Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0001326

Physical Location & Seq

Genomic Coordinates Reverse (-)

1155304 .. 1159967

Gene Structure 4664 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1018800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGCGGATCTTGACTACTTCAAGGAGAGCTTGGAGCCACTGGAGTTCTCCAGTCCAAGAGAGGTAAAGTGGGGGAGGAAAGGAATGGCGTCGTGGAATTCGATTCCGTTGGAAATCACATACGAAGTTCTGGGATGGGTGGCGTTCCTGAGTTGGACCGTCGGTGCCTACCCGCAAATCGTCTTAAATTTCCGCCGGAAAAGTGTTGTGGGGCTGAACTTCGATTTCGTGGTGCTGAATTTGACGAAGCAATCCGCCTATCTCATTTACAACGCCAGTCTCTACTTCAGCTCGGCCGTCCAAAAGCAGTACTTTGAAAAGTACGGCAAAGAACAGATGATACCTGTTGCAGCAAATGATGTTGCTTTCTCTATTCATGCCGTTTTGATGACGGCAGTTACCCTTTGCCAAATTGCAATCTATGAACGCGGAAATCAGAAGGTCTCCAAGATTTCCTTTGGAATTGTTGCTGCCGTGTGGTTAGGTGCTGCAGTTTGTGTTTTCTTAGCTCTGCCAACCCATTCCTGGCTTTGGTTGATCTCAATTTTCAACTCAATTCAAGTTTTTATGACAGTCATCAAATATATTCCCCAGGCATCCATGAACTTCCTGCGGAAGAGCACAGATGGATTCAGCATTGGCAACATTTTACTTGACTTTTCCGGAGGGGTGGCTAATTATGCACAAATGGCCGTGCAGTCTATAGATCAAGGTTCTTGGGTGAACTTCTATGGAAATATGGGAAAGACGCTGCTGTCTTTGATATCTATATTCTTTGACCTTATATTCATGAATCAACACTTTGTGCTGTATCGCGGCAAGAGAGCATCGATCGCCCCTAAAATCATCAGTAAGGAGAGCACGGAACCACTTATCAAGTCTTCCGATGACCCAGTTTCAGAAAATGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

PQ-loop

Protein Analysis

304

Amino Acids

34.06

Weight (kDa)

8.68

Isoelectric Point (pI)

