNNCC	3 cut(s)	398, 399, 492
BspOI	GCTAGC	1 cut(s)	126
BspPI	GGATC	1 cut(s)	602
BspTNI	GGTCTC	1 cut(s)	530
BsrI	ACTGG	2 cut(s)	273, 523
BssECI	CCNNGG	2 cut(s)	92, 133
BssMI	GATC	2 cut(s)	247, 594
BssT1I	CCWWGG	1 cut(s)	133
Bst4CI	ACNGT	3 cut(s)	85, 183, 452
BstC8I	GCNNGC	5 cut(s)	72, 124, 148, 436, 506
BstDEI	CTNAG	3 cut(s)	142, 208, 443
BstDSI	CCRYGG	1 cut(s)	92
BstF5I	GGATG	4 cut(s)	196, 398, 421, 753
BstKTI	GATC	2 cut(s)	250, 597
BstMAI	GTCTC	1 cut(s)	530
BstMBI	GATC	2 cut(s)	247, 594
BstMWI	GCNNNNNNNGC	2 cut(s)	135, 717
BstSFI	CTRYAG	1 cut(s)	84
BstSLI	GKGCMC	1 cut(s)	400
BstV1I	GCAGC	3 cut(s)	86, 138, 162
BstXI	CCANNNNNNTGG	1 cut(s)	306
BsuRI	GGCC	7 cut(s)	160, 298, 319, 398, 508, 686, 711
BtgI	CCRYGG	1 cut(s)	92
BtsCI	GGATG	4 cut(s)	196, 398, 421, 753
BtsIMutI	CAGTG	3 cut(s)	81, 188, 448
Cac8I	GCNNGC	5 cut(s)	72, 124, 148, 436, 506
Cfr13I	GGNCC	3 cut(s)	110, 396, 397
Csp6I	GTAC	2 cut(s)	101, 336
CspCI	CAANNNNNGTGG	2 cut(s)	688, 723
CviAII	CATG	1 cut(s)	721
CviQI	GTAC	2 cut(s)	101, 336
DdeI	CTNAG	3 cut(s)	142, 208, 443
DpnI	GATC	2 cut(s)	249, 596
DpnII	GATC	2 cut(s)	247, 594
EaeI	YGGCCR	4 cut(s)	158, 506, 684, 709
Eco130I	CCWWGG	1 cut(s)	133
Eco24I	GRGCYC	1 cut(s)	400
Eco31I	GGTCTC	1 cut(s)	530
Eco47I	GGWCC	1 cut(s)	110
Eco57I	CTGAAG	1 cut(s)	351
Eco88I	CYCGRG	1 cut(s)	65
EcoO109I	RGGNCCY	1 cut(s)	397
EcoT14I	CCWWGG	1 cut(s)	133
EcoT38I	GRGCYC	1 cut(s)	400
ErhI	CCWWGG	1 cut(s)	133
FaeI	CATG	1 cut(s)	724
FaiI	YATR	9 cut(s)	58, 219, 357, 511, 545, 547, 654, 722, 757
FalI	AAGNNNNNCTT	2 cut(s)	722, 754
FatI	CATG	1 cut(s)	720
FauNDI	CATATG	1 cut(s)	545
FbaI	TGATCA	1 cut(s)	247
Fnu4HI	GCNGC	4 cut(s)	75, 127, 130, 151
FokI	GGATG	3 cut(s)	203, 405, 408
FriOI	GRGCYC	1 cut(s)	400
Fsp4HI	GCNGC	4 cut(s)	75, 127, 130, 151
FspBI	CTAG	1 cut(s)	123
GluI	GCNGC	4 cut(s)	75, 127, 130, 151
HaeIII	GGCC	7 cut(s)	160, 298, 319, 398, 508, 686, 711
Hin1II	CATG	1 cut(s)	724
HindIII	AAGCTT	1 cut(s)	232
HinfI	GANTC	2 cut(s)	19, 167
Hpy188I	TCNGA	2 cut(s)	24, 331
Hpy188III	TCNNGA	2 cut(s)	281, 601
HpyAV	CCTTC	5 cut(s)	326, 344, 435, 467, 698
HpyCH4III	ACNGT	3 cut(s)	85, 183, 452
HpyCH4V	TGCA	4 cut(s)	48, 224, 518, 751
HpyF10VI	GCNNNNNNNGC	2 cut(s)	135, 717
HpyF3I	CTNAG	3 cut(s)	142, 208, 443
Hsp92II	CATG	1 cut(s)	724
Ksp22I	TGATCA	1 cut(s)	247
Kzo9I	GATC	2 cut(s)	247, 594
LpnPI	CCDG	9 cut(s)	84, 132, 217, 254, 292, 333, 360, 490, 536
Lsp1109I	GCAGC	3 cut(s)	86, 138, 162
