Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001326

Physical Location & Seq

Genomic Coordinates Forward (+)

38579553 .. 38582084

Gene Structure 2532 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g52360.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGCGTCATGGAATTCAACTCCGATGGAAGTGACATACGAAGTTCTGGGATGGATAGCTTTCGTGTCTTGGTCCATTAGCTTCTACCCTCAAGTCATCTTGAATTTCCGGAGGAAAAGTGTTGTGGGGTTGAACTTCGATTTTGTGGTACTGAATCTGATAAAGCACTCTTCATATCTGATTTACAATGCCACTCTCTACTTTAGCTCCGCAGTTCAAAAGCAATACTTTCACAAGTATGGCTCCAAACAGATGATACCTGTGGCAGCAAACGATGTGGCATTCTCTTCTCATGCTGTTTTATTGACTGCACTGACCCTGATTCAAATTGCAATCTATGAACGTGGAAATCAGAAGGTGACGAAGATTTCCATTGGAATCGTTGTTGCTGTGTGGCTAAGTGCTGCAGTTTGCTTTTTCATAGCTTTGTCAAACCACTCTTGGCTTTGGCTCATTTCCGTTTTCAACTTAATTCAAGTCTGTATGACAGCCATCAAATACATTCCTCAGGCAATCATGAACTTCATGCGAAAGAGCACTGATGGGTTCAGCATTGGCAACATTTTACTTGATTTTACTGGAGGCCTCACAAATTATGCACAAATGGCTGTGCAGTCTATAGATCAACATTCTTGGGTGAACTTCTATGGAAATATAGGAAAGACACTTCTCTCTTTGATCTCAATATTCTTCGACCTTCTATTCATGTGTCAACATTTCCTACTGTATCCCGCCAAGAAAGCACAGCAAATAGCCCCCAATGGCAGTACGAGTGACGAAAGAACAGGGGCTATGGGCAAATCTCCTGATCATCATCACCCAGTACAGCCGGAGGTTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

PQ-loop

Protein Analysis

281

Amino Acids

31.5

Weight (kDa)

9.04

Isoelectric Point (pI)