25.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PQ-loop	PF04193	42 - 97	6.8e-16	PQ loop repeat
PQ-loop	PF04193	180 - 236	2.7e-14	PQ loop repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40670
fragaria_vesca	FvH4_6g52300 FvH4_6g52311 FvH4_6g52320 FvH4_6g52320 FvH4_6g52320 FvH4_6g52360
malus_domestica	MD09G1018800.v1.1 MD09G1018900.v1.1 MD17G1019200.v1.1 MD17G1019400.v1.1
prunus_persica	Prupe.3G298300_v2.0.a1 Prupe.3G298400_v2.0.a1
pyrus_communis	pycom111g01560 pycom111g01570 pycom17g01600 pycom17g01610
rosa_chinensis	RchiOBHm_Chr2g0173831 RchiOBHm_Chr2g0173881 RchiOBHm_Chr2g0173901 RchiOBHm_Chr2g0174021 RchiOBHm_Chr2g0174261
rosa_laevigata	RLG00000022232 RLG00000022233 RLG00000022236
rosa_multiflora	Rmu_co8240537.1_g000001 Rmu_sc0003188.1_g000020 Rmu_sc0003188.1_g000025 Rmu_sc0040252.1_g000001
rosa_roxburghii	Rroxscaffold_160G00433840 Rroxscaffold_2G00078530 Rroxscaffold_2G00078550 Rroxscaffold_2G00078560
rosa_rugosa	Rorug02G0573300 Rorug02G0573400 Rorug02G0573900
rosa_samantha	Rh2AG652500 Rh2AG652600 Rh2AG656300 Rh2BG663300 Rh2BG663700 Rh2BG664500 Rh2BG667500 Rh2CG627700 Rh2CG628300 Rh2CG628400 Rh2CG628900 Rh2DG678200 Rh2DG678600 Rh2DG678700
rosa_wichuraiana	Rw2G053560 Rw2G053600 Rw2G053610 Rw2G053650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	754
AccB1I	GGYRCC	1 cut(s)	164
AccII	CGCG	2 cut(s)	429, 816
AccIII	TCCGGA	1 cut(s)	662
AciI	CCGC	7 cut(s)	5, 173, 193, 255, 429, 613, 816
AclWI	GGATC	1 cut(s)	15
AcoI	YGGCCR	2 cut(s)	294, 690
AcsI	RAATTY	3 cut(s)	97, 187, 238
AcuI	CTGAAG	1 cut(s)	271
AcyI	GRCGYC	1 cut(s)	89
AdeI	CACNNNGTG	1 cut(s)	805
AfaI	GTAC	2 cut(s)	311, 323
AfiI	CCNNNNNNNGG	2 cut(s)	525, 531
AgsI	TTSAA	4 cut(s)	22, 317, 550, 560
AjnI	CCWGG	2 cut(s)	524, 591
AluBI	AGCT	3 cut(s)	30, 291, 509
AluI	AGCT	3 cut(s)	30, 291, 509
Alw21I	GWGCWC	2 cut(s)	623, 863
Alw26I	GTCTC	2 cut(s)	284, 448
AlwI	GGATC	1 cut(s)	15
Aor13HI	TCCGGA	1 cut(s)	662
AoxI	GGCC	2 cut(s)	294, 690
ApeKI	GCWGC	4 cut(s)	350, 470, 488, 751
ApoI	RAATTY	3 cut(s)	97, 187, 238
AspS9I	GGNCC	1 cut(s)	156
AsuHPI	GGTGA	1 cut(s)	733
AvaII	GGWCC	1 cut(s)	156
BanI	GGYRCC	1 cut(s)	164
BbsI	GAAGAC	1 cut(s)	873
Bbv12I	GWGCWC	2 cut(s)	623, 863
BbvI	GCAGC	4 cut(s)	362, 457, 475, 738
BccI	CCATC	2 cut(s)	129, 620
BceAI	ACGGC	6 cut(s)	281, 340, 365, 408, 458, 677
BciT130I	CCWGG	2 cut(s)	526, 593
BcoDI	GTCTC	2 cut(s)	284, 448
