Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0001326

Physical Location & Seq

Genomic Coordinates Reverse (-)

1493302 .. 1496339

Gene Structure 3038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1019200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGCGTCGTGGAATTCGATTCCTCTGGAAATCATATACGAAGTGATGGGATGGGCGGCGTTCGTGAGTTGGTCCGTCAGCTTCTATCCGCAAGTCGTTTTGAATTTCCGCCGGAAAAGTGTGGTGGGTCTGAACTTCGATTTCGTGGTGCTGAATTTGACCAAGCACTCCTCTTACCTCATTTACAACGCCACTCTCTACTTCAGCTCCGCCGTTCAGAAGCAGTACTTCGAAAAGTACGGCGAGAAACAGATGATACCTGTTGCAGCAAATGATGTTGCTTTCTCTATTCATGCTGTTTTACTGACGGCAATTACCCTGTACCAAATATTAATCTATGAACGCGGAAATCAGAAGGTCTCCAAGATTTCCATTGGAATTGTTGCTGCTGTGTGGTTAGGTGCTGCAGTTTGTGTTTTCTTAGCTTTGCCAAGCCATTCCTGGCTTTGGTTGATCTCCATTTTCAACTCAATTCAAGTTTTTATGACATGCATAAAATATATTCCCCAGGCGGTCATGAACTTTTTGCGGAAGAGTACAGATGGATTCAGCATTGGCAACATTTTACTTGACTTTTCTGGAGGGGTGGCTAATTATGCACAAATGGCCATGCAGTCTATAGATCAAGATTCTTGGGTGAACTTTTATGGAAATATAGGAAAGACTTTGCTGTCTTTGATATCTATATTCTTTGACCTTCTATTCATGGGTCAACATTTCGTGCTGTATCGTGGAAAGAAAGCTCTGATCTCCCCTAAAATCATCAATAAGGAGAGCACAGAACCGCTTGTCAAGTCTTCCGATGACTCAGTTTCAGAAAACGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

PQ-loop

Protein Analysis

276

Amino Acids

30.96

Weight (kDa)

8.71

Isoelectric Point (pI)