27.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PQ-loop	PF04193	14 - 69	1.5e-18	PQ loop repeat
PQ-loop	PF04193	152 - 208	4.2e-16	PQ loop repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40670
fragaria_vesca	FvH4_6g52300 FvH4_6g52311 FvH4_6g52320 FvH4_6g52320 FvH4_6g52320 FvH4_6g52360
malus_domestica	MD09G1018800.v1.1 MD09G1018900.v1.1 MD17G1019200.v1.1 MD17G1019400.v1.1
prunus_persica	Prupe.3G298300_v2.0.a1 Prupe.3G298400_v2.0.a1
pyrus_communis	pycom111g01560 pycom111g01570 pycom17g01600 pycom17g01610
rosa_chinensis	RchiOBHm_Chr2g0173831 RchiOBHm_Chr2g0173881 RchiOBHm_Chr2g0173901 RchiOBHm_Chr2g0174021 RchiOBHm_Chr2g0174261
rosa_laevigata	RLG00000022232 RLG00000022233 RLG00000022236
rosa_multiflora	Rmu_co8240537.1_g000001 Rmu_sc0003188.1_g000020 Rmu_sc0003188.1_g000025 Rmu_sc0040252.1_g000001
rosa_roxburghii	Rroxscaffold_160G00433840 Rroxscaffold_2G00078530 Rroxscaffold_2G00078550 Rroxscaffold_2G00078560
rosa_rugosa	Rorug02G0573300 Rorug02G0573400 Rorug02G0573900
rosa_samantha	Rh2AG652500 Rh2AG652600 Rh2AG656300 Rh2BG663300 Rh2BG663700 Rh2BG664500 Rh2BG667500 Rh2CG627700 Rh2CG628300 Rh2CG628400 Rh2CG628900 Rh2DG678200 Rh2DG678600 Rh2DG678700
rosa_wichuraiana	Rw2G053560 Rw2G053600 Rw2G053610 Rw2G053650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	108
AciI	CCGC	2 cut(s)	210, 732
AcsI	RAATTY	2 cut(s)	13, 103
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	3 cut(s)	150, 769, 825
AgsI	TTSAA	7 cut(s)	18, 103, 133, 218, 326, 466, 476
AluBI	AGCT	4 cut(s)	59, 81, 207, 425
AluI	AGCT	4 cut(s)	59, 81, 207, 425
Alw21I	GWGCWC	1 cut(s)	539
Aor13HI	TCCGGA	1 cut(s)	108
AoxI	GGCC	1 cut(s)	583
ApeKI	GCWGC	2 cut(s)	266, 404
ApoI	RAATTY	2 cut(s)	13, 103
AspS9I	GGNCC	1 cut(s)	72
AsuHPI	GGTGA	3 cut(s)	370, 649, 809
AvaII	GGWCC	1 cut(s)	72
AxyI	CCTNAGG	1 cut(s)	507
Bbv12I	GWGCWC	1 cut(s)	539
BbvI	GCAGC	2 cut(s)	278, 391
BccI	CCATC	4 cut(s)	19, 45, 500, 536
BciVI	GTATCC	1 cut(s)	738
BclI	TGATCA	1 cut(s)	808
BfmI	CTRYAG	2 cut(s)	405, 618
BfuI	GTATCC	1 cut(s)	738
BisI	GCNGC	2 cut(s)	267, 405
BlsI	GCNGC	2 cut(s)	268, 406
Bme18I	GGWCC	1 cut(s)	72
BmgT120I	GGNCC	1 cut(s)	72
BmiI	GGNNCC	1 cut(s)	244
BmrI	ACTGGG	1 cut(s)	815
BmuI	ACTGGG	1 cut(s)	815
BpmI	CTGGAG	1 cut(s)	600
BpuEI	CTTGAG	1 cut(s)	75
BsaBI	GATNNNNATC	1 cut(s)	813
BsaHI	GRCGYC	1 cut(s)	5
BsaWI	WCCGGW	1 cut(s)	108
BsaXI	ACNNNNNCTCC	4 cut(s)	103, 133, 191, 221
Bse1I	ACTGG	2 cut(s)	583, 821
Bse21I	CCTNAGG	1 cut(s)	507