BfmI	CTRYAG	2 cut(s)	489, 702
BisI	GCNGC	5 cut(s)	351, 471, 489, 752, 817
BlsI	GCNGC	5 cut(s)	352, 472, 490, 753, 818
BmcAI	AGTACT	1 cut(s)	311
Bme1390I	CCNGG	2 cut(s)	526, 593
Bme18I	GGWCC	1 cut(s)	156
BmgT120I	GGNCC	1 cut(s)	156
BmiI	GGNNCC	3 cut(s)	36, 166, 867
BmrFI	CCNGG	2 cut(s)	526, 593
BmrI	ACTGGG	1 cut(s)	887
BmsI	GCATC	2 cut(s)	605, 836
BmuI	ACTGGG	1 cut(s)	887
BpiI	GAAGAC	1 cut(s)	873
BpmI	CTGGAG	2 cut(s)	34, 62
Bsa29I	ATCGAT	1 cut(s)	830
BsaHI	GRCGYC	1 cut(s)	89
BsaI	GGTCTC	1 cut(s)	448
BsaJI	CCNNGG	1 cut(s)	591
BsaWI	WCCGGW	1 cut(s)	662
Bsc4I	CCNNNNNNNGG	2 cut(s)	525, 531
Bse1I	ACTGG	4 cut(s)	45, 51, 276, 893
BseAI	TCCGGA	1 cut(s)	662
BseBI	CCWGG	2 cut(s)	526, 593
BseCI	ATCGAT	1 cut(s)	830
BseDI	CCNNGG	1 cut(s)	591
BseGI	GGATG	2 cut(s)	140, 596
BseLI	CCNNNNNNNGG	2 cut(s)	525, 531
BseMII	CTCAG	1 cut(s)	140
BseNI	ACTGG	4 cut(s)	45, 51, 276, 893
BseX3I	CGGCCG	1 cut(s)	294
BseXI	GCAGC	4 cut(s)	362, 457, 475, 738
BsgI	GTGCAG	1 cut(s)	716
Bsh1236I	CGCG	2 cut(s)	429, 816
Bsh1285I	CGRYCG	2 cut(s)	297, 834
BshFI	GGCC	2 cut(s)	296, 692
BshNI	GGYRCC	1 cut(s)	164
BshVI	ATCGAT	1 cut(s)	830
BsiEI	CGRYCG	2 cut(s)	297, 834
BsiHKAI	GWGCWC	2 cut(s)	623, 863
BsiSI	CCGG	2 cut(s)	196, 663
BslI	CCNNNNNNNGG	2 cut(s)	525, 531
BsmAI	GTCTC	2 cut(s)	284, 448
BsnI	GGCC	2 cut(s)	296, 692
Bso31I	GGTCTC	1 cut(s)	448
Bsp1286I	GDGCHC	2 cut(s)	623, 863
Bsp13I	TCCGGA	1 cut(s)	662
Bsp143I	GATC	4 cut(s)	7, 537, 706, 831
BspACI	CCGC	7 cut(s)	5, 173, 193, 255, 429, 613, 816
BspANI	GGCC	2 cut(s)	296, 692
BspCNI	CTCAG	1 cut(s)	141
BspDI	ATCGAT	1 cut(s)	830
BspEI	TCCGGA	1 cut(s)	662
BspFNI	CGCG	2 cut(s)	429, 816
BspHI	TCATGA	1 cut(s)	789
BspLI	GGNNCC	3 cut(s)	36, 166, 867
BspMAI	CTGCAG	1 cut(s)	493
BspPI	GGATC	1 cut(s)	15
BspQI	GCTCTTC	1 cut(s)	611
BspT107I	GGYRCC	1 cut(s)	164
BspTNI	GGTCTC	1 cut(s)	448
BsrI	ACTGG	4 cut(s)	45, 51, 276, 893
BssECI	CCNNGG	1 cut(s)	591
BssMI	GATC	4 cut(s)	7, 537, 706, 831
BssNI	GRCGYC	1 cut(s)	89
Bst2UI	CCWGG	2 cut(s)	526, 593
Bst4CI	ACNGT	2 cut(s)	160, 574
Bst6I	CTCTTC	1 cut(s)	611
BstACI	GRCGYC	1 cut(s)	89
BstDEI	CTNAG	2 cut(s)	149, 505
BstF5I	GGATG	2 cut(s)	140, 596
BstFNI	CGCG	2 cut(s)	429, 816
BstKTI	GATC	4 cut(s)	10, 540, 709, 834
BstMAI	GTCTC	2 cut(s)	284, 448
BstMBI	GATC	4 cut(s)	7, 537, 706, 831
BstMCI	CGRYCG	2 cut(s)	297, 834
BstMWI	GCNNNNNNNGC	3 cut(s)	680, 689, 833