30.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PQ-loop	PF04193	13 - 69	5.5e-18	PQ loop repeat
PQ-loop	PF04193	152 - 208	8e-16	PQ loop repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40670
fragaria_vesca	FvH4_6g52300 FvH4_6g52311 FvH4_6g52320 FvH4_6g52320 FvH4_6g52320 FvH4_6g52360
malus_domestica	MD09G1018800.v1.1 MD09G1018900.v1.1 MD17G1019200.v1.1 MD17G1019400.v1.1
prunus_persica	Prupe.3G298300_v2.0.a1 Prupe.3G298400_v2.0.a1
pyrus_communis	pycom111g01560 pycom111g01570 pycom17g01600 pycom17g01610
rosa_chinensis	RchiOBHm_Chr2g0173831 RchiOBHm_Chr2g0173881 RchiOBHm_Chr2g0173901 RchiOBHm_Chr2g0174021 RchiOBHm_Chr2g0174261
rosa_laevigata	RLG00000022232 RLG00000022233 RLG00000022236
rosa_multiflora	Rmu_co8240537.1_g000001 Rmu_sc0003188.1_g000020 Rmu_sc0003188.1_g000025 Rmu_sc0040252.1_g000001
rosa_roxburghii	Rroxscaffold_160G00433840 Rroxscaffold_2G00078530 Rroxscaffold_2G00078550 Rroxscaffold_2G00078560
rosa_rugosa	Rorug02G0573300 Rorug02G0573400 Rorug02G0573900
rosa_samantha	Rh2AG652500 Rh2AG652600 Rh2AG656300 Rh2BG663300 Rh2BG663700 Rh2BG664500 Rh2BG667500 Rh2CG627700 Rh2CG628300 Rh2CG628400 Rh2CG628900 Rh2DG678200 Rh2DG678600 Rh2DG678700
rosa_wichuraiana	Rw2G053560 Rw2G053600 Rw2G053610 Rw2G053650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	670
AccII	CGCG	1 cut(s)	345
AciI	CCGC	8 cut(s)	56, 89, 109, 210, 345, 512, 529, 785
AclI	AACGTT	1 cut(s)	822
AcoI	YGGCCR	1 cut(s)	606
AcsI	RAATTY	3 cut(s)	13, 103, 154
AcuI	CTGAAG	1 cut(s)	187
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	4 cut(s)	227, 239, 323, 538
AfiI	CCNNNNNNNGG	1 cut(s)	447
AgsI	TTSAA	3 cut(s)	103, 466, 476
AjnI	CCWGG	2 cut(s)	440, 507
AluBI	AGCT	4 cut(s)	81, 207, 425, 743
AluI	AGCT	4 cut(s)	81, 207, 425, 743
Alw21I	GWGCWC	1 cut(s)	779
Alw26I	GTCTC	1 cut(s)	364
AoxI	GGCC	1 cut(s)	606
ApeKI	GCWGC	3 cut(s)	266, 386, 404
ApoI	RAATTY	3 cut(s)	13, 103, 154
AseI	ATTAAT	1 cut(s)	332
AspS9I	GGNCC	1 cut(s)	72
AsuHPI	GGTGA	1 cut(s)	649
AsuII	TTCGAA	1 cut(s)	231
AvaII	GGWCC	1 cut(s)	72
BalI	TGGCCA	1 cut(s)	608
BbsI	GAAGAC	1 cut(s)	789
Bbv12I	GWGCWC	1 cut(s)	779
BbvI	GCAGC	3 cut(s)	278, 373, 391
BccI	CCATC	3 cut(s)	40, 45, 536
BceAI	ACGGC	3 cut(s)	197, 256, 324
BciT130I	CCWGG	2 cut(s)	442, 509
BcoDI	GTCTC	1 cut(s)	364
BfmI	CTRYAG	2 cut(s)	405, 618
BisI	GCNGC	4 cut(s)	57, 267, 387, 405
BlsI	GCNGC	4 cut(s)	58, 268, 388, 406
BmcAI	AGTACT	1 cut(s)	227
Bme1390I	CCNGG	2 cut(s)	442, 509
Bme18I	GGWCC	1 cut(s)	72
BmgT120I	GGNCC	1 cut(s)	72
BmrFI	CCNGG	2 cut(s)	442, 509
BpiI	GAAGAC	1 cut(s)	789
BpmI	CTGGAG	1 cut(s)	600
Bpu14I	TTCGAA	1 cut(s)	231
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	364
BsaJI	CCNNGG	1 cut(s)	507
BsaXI	ACNNNNNCTCC	2 cut(s)	191, 221
Bsc4I	CCNNNNNNNGG	1 cut(s)	447
BseBI	CCWGG	2 cut(s)	442, 509
BseDI	CCNNGG	1 cut(s)	507
BseGI	GGATG	1 cut(s)	56
