Rh2AG652500

Cystinosin homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0001326
Physical Location & Seq
Forward (+)
87044954 .. 87066703
21750 bp
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UTR
Exon/CDS
Intron
Rh2AG652500.1

Sequence Viewer

Length: 831 bp
ATGGCGTCGTGGAATTCGATTCAGCTGGAGATCACATACAGAGTTCTGGGGTGGTTGACTTTCACGTTTTGGGCTGTCGGCTTCTACCCTCAAGTGTTCTTGAATTTCCGTCGAAAAAGTGTTGTGGGCCTGAGCATCGATTTTGTGGTGCTGAATTGGACGAAACACTCGTCGTATCTCATTTACAACGCCTCTCTTTACTTCAGCTCCGCCGTTCAGAAGCAGTACTTTGAAAAGTACGGTTTCGGAGAGATGATACCTGTAGCTGCAAATGATGTTGCTTTCTCTGTTCATGCCGTTTTTGTAACATCCATTATCCTTTTCCAAATTGCAACCTATGAACGAGGAAGTCAGAAAGTATCCAAGATTGCCATTGGAATCGTCTTTGGTGTGTGGCTATTTGCTGCAGTTTGCACCTTGGTTGCTCTGCCAACTCATTCTTGGCTTTGGCTCATCTCTATCTTCAACTCAATTCAAGTTTTTATGACAGTCATCAAATATACTCCCCAGGCATACATGAACTTCATAAGAAAGAGCACAGATGGATTAAGTATTTTCTTTATTCTACTTGATCTTTCGGGAGGAGTGGGAAGTTATGCACAAATGGCTGTGCAGTCTATTGATCAAGATTCTTGGGTGAACTTTTATGGAAACATAGGGAAGACACTGCTATCTTTGATATGTGTATCATTTGATCTTCTTTTCATTTGCCAACATTATGTTCTGTATACTTCCAAGAAGGCATTGATATCTCCTAAAATGACCACCAGCAAGGAGGACTTGGAGCCCCTTATCAGTTCTGATAATCACCAAGTGTCTGAAAATGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 map04142
Pfam Domains
Protein Families
PQ-loop

Protein Analysis

276

Amino Acids

31.29

Weight (kDa)

8.32

Isoelectric Point (pI)