BstNI	CCWGG	2 cut(s)	526, 593
BstSCI	CCNGG	2 cut(s)	524, 591
BstSFI	CTRYAG	2 cut(s)	489, 702
BstUI	CGCG	2 cut(s)	429, 816
BstV1I	GCAGC	4 cut(s)	362, 457, 475, 738
BstV2I	GAAGAC	1 cut(s)	873
BstX2I	RGATCY	1 cut(s)	7
BstYI	RGATCY	1 cut(s)	7
BstZI	CGGCCG	1 cut(s)	294
Bsu15I	ATCGAT	1 cut(s)	830
BsuRI	GGCC	2 cut(s)	296, 692
BsuTUI	ATCGAT	1 cut(s)	830
BtsCI	GGATG	2 cut(s)	140, 596
BtsIMutI	CAGTG	1 cut(s)	38
CciI	TCATGA	1 cut(s)	789
Cfr13I	GGNCC	1 cut(s)	156
ClaI	ATCGAT	1 cut(s)	830
CseI	GACGC	2 cut(s)	78, 757
Csp6I	GTAC	2 cut(s)	310, 322
CviAII	CATG	3 cut(s)	377, 601, 790
CviJI	RGCY	9 cut(s)	30, 37, 214, 291, 296, 509, 529, 674, 692
CviKI_1	RGCY	9 cut(s)	30, 37, 214, 291, 296, 509, 529, 674, 692
CviQI	GTAC	2 cut(s)	310, 322
DdeI	CTNAG	2 cut(s)	149, 505
DpnI	GATC	4 cut(s)	9, 539, 708, 833
DpnII	GATC	4 cut(s)	7, 537, 706, 831
DraIII	CACNNNGTG	1 cut(s)	805
DrdI	GACNNNNNNGTC	1 cut(s)	754
DseDI	GACNNNNNNGTC	1 cut(s)	754
EaeI	YGGCCR	2 cut(s)	294, 690
EagI	CGGCCG	1 cut(s)	294
Eam1104I	CTCTTC	1 cut(s)	611
EarI	CTCTTC	1 cut(s)	611
EciI	GGCGGA	3 cut(s)	20, 182, 244
EclXI	CGGCCG	1 cut(s)	294
Eco31I	GGTCTC	1 cut(s)	448
Eco32I	GATATC	1 cut(s)	765
Eco47I	GGWCC	1 cut(s)	156
Eco52I	CGGCCG	1 cut(s)	294
Eco57I	CTGAAG	1 cut(s)	271
EcoRI	GAATTC	1 cut(s)	97
EcoRII	CCWGG	2 cut(s)	524, 591
EcoRV	GATATC	1 cut(s)	765
FaeI	CATG	3 cut(s)	380, 604, 793
FalI	AAGNNNNNCTT	6 cut(s)	14, 46, 296, 328, 440, 472
FatI	CATG	3 cut(s)	376, 600, 789
FauI	CCCGC	1 cut(s)	180
Fnu4HI	GCNGC	5 cut(s)	351, 471, 489, 752, 817
FokI	GGATG	2 cut(s)	147, 583
Fsp4HI	GCNGC	5 cut(s)	351, 471, 489, 752, 817
GluI	GCNGC	5 cut(s)	351, 471, 489, 752, 817
GsuI	CTGGAG	2 cut(s)	34, 62
HaeIII	GGCC	2 cut(s)	296, 692
HapII	CCGG	2 cut(s)	196, 663
HgaI	GACGC	2 cut(s)	78, 757
Hin1I	GRCGYC	1 cut(s)	89
Hin1II	CATG	3 cut(s)	380, 604, 793
HinfI	GANTC	3 cut(s)	103, 630, 793
HpaII	CCGG	2 cut(s)	196, 663
HphI	GGTGA	1 cut(s)	733
Hpy166II	GTNNAC	1 cut(s)	724
Hpy188I	TCNGA	3 cut(s)	438, 886, 901
Hpy188III	TCNNGA	4 cut(s)	11, 148, 663, 790
Hpy8I	GTNNAC	1 cut(s)	724
Hpy99I	CGWCG	2 cut(s)	94, 164
HpyAV	CCTTC	1 cut(s)	433
HpyCH4III	ACNGT	2 cut(s)	160, 574
HpyCH4V	TGCA	5 cut(s)	350, 416, 491, 683, 697
HpyF10VI	GCNNNNNNNGC	3 cut(s)	680, 689, 833
HpyF3I	CTNAG	2 cut(s)	149, 505
Hsp92I	GRCGYC	1 cut(s)	89
Hsp92II	CATG	3 cut(s)	380, 604, 793
Kpn2I	TCCGGA	1 cut(s)	662
Kzo9I	GATC	4 cut(s)	7, 537, 706, 831
