Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001326

Physical Location & Seq

Genomic Coordinates Forward (+)

81845444 .. 81848179

Gene Structure 2736 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022232

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGCGTCGTGGAATTCGATTCAGCTGGAGATCACATACAGAGTTCTGGGGTGGTTGACTTTCACGTTTTGGGCTGTCGGCTTCTACCCTCAAGTGTTTTTGAATTTCCGTCGAAAAAGTGTTGTGGGGCTGAGCATCGATTTTGTGGTGCTGAATTGGACGAAACACTCGTCGTATCTCATTTACAACGCCTCTCTCTACTTCAGCTCCGCCGTTCAGAAGCAGTACTTTGAAAAGTACGGTTTCGGAGAGATGATACCTGTAGCTGCAAATGATGTTGCTTTCTCTGTTCATGCCGTTTTTGTAACATCAATTATCCTTTTCCAAATTGCAATCTATGAACGAGGAAGTCAGAAAGTATCCAAGATTGCCATTGGAATCGTCTTTGGTGTGTGGCTATTTGGTGCAGTTTGTATCTTGGTTGCTCTGCCAACTCATTCTTGGCTTTGGCTCATCTCTATCTTCAACTCAATTCAAGTTTTTATGACAGTCATCAAATATACTCCCCAGGCATACATGAACTTCATAAGAAAGAGCACAGATGGATTAAGTATTTTCTTTATTCTACTTGATCTTTCGGGAGGAGTGGGAAGTTATGTACAAATGGCCGTGCAGTCTATTGATCAAGATTCTTGGGTGAACTTTTATGGAAACATAGGGAAGACACTGCTATCTTTGATATGTGTATCATTTGATCTTCTTTTCATTTGCCAACATTATGTTCTGTATCCTTCCAAGAAGGCATTGGTATCTCCTAAAATGATCACCAGCAAGGAGGACTGGGAGCCCCTTGTCGGTTCTGATAATCACCAAGTGTCTGAAGATGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

PQ-loop

Protein Analysis

277

Amino Acids

31.35

Weight (kDa)

7.69

Isoelectric Point (pI)