32.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PQ-loop PF04193 14 - 69 8.4e-16 PQ loop repeat
PQ-loop PF04193 152 - 208 6.8e-15 PQ loop repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 728
AciI CCGC 1 cut(s) 210
AcsI RAATTY 2 cut(s) 13, 103
AcuI CTGAAG 1 cut(s) 187
AcyI GRCGYC 1 cut(s) 5
AdeI CACNNNGTG 1 cut(s) 814
AfaI GTAC 2 cut(s) 227, 239
AgsI TTSAA 4 cut(s) 103, 233, 466, 476
AjnI CCWGG 1 cut(s) 507
AjuI GAANNNNNNNTTGG 2 cut(s) 705, 737
AluBI AGCT 3 cut(s) 25, 207, 266
AluI AGCT 3 cut(s) 25, 207, 266
Alw21I GWGCWC 1 cut(s) 539
AoxI GGCC 1 cut(s) 127
ApeKI GCWGC 2 cut(s) 266, 404
ApoI RAATTY 2 cut(s) 13, 103
ArsI GACNNNNNNTTYG 2 cut(s) 155, 187
AspS9I GGNCC 1 cut(s) 127
AsuHPI GGTGA 2 cut(s) 649, 800
BanII GRGCYC 1 cut(s) 789
BbsI GAAGAC 1 cut(s) 668
Bbv12I GWGCWC 1 cut(s) 539
BbvI GCAGC 2 cut(s) 253, 391
BccI CCATC 1 cut(s) 536
BceAI ACGGC 2 cut(s) 197, 281
BciT130I CCWGG 1 cut(s) 509
BciVI GTATCC 1 cut(s) 370
BclI TGATCA 1 cut(s) 622
BfaI CTAG 1 cut(s) 829
BfmI CTRYAG 2 cut(s) 261, 405
BfuI GTATCC 1 cut(s) 370
BisI GCNGC 2 cut(s) 267, 405
BlsI GCNGC 2 cut(s) 268, 406
BmcAI AGTACT 1 cut(s) 227
Bme1390I CCNGG 1 cut(s) 509
BmgT120I GGNCC 1 cut(s) 127
BmiI GGNNCC 1 cut(s) 786
BmrFI CCNGG 1 cut(s) 509
BmsI GCATC 1 cut(s) 144
BpiI GAAGAC 1 cut(s) 668
BpmI CTGGAG 1 cut(s) 47
Bpu10I CCTNAGC 1 cut(s) 131
BpuEI CTTGAG 1 cut(s) 75
Bsa29I ATCGAT 1 cut(s) 138
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 2 cut(s) 417, 507
BsaXI ACNNNNNCTCC 2 cut(s) 191, 221
BseBI CCWGG 1 cut(s) 509
BseCI ATCGAT 1 cut(s) 138
BseDI CCNNGG 2 cut(s) 417, 507
BseGI GGATG 1 cut(s) 308
BseMII CTCAG 1 cut(s) 122
BseRI GAGGAG 1 cut(s) 597
BseXI GCAGC 2 cut(s) 253, 391
BsgI GTGCAG 1 cut(s) 632
BshFI GGCC 1 cut(s) 129
BshVI ATCGAT 1 cut(s) 138
BsiHKAI GWGCWC 1 cut(s) 539
BsnI GGCC 1 cut(s) 129
Bsp1286I GDGCHC 2 cut(s) 539, 789
Bsp143I GATC 4 cut(s) 30, 571, 622, 694
BspACI CCGC 1 cut(s) 210
BspANI GGCC 1 cut(s) 129
BspCNI CTCAG 1 cut(s) 123
BspDI ATCGAT 1 cut(s) 138
BspLI GGNNCC 1 cut(s) 786
BspMAI CTGCAG 1 cut(s) 409
BssECI CCNNGG 2 cut(s) 417, 507
BssMI GATC 4 cut(s) 30, 571, 622, 694
BssNAI GTATAC 1 cut(s) 729
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 417
Bst1107I GTATAC 1 cut(s) 729
Bst2UI CCWGG 1 cut(s) 509
Bst4CI ACNGT 2 cut(s) 242, 490
BstACI GRCGYC 1 cut(s) 5
BstDEI CTNAG 1 cut(s) 131
BstF5I GGATG 1 cut(s) 308
BstKTI GATC 4 cut(s) 33, 574, 625, 697
BstMBI GATC 4 cut(s) 30, 571, 622, 694
BstMWI GCNNNNNNNGC 1 cut(s) 605
BstNI CCWGG 1 cut(s) 509
BstSCI CCNGG 1 cut(s) 507
BstSFI CTRYAG 2 cut(s) 261, 405
BstV1I GCAGC 2 cut(s) 253, 391
BstV2I GAAGAC 1 cut(s) 668
BstZ17I GTATAC 1 cut(s) 729
Bsu15I ATCGAT 1 cut(s) 138
BsuI GTATCC 1 cut(s) 370
BsuRI GGCC 1 cut(s) 129
BsuTUI ATCGAT 1 cut(s) 138
BtsCI GGATG 1 cut(s) 308
BtsI GCAGTG 1 cut(s) 665
BtsIMutI CAGTG 1 cut(s) 665
Cfr13I GGNCC 1 cut(s) 127
ClaI ATCGAT 1 cut(s) 138
Csp6I GTAC 2 cut(s) 226, 238
CviAII CATG 2 cut(s) 293, 517
CviQI GTAC 2 cut(s) 226, 238
DdeI CTNAG 1 cut(s) 131
DpnI GATC 4 cut(s) 32, 573, 624, 696
DpnII GATC 4 cut(s) 30, 571, 622, 694
DraIII CACNNNGTG 1 cut(s) 814
EciI GGCGGA 1 cut(s) 199
Eco130I CCWWGG 1 cut(s) 417
Eco24I GRGCYC 1 cut(s) 789
Eco32I GATATC 1 cut(s) 750
Eco57I CTGAAG 1 cut(s) 187
EcoRI GAATTC 1 cut(s) 13