BseLI	CCNNNNNNNGG	1 cut(s)	447
BseMII	CTCAG	1 cut(s)	822
BseRI	GAGGAG	1 cut(s)	160
BseXI	GCAGC	3 cut(s)	278, 373, 391
Bsh1236I	CGCG	1 cut(s)	345
BshFI	GGCC	1 cut(s)	608
BsiHKAI	GWGCWC	1 cut(s)	779
BsiSI	CCGG	1 cut(s)	112
BslI	CCNNNNNNNGG	1 cut(s)	447
BsmAI	GTCTC	1 cut(s)	364
BsnI	GGCC	1 cut(s)	608
Bso31I	GGTCTC	1 cut(s)	364
Bsp119I	TTCGAA	1 cut(s)	231
Bsp1286I	GDGCHC	1 cut(s)	779
Bsp143I	GATC	3 cut(s)	453, 622, 747
BspACI	CCGC	8 cut(s)	56, 89, 109, 210, 345, 512, 529, 785
BspANI	GGCC	1 cut(s)	608
BspCNI	CTCAG	1 cut(s)	821
BspFNI	CGCG	1 cut(s)	345
BspHI	TCATGA	1 cut(s)	516
BspMAI	CTGCAG	1 cut(s)	409
BspT104I	TTCGAA	1 cut(s)	231
BspTNI	GGTCTC	1 cut(s)	364
BssECI	CCNNGG	1 cut(s)	507
BssMI	GATC	3 cut(s)	453, 622, 747
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	2 cut(s)	442, 509
Bst6I	CTCTTC	1 cut(s)	527
BstACI	GRCGYC	1 cut(s)	5
BstBI	TTCGAA	1 cut(s)	231
BstDEI	CTNAG	2 cut(s)	421, 808
BstF5I	GGATG	1 cut(s)	56
BstFNI	CGCG	1 cut(s)	345
BstKTI	GATC	3 cut(s)	456, 625, 750
BstMAI	GTCTC	1 cut(s)	364
BstMBI	GATC	3 cut(s)	453, 622, 747
BstMWI	GCNNNNNNNGC	2 cut(s)	596, 605
BstNI	CCWGG	2 cut(s)	442, 509
BstNSI	RCATGY	1 cut(s)	492
BstSCI	CCNGG	2 cut(s)	440, 507
BstSFI	CTRYAG	2 cut(s)	405, 618
BstUI	CGCG	1 cut(s)	345
BstV1I	GCAGC	3 cut(s)	278, 373, 391
BstV2I	GAAGAC	1 cut(s)	789
BsuRI	GGCC	1 cut(s)	608
BtsCI	GGATG	1 cut(s)	56
CciI	TCATGA	1 cut(s)	516
Cfr13I	GGNCC	1 cut(s)	72
Csp6I	GTAC	4 cut(s)	226, 238, 322, 537
CviAII	CATG	5 cut(s)	293, 489, 517, 610, 706
CviJI	RGCY	8 cut(s)	81, 207, 425, 435, 445, 590, 608, 743
CviKI_1	RGCY	8 cut(s)	81, 207, 425, 435, 445, 590, 608, 743
CviQI	GTAC	4 cut(s)	226, 238, 322, 537
DdeI	CTNAG	2 cut(s)	421, 808
DpnI	GATC	3 cut(s)	455, 624, 749
DpnII	GATC	3 cut(s)	453, 622, 747
DrdI	GACNNNNNNGTC	1 cut(s)	670
DseDI	GACNNNNNNGTC	1 cut(s)	670
EaeI	YGGCCR	1 cut(s)	606
Eam1104I	CTCTTC	1 cut(s)	527
EarI	CTCTTC	1 cut(s)	527
EciI	GGCGGA	2 cut(s)	98, 199
Eco31I	GGTCTC	1 cut(s)	364
Eco32I	GATATC	1 cut(s)	681
Eco47I	GGWCC	1 cut(s)	72
Eco57I	CTGAAG	1 cut(s)	187
EcoRI	GAATTC	1 cut(s)	13
EcoRII	CCWGG	2 cut(s)	440, 507
EcoRV	GATATC	1 cut(s)	681
EcoT22I	ATGCAT	1 cut(s)	494
FaeI	CATG	5 cut(s)	296, 492, 520, 613, 709
FalI	AAGNNNNNCTT	2 cut(s)	212, 244
FatI	CATG	5 cut(s)	292, 488, 516, 609, 705
Fnu4HI	GCNGC	4 cut(s)	57, 267, 387, 405
FokI	GGATG	1 cut(s)	63
Fsp4HI	GCNGC	4 cut(s)	57, 267, 387, 405
GluI	GCNGC	4 cut(s)	57, 267, 387, 405
GsuI	CTGGAG	1 cut(s)	600
HaeIII	GGCC	1 cut(s)	608
HapII	CCGG	1 cut(s)	112
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	5 cut(s)	296, 492, 520, 613, 709
HincII	GTYRAC	1 cut(s)	713
HindII	GTYRAC	1 cut(s)	713
HinfI	GANTC	4 cut(s)	19, 546, 629, 806
HpaII	CCGG	1 cut(s)	112
HphI	GGTGA	1 cut(s)	649
Hpy166II	GTNNAC	2 cut(s)	640, 713
Hpy188I	TCNGA	6 cut(s)	132, 219, 354, 747, 802, 817