32.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PQ-loop	PF04193	14 - 69	8.4e-16	PQ loop repeat
PQ-loop	PF04193	152 - 208	8.4e-15	PQ loop repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40670
fragaria_vesca	FvH4_6g52300 FvH4_6g52311 FvH4_6g52320 FvH4_6g52320 FvH4_6g52320 FvH4_6g52360
malus_domestica	MD09G1018800.v1.1 MD09G1018900.v1.1 MD17G1019200.v1.1 MD17G1019400.v1.1
prunus_persica	Prupe.3G298300_v2.0.a1 Prupe.3G298400_v2.0.a1
pyrus_communis	pycom111g01560 pycom111g01570 pycom17g01600 pycom17g01610
rosa_chinensis	RchiOBHm_Chr2g0173831 RchiOBHm_Chr2g0173881 RchiOBHm_Chr2g0173901 RchiOBHm_Chr2g0174021 RchiOBHm_Chr2g0174261
rosa_laevigata	RLG00000022232 RLG00000022233 RLG00000022236
rosa_multiflora	Rmu_co8240537.1_g000001 Rmu_sc0003188.1_g000020 Rmu_sc0003188.1_g000025 Rmu_sc0040252.1_g000001
rosa_roxburghii	Rroxscaffold_160G00433840 Rroxscaffold_2G00078530 Rroxscaffold_2G00078550 Rroxscaffold_2G00078560
rosa_rugosa	Rorug02G0573300 Rorug02G0573400 Rorug02G0573900
rosa_samantha	Rh2AG652500 Rh2AG652600 Rh2AG656300 Rh2BG663300 Rh2BG663700 Rh2BG664500 Rh2BG667500 Rh2CG627700 Rh2CG628300 Rh2CG628400 Rh2CG628900 Rh2DG678200 Rh2DG678600 Rh2DG678700
rosa_wichuraiana	Rw2G053560 Rw2G053600 Rw2G053610 Rw2G053650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	210
AcoI	YGGCCR	1 cut(s)	606
AcsI	RAATTY	2 cut(s)	13, 103
AcuI	CTGAAG	1 cut(s)	187
AcyI	GRCGYC	1 cut(s)	5
AdeI	CACNNNGTG	1 cut(s)	814
AfaI	GTAC	3 cut(s)	227, 239, 600
AfiI	CCNNNNNNNGG	1 cut(s)	794
AgsI	TTSAA	4 cut(s)	103, 233, 466, 476
AjnI	CCWGG	1 cut(s)	507
AjuI	GAANNNNNNNTTGG	2 cut(s)	705, 737
AluBI	AGCT	3 cut(s)	25, 207, 266
AluI	AGCT	3 cut(s)	25, 207, 266
Alw21I	GWGCWC	1 cut(s)	539
AoxI	GGCC	1 cut(s)	606
ApeKI	GCWGC	1 cut(s)	266
ApoI	RAATTY	2 cut(s)	13, 103
ArsI	GACNNNNNNTTYG	2 cut(s)	155, 187
AsuHPI	GGTGA	3 cut(s)	649, 757, 800
BanII	GRGCYC	1 cut(s)	789
BbsI	GAAGAC	1 cut(s)	668
Bbv12I	GWGCWC	1 cut(s)	539
BbvI	GCAGC	1 cut(s)	253
BccI	CCATC	1 cut(s)	536
BceAI	ACGGC	3 cut(s)	197, 281, 593
BciT130I	CCWGG	1 cut(s)	509
BciVI	GTATCC	2 cut(s)	370, 738
BclI	TGATCA	2 cut(s)	622, 762
BfaI	CTAG	1 cut(s)	829
BfmI	CTRYAG	1 cut(s)	261
BfuI	GTATCC	2 cut(s)	370, 738
BisI	GCNGC	1 cut(s)	267
BlpI	GCTNAGC	1 cut(s)	131
BlsI	GCNGC	1 cut(s)	268
BmcAI	AGTACT	1 cut(s)	227
Bme1390I	CCNGG	1 cut(s)	509
BmiI	GGNNCC	1 cut(s)	786
BmrFI	CCNGG	1 cut(s)	509
BmrI	ACTGGG	1 cut(s)	790
BmsI	GCATC	1 cut(s)	144
BmuI	ACTGGG	1 cut(s)	790
BpiI	GAAGAC	1 cut(s)	668