Bse8I	GATNNNNATC	1 cut(s)	813
BseAI	TCCGGA	1 cut(s)	108
BseGI	GGATG	1 cut(s)	56
BseJI	GATNNNNATC	1 cut(s)	813
BseMII	CTCAG	1 cut(s)	521
BseNI	ACTGG	2 cut(s)	583, 821
BseXI	GCAGC	2 cut(s)	278, 391
BsgI	GTGCAG	2 cut(s)	294, 632
BshFI	GGCC	1 cut(s)	585
BsiHKAI	GWGCWC	1 cut(s)	539
BsiSI	CCGG	2 cut(s)	109, 830
BsmI	GAATGC	1 cut(s)	281
BsnI	GGCC	1 cut(s)	585
Bsp1286I	GDGCHC	1 cut(s)	539
Bsp13I	TCCGGA	1 cut(s)	108
Bsp143I	GATC	3 cut(s)	622, 678, 808
BspACI	CCGC	2 cut(s)	210, 732
BspANI	GGCC	1 cut(s)	585
BspCNI	CTCAG	1 cut(s)	520
BspEI	TCCGGA	1 cut(s)	108
BspHI	TCATGA	1 cut(s)	516
BspLI	GGNNCC	1 cut(s)	244
BspMAI	CTGCAG	1 cut(s)	409
BsrI	ACTGG	2 cut(s)	583, 821
BssMI	GATC	3 cut(s)	622, 678, 808
BssNI	GRCGYC	1 cut(s)	5
Bst4CI	ACNGT	1 cut(s)	726
Bst6I	CTCTTC	2 cut(s)	175, 292
BstACI	GRCGYC	1 cut(s)	5
BstDEI	CTNAG	2 cut(s)	398, 507
BstF5I	GGATG	1 cut(s)	56
BstKTI	GATC	3 cut(s)	625, 681, 811
BstMBI	GATC	3 cut(s)	622, 678, 808
BstMWI	GCNNNNNNNGC	2 cut(s)	605, 740
BstSFI	CTRYAG	2 cut(s)	405, 618
BstV1I	GCAGC	2 cut(s)	278, 391
Bsu36I	CCTNAGG	1 cut(s)	507
BsuI	GTATCC	1 cut(s)	738
BsuRI	GGCC	1 cut(s)	585
BtsCI	GGATG	1 cut(s)	56
BtsIMutI	CAGTG	2 cut(s)	311, 537
CciI	TCATGA	1 cut(s)	516
Cfr13I	GGNCC	1 cut(s)	72
Csp6I	GTAC	3 cut(s)	149, 768, 824
CspCI	CAANNNNNGTGG	2 cut(s)	258, 293
CviAII	CATG	5 cut(s)	9, 293, 517, 526, 706
CviQI	GTAC	3 cut(s)	149, 768, 824
DdeI	CTNAG	2 cut(s)	398, 507
DpnI	GATC	3 cut(s)	624, 680, 810
DpnII	GATC	3 cut(s)	622, 678, 808
Eam1104I	CTCTTC	2 cut(s)	175, 292
EarI	CTCTTC	2 cut(s)	175, 292
Eco147I	AGGCCT	1 cut(s)	585
Eco47I	GGWCC	1 cut(s)	72
Eco81I	CCTNAGG	1 cut(s)	507
EcoRI	GAATTC	1 cut(s)	13
FaeI	CATG	5 cut(s)	12, 296, 520, 529, 709
FalI	AAGNNNNNCTT	2 cut(s)	212, 244
FatI	CATG	5 cut(s)	8, 292, 516, 525, 705
FauI	CCCGC	1 cut(s)	739
FbaI	TGATCA	1 cut(s)	808
Fnu4HI	GCNGC	2 cut(s)	267, 405
FokI	GGATG	1 cut(s)	63
Fsp4HI	GCNGC	2 cut(s)	267, 405
GluI	GCNGC	2 cut(s)	267, 405
GsuI	CTGGAG	1 cut(s)	600
HaeIII	GGCC	1 cut(s)	585
HapII	CCGG	2 cut(s)	109, 830
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	5 cut(s)	12, 296, 520, 529, 709
HincII	GTYRAC	1 cut(s)	713
HindII	GTYRAC	1 cut(s)	713
HinfI	GANTC	3 cut(s)	154, 322, 378
HpaII	CCGG	2 cut(s)	109, 830
HphI	GGTGA	3 cut(s)	370, 649, 809
Hpy166II	GTNNAC	2 cut(s)	640, 713
Hpy188I	TCNGA	4 cut(s)	24, 159, 180, 354
Hpy188III	TCNNGA	4 cut(s)	100, 109, 517, 806
Hpy8I	GTNNAC	2 cut(s)	640, 713
HpyAV	CCTTC	2 cut(s)	349, 707
HpyCH4III	ACNGT	1 cut(s)	726
