FvH4_6g52320

Cystinosin homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001326
Physical Location & Seq
Forward (+)
38567130 .. 38569716
2587 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g52320.t4

Sequence Viewer

Length: 828 bp
ATGGCGTCGTGGAATTCAGTTCCGCTAGAAATCACATACCAAGTTCTGGGATGGTTGGCTTTTATTTCATGGTCCATCAGCTTTTACCCACAAGTCATCTTAAATTACCGCAGAAAAAGTGTTATTGGGTTGAACTTCGATTTCGTGGTGCTGAATCTGACAAAGCACTCGTCGTATCTCATTTACAACGCCACCCTCTACTTCAGCTCCGCCGTTCAGAAACAGTACTTGGAGAAATATGGCCTCGGAGAGATGATACCTGTAGCAGCGAATGATGTTGCCTTTTCTATTCATGCTGTTTTGCTGACAGCAATTACCTTGTTCCAGATTGTGATTTACGAACGTGGAACTCAGAAGGTGTCCAGGATTTCCATTGGAATCGTTGGAGCCGTTTGGTTAGGTGCTGCAGTTTGTTTCTTCGTAGCTTTGCCAACCCATTCTTGGCTCTGGCTCATTTCCATTTTCAACTCAATTCAAGTTTTTATGACAGCCATCAAATATATTCCGCAGGCAATCTTCAACTTCACACGGAAGAGCACAATTGGGTTTAGCATTGGCAACATTTTACTTGACTTTTCTGGAGGGGTGGCAAATTATGCACAAATGGCAGTGCAGTCCATAGATCAAGATTCTTGGGTGAACTTTTATGGAAATATAGGGAAGACACTGCTGTCTTTGATATCTATATTCTTTGACCTTCTCTTCATGGGTCAGCATTTCGTGCTGTATCCTGCCAAGGGAGCACTGATCTCTCCTAAAAAAATTAAGGAAGAGAGCGCGGAGCCACTCGTTAAGTCGTCTGATGATCCAGTATCTGAAAATGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 map04142
Pfam Domains
Protein Families
PQ-loop

Protein Analysis

276

Amino Acids

30.77

Weight (kDa)

8.5

Isoelectric Point (pI)