EcoRII CCWGG 1 cut(s) 507
EcoRV GATATC 1 cut(s) 750
EcoT14I CCWWGG 1 cut(s) 417
EcoT38I GRGCYC 1 cut(s) 789
ErhI CCWWGG 1 cut(s) 417
FaeI CATG 2 cut(s) 296, 520
FalI AAGNNNNNCTT 4 cut(s) 212, 244, 764, 796
FatI CATG 2 cut(s) 292, 516
FbaI TGATCA 1 cut(s) 622
FblI GTMKAC 1 cut(s) 728
Fnu4HI GCNGC 2 cut(s) 267, 405
FokI GGATG 1 cut(s) 295
FriOI GRGCYC 1 cut(s) 789
Fsp4HI GCNGC 2 cut(s) 267, 405
FspBI CTAG 1 cut(s) 829
GluI GCNGC 2 cut(s) 267, 405
GsuI CTGGAG 1 cut(s) 47
HaeIII GGCC 1 cut(s) 129
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 296, 520
HincII GTYRAC 1 cut(s) 57
HindII GTYRAC 1 cut(s) 57
HinfI GANTC 3 cut(s) 19, 378, 629
HphI GGTGA 2 cut(s) 649, 800
Hpy166II GTNNAC 3 cut(s) 57, 640, 729
Hpy188I TCNGA 5 cut(s) 219, 248, 354, 802, 820
Hpy188III TCNNGA 3 cut(s) 100, 579, 626
Hpy8I GTNNAC 3 cut(s) 57, 640, 729
Hpy99I CGWCG 3 cut(s) 10, 114, 175
HpyAV CCTTC 1 cut(s) 733
HpyCH4III ACNGT 2 cut(s) 242, 490
HpyCH4IV ACGT 1 cut(s) 65
HpyCH4V TGCA 6 cut(s) 269, 332, 407, 414, 599, 613
HpyF10VI GCNNNNNNNGC 1 cut(s) 605
HpyF3I CTNAG 1 cut(s) 131
HpySE526I ACGT 1 cut(s) 65
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 296, 520
Ksp22I TGATCA 1 cut(s) 622
Kzo9I GATC 4 cut(s) 30, 571, 622, 694
LmnI GCTCC 2 cut(s) 212, 784
LpnPI CCDG 7 cut(s) 11, 32, 143, 273, 494, 521, 781
Lsp1109I GCAGC 2 cut(s) 253, 391
LweI GCATC 1 cut(s) 144
MaeI CTAG 1 cut(s) 829
MaeII ACGT 1 cut(s) 65
MaeIII GTNAC 1 cut(s) 304
MalI GATC 4 cut(s) 32, 573, 624, 696
MboI GATC 4 cut(s) 30, 571, 622, 694
MboII GAAGA 3 cut(s) 454, 673, 689
MhlI GDGCHC 2 cut(s) 539, 789
MluCI AATT 5 cut(s) 13, 103, 154, 327, 471
MnlI CCTC 5 cut(s) 99, 202, 338, 575, 769
MseI TTAA 1 cut(s) 548
MspA1I CMGCKG 1 cut(s) 25
MspR9I CCNGG 1 cut(s) 509
MvaI CCWGG 1 cut(s) 509
MwoI GCNNNNNNNGC 1 cut(s) 605
NdeII GATC 4 cut(s) 30, 571, 622, 694
NlaIII CATG 2 cut(s) 296, 520
NlaIV GGNNCC 1 cut(s) 786
PcsI WCGNNNNNNNCGW 2 cut(s) 14, 167
PfeI GAWTC 3 cut(s) 19, 378, 629
PkrI GCNGC 2 cut(s) 268, 406
Psp6I CCWGG 1 cut(s) 507
PspGI CCWGG 1 cut(s) 507
PspN4I GGNNCC 1 cut(s) 786
PspPI GGNCC 1 cut(s) 127
PstI CTGCAG 1 cut(s) 409
PvuII CAGCTG 1 cut(s) 25
RsaI GTAC 2 cut(s) 227, 239
RsaNI GTAC 2 cut(s) 226, 238
SaqAI TTAA 1 cut(s) 548
SatI GCNGC 2 cut(s) 267, 405
Sau3AI GATC 4 cut(s) 30, 571, 622, 694
Sau96I GGNCC 1 cut(s) 127
ScaI AGTACT 1 cut(s) 227
ScrFI CCNGG 1 cut(s) 509
SduI GDGCHC 2 cut(s) 539, 789
SetI ASST 7 cut(s) 27, 68, 209, 262, 268, 338, 419
SfaNI GCATC 1 cut(s) 144
SfcI CTRYAG 2 cut(s) 261, 405
SmlI CTYRAG 1 cut(s) 90
SmoI CTYRAG 1 cut(s) 90
Sse9I AATT 5 cut(s) 13, 103, 154, 327, 471
SsiI CCGC 1 cut(s) 210
SspMI CTAG 1 cut(s) 829
StyD4I CCNGG 1 cut(s) 507
StyI CCWWGG 1 cut(s) 417
TaaI ACNGT 2 cut(s) 242, 490
TaiI ACGT 1 cut(s) 68
TaqI TCGA 3 cut(s) 17, 112, 138
TasI AATT 5 cut(s) 13, 103, 154, 327, 471
TatI WGTACW 1 cut(s) 225
TfiI GAWTC 3 cut(s) 19, 378, 629
Tru1I TTAA 1 cut(s) 548
Tru9I TTAA 1 cut(s) 548
TscAI CASTG 1 cut(s) 672
TseI GCWGC 2 cut(s) 266, 404
TspDTI ATGAA 5 cut(s) 281, 354, 514, 533, 694
TspGWI ACGGA 1 cut(s) 98
TspRI CASTG 1 cut(s) 672
XapI RAATTY 2 cut(s) 13, 103
XcmI CCANNNNNNNNNTGG 1 cut(s) 438
XmiI GTMKAC 1 cut(s) 728
XspI CTAG 1 cut(s) 829
ZrmI AGTACT 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.