Hpy188III	TCNNGA	5 cut(s)	26, 64, 517, 579, 626
Hpy8I	GTNNAC	2 cut(s)	640, 713
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	2 cut(s)	349, 707
HpyCH4IV	ACGT	1 cut(s)	822
HpyCH4V	TGCA	5 cut(s)	266, 407, 492, 599, 613
HpyF10VI	GCNNNNNNNGC	2 cut(s)	596, 605
HpyF3I	CTNAG	2 cut(s)	421, 808
HpySE526I	ACGT	1 cut(s)	822
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	5 cut(s)	296, 492, 520, 613, 709
Kzo9I	GATC	3 cut(s)	453, 622, 747
LmnI	GCTCC	1 cut(s)	212
LpnPI	CCDG	9 cut(s)	11, 125, 273, 332, 427, 454, 494, 521, 564
Lsp1109I	GCAGC	3 cut(s)	278, 373, 391
MaeII	ACGT	1 cut(s)	822
MalI	GATC	3 cut(s)	455, 624, 749
MboI	GATC	3 cut(s)	453, 622, 747
MboII	GAAGA	2 cut(s)	544, 789
MhlI	GDGCHC	1 cut(s)	779
MlsI	TGGCCA	1 cut(s)	608
MluCI	AATT	7 cut(s)	13, 103, 154, 312, 378, 471, 592
MluNI	TGGCCA	1 cut(s)	608
MlyI	GAGTC	1 cut(s)	800
MnlI	CCTC	4 cut(s)	33, 181, 188, 575
Mox20I	TGGCCA	1 cut(s)	608
Mph1103I	ATGCAT	1 cut(s)	494
MscI	TGGCCA	1 cut(s)	608
MseI	TTAA	1 cut(s)	332
Msp20I	TGGCCA	1 cut(s)	608
MspI	CCGG	1 cut(s)	112
MspR9I	CCNGG	2 cut(s)	442, 509
MvaI	CCWGG	2 cut(s)	442, 509
MvnI	CGCG	1 cut(s)	345
MwoI	GCNNNNNNNGC	2 cut(s)	596, 605
NdeII	GATC	3 cut(s)	453, 622, 747
NlaIII	CATG	5 cut(s)	296, 492, 520, 613, 709
NsiI	ATGCAT	1 cut(s)	494
NspI	RCATGY	1 cut(s)	492
NspV	TTCGAA	1 cut(s)	231
PagI	TCATGA	1 cut(s)	516
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PfeI	GAWTC	3 cut(s)	19, 546, 629
PkrI	GCNGC	4 cut(s)	58, 268, 388, 406
PleI	GAGTC	1 cut(s)	800
PpsI	GAGTC	1 cut(s)	800
PshBI	ATTAAT	1 cut(s)	332
Psp1406I	AACGTT	1 cut(s)	822
Psp6I	CCWGG	2 cut(s)	440, 507
PspGI	CCWGG	2 cut(s)	440, 507
PspPI	GGNCC	1 cut(s)	72
PstI	CTGCAG	1 cut(s)	409
RsaI	GTAC	4 cut(s)	227, 239, 323, 538
RsaNI	GTAC	4 cut(s)	226, 238, 322, 537
SaqAI	TTAA	1 cut(s)	332
SatI	GCNGC	4 cut(s)	57, 267, 387, 405
Sau3AI	GATC	3 cut(s)	453, 622, 747
Sau96I	GGNCC	1 cut(s)	72
ScaI	AGTACT	1 cut(s)	227
SchI	GAGTC	1 cut(s)	800
ScrFI	CCNGG	2 cut(s)	442, 509
SduI	GDGCHC	1 cut(s)	779
SfcI	CTRYAG	2 cut(s)	405, 618
SfuI	TTCGAA	1 cut(s)	231
SinI	GGWCC	1 cut(s)	72
Sse9I	AATT	7 cut(s)	13, 103, 154, 312, 378, 471, 592
SsiI	CCGC	8 cut(s)	56, 89, 109, 210, 345, 512, 529, 785
SspI	AATATT	1 cut(s)	330
StyD4I	CCNGG	2 cut(s)	440, 507
TaiI	ACGT	1 cut(s)	825
TaqI	TCGA	3 cut(s)	17, 138, 231
TasI	AATT	7 cut(s)	13, 103, 154, 312, 378, 471, 592
TatI	WGTACW	2 cut(s)	225, 536
TauI	GCSGC	1 cut(s)	59
TfiI	GAWTC	3 cut(s)	19, 546, 629
Tru1I	TTAA	1 cut(s)	332
Tru9I	TTAA	1 cut(s)	332
TseI	GCWGC	3 cut(s)	266, 386, 404
TspDTI	ATGAA	4 cut(s)	281, 354, 533, 694
TspGWI	ACGGA	1 cut(s)	64
VpaK11BI	GGWCC	1 cut(s)	72
VspI	ATTAAT	1 cut(s)	332
XapI	RAATTY	3 cut(s)	13, 103, 154
XceI	RCATGY	1 cut(s)	492
XcmI	CCANNNNNNNNNTGG	1 cut(s)	438
ZrmI	AGTACT	1 cut(s)	227
Zsp2I	ATGCAT	1 cut(s)	494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.