LweI	GCATC	1 cut(s)	738
MaeI	CTAG	1 cut(s)	123
MaeIII	GTNAC	3 cut(s)	446, 598, 688
MalI	GATC	2 cut(s)	249, 596
MboI	GATC	2 cut(s)	247, 594
MboII	GAAGA	1 cut(s)	371
MhlI	GDGCHC	1 cut(s)	400
MlsI	TGGCCA	3 cut(s)	160, 508, 711
MluCI	AATT	5 cut(s)	26, 257, 284, 649, 733
MluNI	TGGCCA	3 cut(s)	160, 508, 711
MlyI	GAGTC	1 cut(s)	161
MmeI	TCCRAC	1 cut(s)	168
MnlI	CCTC	3 cut(s)	309, 314, 564
Mox20I	TGGCCA	3 cut(s)	160, 508, 711
MroXI	GAANNNNTTC	1 cut(s)	633
MscI	TGGCCA	3 cut(s)	160, 508, 711
MseI	TTAA	2 cut(s)	531, 729
Msp20I	TGGCCA	3 cut(s)	160, 508, 711
Mva1269I	GAATGC	1 cut(s)	77
MwoI	GCNNNNNNNGC	2 cut(s)	135, 717
NdeI	CATATG	1 cut(s)	545
NdeII	GATC	2 cut(s)	247, 594
NheI	GCTAGC	1 cut(s)	122
NlaIII	CATG	1 cut(s)	724
NlaIV	GGNNCC	3 cut(s)	398, 399, 492
NmuCI	GTSAC	3 cut(s)	446, 598, 688
PaeR7I	CTCGAG	1 cut(s)	65
PctI	GAATGC	1 cut(s)	77
PdmI	GAANNNNTTC	1 cut(s)	633
PfeI	GAWTC	1 cut(s)	19
PflMI	CCANNNNNTGG	1 cut(s)	268
PkrI	GCNGC	4 cut(s)	76, 128, 131, 152
PleI	GAGTC	1 cut(s)	161
PpsI	GAGTC	1 cut(s)	161
PsiI	TTATAA	1 cut(s)	654
PspN4I	GGNNCC	3 cut(s)	398, 399, 492
PspOMI	GGGCCC	1 cut(s)	396
PspPI	GGNCC	3 cut(s)	110, 396, 397
PspXI	VCTCGAGB	1 cut(s)	65
RsaI	GTAC	2 cut(s)	102, 337
RsaNI	GTAC	2 cut(s)	101, 336
SaqAI	TTAA	2 cut(s)	531, 729
SatI	GCNGC	4 cut(s)	75, 127, 130, 151
Sau3AI	GATC	2 cut(s)	247, 594
Sau96I	GGNCC	3 cut(s)	110, 396, 397
SchI	GAGTC	1 cut(s)	161
SduI	GDGCHC	1 cut(s)	400
SfaNI	GCATC	1 cut(s)	738
SfcI	CTRYAG	1 cut(s)	84
Sfr274I	CTCGAG	1 cut(s)	65
SinI	GGWCC	1 cut(s)	110
SlaI	CTCGAG	1 cut(s)	65
SmlI	CTYRAG	3 cut(s)	65, 375, 674
SmoI	CTYRAG	3 cut(s)	65, 375, 674
Sse9I	AATT	5 cut(s)	26, 257, 284, 649, 733
SsiI	CCGC	1 cut(s)	130
SspMI	CTAG	1 cut(s)	123
StyI	CCWWGG	1 cut(s)	133
TaaI	ACNGT	3 cut(s)	85, 183, 452
TaqI	TCGA	2 cut(s)	66, 716
TasI	AATT	5 cut(s)	26, 257, 284, 649, 733
TauI	GCSGC	1 cut(s)	132
TfiI	GAWTC	1 cut(s)	19
Tru1I	TTAA	2 cut(s)	531, 729
Tru9I	TTAA	2 cut(s)	531, 729
TscAI	CASTG	3 cut(s)	88, 188, 455
TseFI	GTSAC	3 cut(s)	446, 598, 688
TseI	GCWGC	3 cut(s)	74, 126, 150
Tsp45I	GTSAC	3 cut(s)	446, 598, 688
TspDTI	ATGAA	6 cut(s)	17, 207, 372, 517, 660, 737
TspGWI	ACGGA	1 cut(s)	109
TspRI	CASTG	3 cut(s)	88, 188, 455
Van91I	CCANNNNNTGG	1 cut(s)	268
VpaK11BI	GGWCC	1 cut(s)	110
XapI	RAATTY	1 cut(s)	733
XhoI	CTCGAG	1 cut(s)	65
XmnI	GAANNNNTTC	1 cut(s)	633
XspI	CTAG	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.