BpmI	CTGGAG	1 cut(s)	47
Bpu1102I	GCTNAGC	1 cut(s)	131
BpuEI	CTTGAG	1 cut(s)	75
Bsa29I	ATCGAT	1 cut(s)	138
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	507
BsaXI	ACNNNNNCTCC	2 cut(s)	191, 221
Bsc4I	CCNNNNNNNGG	1 cut(s)	794
Bse1I	ACTGG	1 cut(s)	785
BseBI	CCWGG	1 cut(s)	509
BseCI	ATCGAT	1 cut(s)	138
BseDI	CCNNGG	1 cut(s)	507
BseLI	CCNNNNNNNGG	1 cut(s)	794
BseMII	CTCAG	1 cut(s)	122
BseNI	ACTGG	1 cut(s)	785
BseRI	GAGGAG	1 cut(s)	597
BseXI	GCAGC	1 cut(s)	253
BsgI	GTGCAG	2 cut(s)	426, 632
BshFI	GGCC	1 cut(s)	608
BshVI	ATCGAT	1 cut(s)	138
BsiHKAI	GWGCWC	1 cut(s)	539
BslI	CCNNNNNNNGG	1 cut(s)	794
BsnI	GGCC	1 cut(s)	608
Bsp1286I	GDGCHC	2 cut(s)	539, 789
Bsp1407I	TGTACA	1 cut(s)	598
Bsp143I	GATC	5 cut(s)	30, 571, 622, 694, 762
Bsp1720I	GCTNAGC	1 cut(s)	131
BspACI	CCGC	1 cut(s)	210
BspANI	GGCC	1 cut(s)	608
BspCNI	CTCAG	1 cut(s)	123
BspDI	ATCGAT	1 cut(s)	138
BspLI	GGNNCC	1 cut(s)	786
BsrGI	TGTACA	1 cut(s)	598
BsrI	ACTGG	1 cut(s)	785
BssECI	CCNNGG	1 cut(s)	507
BssMI	GATC	5 cut(s)	30, 571, 622, 694, 762
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	509
Bst4CI	ACNGT	2 cut(s)	242, 490
BstACI	GRCGYC	1 cut(s)	5
BstAUI	TGTACA	1 cut(s)	598
BstDEI	CTNAG	1 cut(s)	131
BstKTI	GATC	5 cut(s)	33, 574, 625, 697, 765
BstMBI	GATC	5 cut(s)	30, 571, 622, 694, 762
BstNI	CCWGG	1 cut(s)	509
BstSCI	CCNGG	1 cut(s)	507
BstSFI	CTRYAG	1 cut(s)	261
BstV1I	GCAGC	1 cut(s)	253
BstV2I	GAAGAC	1 cut(s)	668
Bsu15I	ATCGAT	1 cut(s)	138
BsuI	GTATCC	2 cut(s)	370, 738
BsuRI	GGCC	1 cut(s)	608
BsuTUI	ATCGAT	1 cut(s)	138
BtsI	GCAGTG	1 cut(s)	665
BtsIMutI	CAGTG	1 cut(s)	665
ClaI	ATCGAT	1 cut(s)	138
Csp6I	GTAC	3 cut(s)	226, 238, 599
CviAII	CATG	2 cut(s)	293, 517
CviQI	GTAC	3 cut(s)	226, 238, 599
DdeI	CTNAG	1 cut(s)	131
DpnI	GATC	5 cut(s)	32, 573, 624, 696, 764
DpnII	GATC	5 cut(s)	30, 571, 622, 694, 762
DraIII	CACNNNGTG	1 cut(s)	814
EaeI	YGGCCR	1 cut(s)	606
EciI	GGCGGA	1 cut(s)	199
Eco24I	GRGCYC	1 cut(s)	789
Eco57I	CTGAAG	1 cut(s)	187
EcoRI	GAATTC	1 cut(s)	13
EcoRII	CCWGG	1 cut(s)	507
EcoT38I	GRGCYC	1 cut(s)	789
FaeI	CATG	2 cut(s)	296, 520
FalI	AAGNNNNNCTT	2 cut(s)	212, 244
FatI	CATG	2 cut(s)	292, 516
FbaI	TGATCA	2 cut(s)	622, 762
Fnu4HI	GCNGC	1 cut(s)	267
FriOI	GRGCYC	1 cut(s)	789
Fsp4HI	GCNGC	1 cut(s)	267
FspBI	CTAG	1 cut(s)	829
GluI	GCNGC	1 cut(s)	267
GsuI	CTGGAG	1 cut(s)	47
HaeIII	GGCC	1 cut(s)	608
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	296, 520
HincII	GTYRAC	1 cut(s)	57
HindII	GTYRAC	1 cut(s)	57