32.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PQ-loop PF04193 70 - 126 3.3e-15 PQ loop repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 670
AccB7I CCANNNNNTGG 1 cut(s) 46
AccII CGCG 1 cut(s) 779
AciI CCGC 5 cut(s) 23, 109, 210, 506, 779
AclWI GGATC 1 cut(s) 800
AcsI RAATTY 1 cut(s) 13
AcuI CTGAAG 1 cut(s) 187
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 227
AfiI CCNNNNNNNGG 3 cut(s) 46, 441, 737
AgsI TTSAA 4 cut(s) 133, 466, 476, 520
AjnI CCWGG 1 cut(s) 362
AjuI GAANNNNNNNTTGG 2 cut(s) 212, 244
AluBI AGCT 3 cut(s) 81, 207, 425
AluI AGCT 3 cut(s) 81, 207, 425
Alw21I GWGCWC 2 cut(s) 539, 745
AlwI GGATC 1 cut(s) 800
AlwNI CAGNNNCTG 1 cut(s) 815
AoxI GGCC 1 cut(s) 241
ApeKI GCWGC 2 cut(s) 266, 404
ApoI RAATTY 1 cut(s) 13
ArsI GACNNNNNNTTYG 2 cut(s) 155, 187
AspLEI GCGC 1 cut(s) 779
AspS9I GGNCC 1 cut(s) 72
AsuHPI GGTGA 1 cut(s) 649
AvaII GGWCC 1 cut(s) 72
BbsI GAAGAC 1 cut(s) 668
Bbv12I GWGCWC 2 cut(s) 539, 745
BbvI GCAGC 2 cut(s) 278, 391
BccI CCATC 3 cut(s) 45, 83, 500
BceAI ACGGC 2 cut(s) 197, 374
BciT130I CCWGG 1 cut(s) 364
BciVI GTATCC 1 cut(s) 738
BfaI CTAG 1 cut(s) 26
BfmI CTRYAG 2 cut(s) 261, 405
BfuI GTATCC 1 cut(s) 738
BisI GCNGC 2 cut(s) 267, 405
BlsI GCNGC 2 cut(s) 268, 406
BmcAI AGTACT 1 cut(s) 227
Bme1390I CCNGG 1 cut(s) 364
Bme18I GGWCC 1 cut(s) 72
BmgT120I GGNCC 1 cut(s) 72
BmiI GGNNCC 2 cut(s) 388, 783
BmrFI CCNGG 1 cut(s) 364
BpiI GAAGAC 1 cut(s) 668
BpmI CTGGAG 1 cut(s) 600
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 2 cut(s) 244, 735
BsaXI ACNNNNNCTCC 2 cut(s) 191, 221
Bsc4I CCNNNNNNNGG 3 cut(s) 46, 441, 737
Bse1I ACTGG 1 cut(s) 809
BseBI CCWGG 1 cut(s) 364
BseDI CCNNGG 2 cut(s) 244, 735
BseGI GGATG 1 cut(s) 56
BseLI CCNNNNNNNGG 3 cut(s) 46, 441, 737
BseMII CTCAG 1 cut(s) 365
BseNI ACTGG 1 cut(s) 809
BseXI GCAGC 2 cut(s) 278, 391
BsgI GTGCAG 1 cut(s) 632
Bsh1236I CGCG 1 cut(s) 779
BshFI GGCC 1 cut(s) 243
BsiHKAI GWGCWC 2 cut(s) 539, 745
BslI CCNNNNNNNGG 3 cut(s) 46, 441, 737
BsnI GGCC 1 cut(s) 243
Bsp1286I GDGCHC 2 cut(s) 539, 745
Bsp143I GATC 3 cut(s) 622, 747, 805
BspACI CCGC 5 cut(s) 23, 109, 210, 506, 779
BspANI GGCC 1 cut(s) 243
BspCNI CTCAG 1 cut(s) 364
BspFNI CGCG 1 cut(s) 779
BspLI GGNNCC 2 cut(s) 388, 783
BspMAI CTGCAG 1 cut(s) 409
BspPI GGATC 1 cut(s) 800
BspQI GCTCTTC 1 cut(s) 527
BsrI ACTGG 1 cut(s) 809
BssECI CCNNGG 2 cut(s) 244, 735
BssMI GATC 3 cut(s) 622, 747, 805
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 735
Bst2UI CCWGG 1 cut(s) 364
Bst4CI ACNGT 1 cut(s) 225
Bst6I CTCTTC 3 cut(s) 527, 707, 765
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 2 cut(s) 596, 721
BstC8I GCNNGC 1 cut(s) 510
BstDEI CTNAG 1 cut(s) 351
BstF5I GGATG 1 cut(s) 56
BstFNI CGCG 1 cut(s) 779
BstHHI GCGC 1 cut(s) 779
BstKTI GATC 3 cut(s) 625, 750, 808
BstMBI GATC 3 cut(s) 622, 747, 805
BstMWI GCNNNNNNNGC 4 cut(s) 596, 605, 721, 740
BstNI CCWGG 1 cut(s) 364
BstSCI CCNGG 1 cut(s) 362
BstSFI CTRYAG 2 cut(s) 261, 405
BstUI CGCG 1 cut(s) 779
BstV1I GCAGC 2 cut(s) 278, 391
BstV2I GAAGAC 1 cut(s) 668
BsuI GTATCC 1 cut(s) 738
BsuRI GGCC 1 cut(s) 243
BtsCI GGATG 1 cut(s) 56
BtsI GCAGTG 2 cut(s) 615, 665
BtsIMutI CAGTG 3 cut(s) 615, 665, 743
Cac8I GCNNGC 1 cut(s) 510
CaiI CAGNNNCTG 1 cut(s) 815
CfoI GCGC 1 cut(s) 779
Cfr13I GGNCC 1 cut(s) 72
Csp6I GTAC 1 cut(s) 226
CviAII CATG 3 cut(s) 69, 293, 706
CviQI GTAC 1 cut(s) 226
DdeI CTNAG 1 cut(s) 351
DpnI GATC 3 cut(s) 624, 749, 807
DpnII GATC 3 cut(s) 622, 747, 805
DrdI GACNNNNNNGTC 1 cut(s) 670
DseDI GACNNNNNNGTC 1 cut(s) 670
Eam1104I CTCTTC 3 cut(s) 527, 707, 765