LguI	GCTCTTC	1 cut(s)	611
LmnI	GCTCC	1 cut(s)	34
Lsp1109I	GCAGC	4 cut(s)	362, 457, 475, 738
LweI	GCATC	2 cut(s)	605, 836
MaeIII	GTNAC	1 cut(s)	397
MalI	GATC	4 cut(s)	9, 539, 708, 833
MboI	GATC	4 cut(s)	7, 537, 706, 831
MboII	GAAGA	2 cut(s)	628, 873
MflI	RGATCY	1 cut(s)	7
MhlI	GDGCHC	2 cut(s)	623, 863
MluCI	AATT	8 cut(s)	97, 187, 238, 411, 462, 543, 555, 676
MmeI	TCCRAC	2 cut(s)	90, 134
MnlI	CCTC	3 cut(s)	55, 69, 659
MroI	TCCGGA	1 cut(s)	662
MseI	TTAA	1 cut(s)	185
MspI	CCGG	2 cut(s)	196, 663
MspR9I	CCNGG	2 cut(s)	526, 593
MvaI	CCWGG	2 cut(s)	526, 593
MvnI	CGCG	2 cut(s)	429, 816
MwoI	GCNNNNNNNGC	3 cut(s)	680, 689, 833
NdeII	GATC	4 cut(s)	7, 537, 706, 831
NlaIII	CATG	3 cut(s)	380, 604, 793
NlaIV	GGNNCC	3 cut(s)	36, 166, 867
NmeAIII	GCCGAG	1 cut(s)	272
PagI	TCATGA	1 cut(s)	789
PciSI	GCTCTTC	1 cut(s)	611
PcsI	WCGNNNNNNNCGW	1 cut(s)	98
PfeI	GAWTC	3 cut(s)	103, 630, 793
PkrI	GCNGC	5 cut(s)	352, 472, 490, 753, 818
Ple19I	CGATCG	1 cut(s)	834
Psp6I	CCWGG	2 cut(s)	524, 591
PspGI	CCWGG	2 cut(s)	524, 591
PspN4I	GGNNCC	3 cut(s)	36, 166, 867
PspPI	GGNCC	1 cut(s)	156
PsrI	GAACNNNNNNTAC	2 cut(s)	324, 356
PstI	CTGCAG	1 cut(s)	493
PsuI	RGATCY	1 cut(s)	7
PvuI	CGATCG	1 cut(s)	834
RsaI	GTAC	2 cut(s)	311, 323
RsaNI	GTAC	2 cut(s)	310, 322
SapI	GCTCTTC	1 cut(s)	611
SaqAI	TTAA	1 cut(s)	185
SatI	GCNGC	5 cut(s)	351, 471, 489, 752, 817
Sau3AI	GATC	4 cut(s)	7, 537, 706, 831
Sau96I	GGNCC	1 cut(s)	156
ScaI	AGTACT	1 cut(s)	311
ScrFI	CCNGG	2 cut(s)	526, 593
SduI	GDGCHC	2 cut(s)	623, 863
SetI	ASST	9 cut(s)	32, 66, 293, 346, 444, 487, 511, 715, 783
SfaNI	GCATC	2 cut(s)	605, 836
SfcI	CTRYAG	2 cut(s)	489, 702
SinI	GGWCC	1 cut(s)	156
Sse9I	AATT	8 cut(s)	97, 187, 238, 411, 462, 543, 555, 676
SsiI	CCGC	7 cut(s)	5, 173, 193, 255, 429, 613, 816
StyD4I	CCNGG	2 cut(s)	524, 591
TaaI	ACNGT	2 cut(s)	160, 574
TaqI	TCGA	3 cut(s)	101, 222, 830
TasI	AATT	8 cut(s)	97, 187, 238, 411, 462, 543, 555, 676
TatI	WGTACW	1 cut(s)	309
TauI	GCSGC	1 cut(s)	819
TfiI	GAWTC	3 cut(s)	103, 630, 793
Tru1I	TTAA	1 cut(s)	185
Tru9I	TTAA	1 cut(s)	185
TscAI	CASTG	1 cut(s)	45
TseI	GCWGC	4 cut(s)	350, 470, 488, 751
TspDTI	ATGAA	5 cut(s)	365, 438, 617, 778, 806
TspGWI	ACGGA	2 cut(s)	96, 878
TspRI	CASTG	1 cut(s)	45
VpaK11BI	GGWCC	1 cut(s)	156
XapI	RAATTY	3 cut(s)	97, 187, 238
XcmI	CCANNNNNNNNNTGG	1 cut(s)	522
ZrmI	AGTACT	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.