HpyCH4IV	ACGT	1 cut(s)	343
HpyCH4V	TGCA	5 cut(s)	311, 332, 407, 599, 613
HpyF10VI	GCNNNNNNNGC	2 cut(s)	605, 740
HpyF3I	CTNAG	2 cut(s)	398, 507
HpySE526I	ACGT	1 cut(s)	343
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	5 cut(s)	12, 296, 520, 529, 709
Kpn2I	TCCGGA	1 cut(s)	108
Ksp22I	TGATCA	1 cut(s)	808
Kzo9I	GATC	3 cut(s)	622, 678, 808
LmnI	GCTCC	2 cut(s)	212, 248
LpnPI	CCDG	9 cut(s)	32, 122, 273, 332, 494, 564, 771, 819, 834
Lsp1109I	GCAGC	2 cut(s)	278, 391
MaeII	ACGT	1 cut(s)	343
MaeIII	GTNAC	3 cut(s)	31, 358, 773
MalI	GATC	3 cut(s)	624, 680, 810
MboI	GATC	3 cut(s)	622, 678, 808
MboII	GAAGA	4 cut(s)	162, 279, 376, 682
MhlI	GDGCHC	1 cut(s)	539
MluCI	AATT	5 cut(s)	13, 103, 327, 471, 592
MnlI	CCTC	6 cut(s)	99, 105, 516, 575, 596, 826
MroI	TCCGGA	1 cut(s)	108
MseI	TTAA	1 cut(s)	470
MslI	CAYNNNNRTG	1 cut(s)	237
MspI	CCGG	2 cut(s)	109, 830
Mva1269I	GAATGC	1 cut(s)	281
MwoI	GCNNNNNNNGC	2 cut(s)	605, 740
NdeII	GATC	3 cut(s)	622, 678, 808
NlaIII	CATG	5 cut(s)	12, 296, 520, 529, 709
NlaIV	GGNNCC	1 cut(s)	244
NmuCI	GTSAC	3 cut(s)	31, 358, 773
PagI	TCATGA	1 cut(s)	516
PceI	AGGCCT	1 cut(s)	585
PctI	GAATGC	1 cut(s)	281
PfeI	GAWTC	3 cut(s)	154, 322, 378
PkrI	GCNGC	2 cut(s)	268, 406
PspN4I	GGNNCC	1 cut(s)	244
PspPI	GGNCC	1 cut(s)	72
PstI	CTGCAG	1 cut(s)	409
RsaI	GTAC	3 cut(s)	150, 769, 825
RsaNI	GTAC	3 cut(s)	149, 768, 824
RseI	CAYNNNNRTG	1 cut(s)	237
SaqAI	TTAA	1 cut(s)	470
SatI	GCNGC	2 cut(s)	267, 405
Sau3AI	GATC	3 cut(s)	622, 678, 808
Sau96I	GGNCC	1 cut(s)	72
SduI	GDGCHC	1 cut(s)	539
SetI	ASST	9 cut(s)	61, 83, 209, 262, 346, 360, 427, 699, 837
SfcI	CTRYAG	2 cut(s)	405, 618
SinI	GGWCC	1 cut(s)	72
SmiMI	CAYNNNNRTG	1 cut(s)	237
SmlI	CTYRAG	1 cut(s)	90
SmoI	CTYRAG	1 cut(s)	90
Sse9I	AATT	5 cut(s)	13, 103, 327, 471, 592
SseBI	AGGCCT	1 cut(s)	585
SsiI	CCGC	2 cut(s)	210, 732
SspI	AATATT	1 cut(s)	687
StuI	AGGCCT	1 cut(s)	585
TaaI	ACNGT	1 cut(s)	726
TaiI	ACGT	1 cut(s)	346
TaqI	TCGA	2 cut(s)	138, 693
TasI	AATT	5 cut(s)	13, 103, 327, 471, 592
TatI	WGTACW	1 cut(s)	823
TfiI	GAWTC	3 cut(s)	154, 322, 378
Tru1I	TTAA	1 cut(s)	470
Tru9I	TTAA	1 cut(s)	470
TscAI	CASTG	2 cut(s)	318, 544
TseFI	GTSAC	3 cut(s)	31, 358, 773
TseI	GCWGC	2 cut(s)	266, 404
Tsp45I	GTSAC	3 cut(s)	31, 358, 773
TspDTI	ATGAA	6 cut(s)	162, 354, 409, 514, 533, 694
TspGWI	ACGGA	1 cut(s)	448
TspRI	CASTG	2 cut(s)	318, 544
VpaK11BI	GGWCC	1 cut(s)	72
XapI	RAATTY	2 cut(s)	13, 103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.