EarI CTCTTC 3 cut(s) 527, 707, 765
EciI GGCGGA 1 cut(s) 199
Eco130I CCWWGG 1 cut(s) 735
Eco32I GATATC 1 cut(s) 681
Eco47I GGWCC 1 cut(s) 72
Eco57I CTGAAG 1 cut(s) 187
EcoRI GAATTC 1 cut(s) 13
EcoRII CCWGG 1 cut(s) 362
EcoRV GATATC 1 cut(s) 681
EcoT14I CCWWGG 1 cut(s) 735
ErhI CCWWGG 1 cut(s) 735
FaeI CATG 3 cut(s) 72, 296, 709
FatI CATG 3 cut(s) 68, 292, 705
Fnu4HI GCNGC 2 cut(s) 267, 405
FokI GGATG 1 cut(s) 63
Fsp4HI GCNGC 2 cut(s) 267, 405
FspBI CTAG 1 cut(s) 26
GlaI GCGC 1 cut(s) 778
GluI GCNGC 2 cut(s) 267, 405
GsuI CTGGAG 1 cut(s) 600
HaeIII GGCC 1 cut(s) 243
HhaI GCGC 1 cut(s) 779
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 3 cut(s) 72, 296, 709
Hin6I GCGC 1 cut(s) 777
HinP1I GCGC 1 cut(s) 777
HinfI GANTC 3 cut(s) 154, 378, 629
HphI GGTGA 1 cut(s) 649
Hpy166II GTNNAC 1 cut(s) 640
Hpy188I TCNGA 6 cut(s) 159, 219, 248, 354, 802, 817
Hpy188III TCNNGA 3 cut(s) 325, 579, 626
Hpy8I GTNNAC 1 cut(s) 640
Hpy99I CGWCG 2 cut(s) 10, 175
HpyAV CCTTC 2 cut(s) 349, 707
HpyCH4III ACNGT 1 cut(s) 225
HpyCH4IV ACGT 1 cut(s) 343
HpyCH4V TGCA 3 cut(s) 407, 599, 613
HpyF10VI GCNNNNNNNGC 4 cut(s) 596, 605, 721, 740
HpyF3I CTNAG 1 cut(s) 351
HpySE526I ACGT 1 cut(s) 343
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 3 cut(s) 72, 296, 709
HspAI GCGC 1 cut(s) 777
Kzo9I GATC 3 cut(s) 622, 747, 805
LguI GCTCTTC 1 cut(s) 527
LmnI GCTCC 4 cut(s) 212, 386, 740, 781
Lsp1109I GCAGC 2 cut(s) 278, 391
MaeI CTAG 1 cut(s) 26
MaeII ACGT 1 cut(s) 343
MalI GATC 3 cut(s) 624, 749, 807
MboI GATC 3 cut(s) 622, 747, 805
MboII GAAGA 6 cut(s) 409, 508, 544, 673, 694, 782
MfeI CAATTG 1 cut(s) 540
MhlI GDGCHC 2 cut(s) 539, 745
MluCI AATT 7 cut(s) 13, 103, 312, 471, 540, 592, 762
MmeI TCCRAC 1 cut(s) 364
MnlI CCTC 3 cut(s) 206, 254, 575
MseI TTAA 3 cut(s) 101, 765, 792
MspR9I CCNGG 1 cut(s) 364
MunI CAATTG 1 cut(s) 540
MvaI CCWGG 1 cut(s) 364
MvnI CGCG 1 cut(s) 779
MwoI GCNNNNNNNGC 4 cut(s) 596, 605, 721, 740
NdeII GATC 3 cut(s) 622, 747, 805
NlaIII CATG 3 cut(s) 72, 296, 709
NlaIV GGNNCC 2 cut(s) 388, 783
PciSI GCTCTTC 1 cut(s) 527
PcsI WCGNNNNNNNCGW 1 cut(s) 387
PfeI GAWTC 3 cut(s) 154, 378, 629
PflMI CCANNNNNTGG 1 cut(s) 46
PfoI TCCNGGA 1 cut(s) 362
PkrI GCNGC 2 cut(s) 268, 406
Psp6I CCWGG 1 cut(s) 362
PspGI CCWGG 1 cut(s) 362
PspN4I GGNNCC 2 cut(s) 388, 783
PspPI GGNCC 1 cut(s) 72
PstI CTGCAG 1 cut(s) 409
PstNI CAGNNNCTG 1 cut(s) 815
RsaI GTAC 1 cut(s) 227
RsaNI GTAC 1 cut(s) 226
SapI GCTCTTC 1 cut(s) 527
SaqAI TTAA 3 cut(s) 101, 765, 792
SatI GCNGC 2 cut(s) 267, 405
Sau3AI GATC 3 cut(s) 622, 747, 805
Sau96I GGNCC 1 cut(s) 72
ScaI AGTACT 1 cut(s) 227
ScrFI CCNGG 1 cut(s) 364
SduI GDGCHC 2 cut(s) 539, 745
SetI ASST 9 cut(s) 83, 209, 262, 320, 346, 360, 403, 427, 699
SfcI CTRYAG 2 cut(s) 261, 405
SinI GGWCC 1 cut(s) 72
Sse9I AATT 7 cut(s) 13, 103, 312, 471, 540, 592, 762
SsiI CCGC 5 cut(s) 23, 109, 210, 506, 779
SspMI CTAG 1 cut(s) 26
StyD4I CCNGG 1 cut(s) 362
StyI CCWWGG 1 cut(s) 735
TaaI ACNGT 1 cut(s) 225
TaiI ACGT 1 cut(s) 346
TaqI TCGA 1 cut(s) 138
TasI AATT 7 cut(s) 13, 103, 312, 471, 540, 592, 762
TatI WGTACW 1 cut(s) 225
TfiI GAWTC 3 cut(s) 154, 378, 629
Tru1I TTAA 3 cut(s) 101, 765, 792
Tru9I TTAA 3 cut(s) 101, 765, 792
TscAI CASTG 3 cut(s) 615, 672, 750
TseI GCWGC 2 cut(s) 266, 404
TspDTI ATGAA 3 cut(s) 57, 281, 694
TspGWI ACGGA 1 cut(s) 544
TspRI CASTG 3 cut(s) 615, 672, 750
Van91I CCANNNNNTGG 1 cut(s) 46
VpaK11BI GGWCC 1 cut(s) 72
XapI RAATTY 1 cut(s) 13
XcmI CCANNNNNNNNNTGG 1 cut(s) 438
XspI CTAG 1 cut(s) 26
ZrmI AGTACT 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.