HinfI	GANTC	3 cut(s)	19, 378, 629
HphI	GGTGA	3 cut(s)	649, 757, 800
Hpy166II	GTNNAC	2 cut(s)	57, 640
Hpy188I	TCNGA	5 cut(s)	219, 248, 354, 802, 820
Hpy188III	TCNNGA	2 cut(s)	579, 626
Hpy8I	GTNNAC	2 cut(s)	57, 640
Hpy99I	CGWCG	3 cut(s)	10, 114, 175
HpyAV	CCTTC	2 cut(s)	733, 741
HpyCH4III	ACNGT	2 cut(s)	242, 490
HpyCH4IV	ACGT	1 cut(s)	65
HpyCH4V	TGCA	4 cut(s)	269, 332, 407, 613
HpyF3I	CTNAG	1 cut(s)	131
HpySE526I	ACGT	1 cut(s)	65
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	296, 520
Ksp22I	TGATCA	2 cut(s)	622, 762
Kzo9I	GATC	5 cut(s)	30, 571, 622, 694, 762
LmnI	GCTCC	2 cut(s)	212, 784
LpnPI	CCDG	7 cut(s)	11, 32, 273, 494, 521, 766, 781
Lsp1109I	GCAGC	1 cut(s)	253
LweI	GCATC	1 cut(s)	144
MaeI	CTAG	1 cut(s)	829
MaeII	ACGT	1 cut(s)	65
MaeIII	GTNAC	1 cut(s)	304
MalI	GATC	5 cut(s)	32, 573, 624, 696, 764
MboI	GATC	5 cut(s)	30, 571, 622, 694, 762
MboII	GAAGA	3 cut(s)	454, 673, 689
MhlI	GDGCHC	2 cut(s)	539, 789
MluCI	AATT	6 cut(s)	13, 103, 154, 312, 327, 471
MnlI	CCTC	5 cut(s)	99, 202, 338, 575, 769
MseI	TTAA	1 cut(s)	548
MspA1I	CMGCKG	1 cut(s)	25
MspR9I	CCNGG	1 cut(s)	509
MvaI	CCWGG	1 cut(s)	509
NdeII	GATC	5 cut(s)	30, 571, 622, 694, 762
NlaIII	CATG	2 cut(s)	296, 520
NlaIV	GGNNCC	1 cut(s)	786
PcsI	WCGNNNNNNNCGW	2 cut(s)	14, 167
PfeI	GAWTC	3 cut(s)	19, 378, 629
PkrI	GCNGC	1 cut(s)	268
Psp6I	CCWGG	1 cut(s)	507
PspGI	CCWGG	1 cut(s)	507
PspN4I	GGNNCC	1 cut(s)	786
PvuII	CAGCTG	1 cut(s)	25
RsaI	GTAC	3 cut(s)	227, 239, 600
RsaNI	GTAC	3 cut(s)	226, 238, 599
SaqAI	TTAA	1 cut(s)	548
SatI	GCNGC	1 cut(s)	267
Sau3AI	GATC	5 cut(s)	30, 571, 622, 694, 762
ScaI	AGTACT	1 cut(s)	227
ScrFI	CCNGG	1 cut(s)	509
SduI	GDGCHC	2 cut(s)	539, 789
SetI	ASST	5 cut(s)	27, 68, 209, 262, 268
SfaNI	GCATC	1 cut(s)	144
SfcI	CTRYAG	1 cut(s)	261
SmlI	CTYRAG	1 cut(s)	90
SmoI	CTYRAG	1 cut(s)	90
Sse9I	AATT	6 cut(s)	13, 103, 154, 312, 327, 471
SsiI	CCGC	1 cut(s)	210
SspMI	CTAG	1 cut(s)	829
StyD4I	CCNGG	1 cut(s)	507
TaaI	ACNGT	2 cut(s)	242, 490
TaiI	ACGT	1 cut(s)	68
TaqI	TCGA	3 cut(s)	17, 112, 138
TasI	AATT	6 cut(s)	13, 103, 154, 312, 327, 471
TatI	WGTACW	2 cut(s)	225, 598
TfiI	GAWTC	3 cut(s)	19, 378, 629
Tru1I	TTAA	1 cut(s)	548
Tru9I	TTAA	1 cut(s)	548
TscAI	CASTG	1 cut(s)	672
TseI	GCWGC	1 cut(s)	266
TspDTI	ATGAA	5 cut(s)	281, 354, 514, 533, 694
TspGWI	ACGGA	1 cut(s)	98
TspRI	CASTG	1 cut(s)	672
XapI	RAATTY	2 cut(s)	13, 103
XcmI	CCANNNNNNNNNTGG	2 cut(s)	438, 742
XspI	CTAG	1 cut(s)	829
ZrmI	AGTACT	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.