AT5G43820

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
17618948 .. 17620710
1763 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G43820.1

Sequence Viewer

Length: 1641 bp
ATGCTTAGGAGATGGAACATAGTTATTGAATCGCTACGTCGCGTTCATAGCAGTGATTTAGAAAACCTAATTTCGGCTTCCCTATACAATCGAACACTTTGCACAGCCTCAGAATCATTGAATCATGGTGTTGTTGATGAGAGTTATGTTCTAGCTGAATTATCTTCATTGCTTCCAATTTCATCTAATAAAACCTCAGTGTCAAAGGAAGACAGTAGCTCAAAGAATCAAGTAGCTATTGATTCGTTTTTGTCAGCAGAGGACAAACTTAGAGGTGTGTTTCTTCAGAAATTGAAAGGCAAGTCTGCTATTCAGAAGAGTTTGAGTAGTCTTGGTATTGGTTTGAGTATTGACATTGTTGCCGATGTATTGAATCGAGGGAATTTAAGCGGCGAAGCGATGGTAACGTTCTTTGATTGGGCGGTTCGTGAGCCTGGTGTGACTAAAGATGTTGGTAGCTACAGTGTGATTTTAAGAGCGTTAGGAAGGAGAAAGCTTTTCTCTTTTATGATGGATGTTCTAAAGGGAATGGTATGTGAAGGTGTTAATCCTGATCTGGAGTGTTTAACTATTGCTATGGATAGCTTTGTTAGGGTTCATTATGTGCGTAGAGCGATAGAGTTGTTTGAGGAAAGTGAAAGTTTTGGGGTGAAATGTAGTACTGAGTCTTTCAATGCATTGTTACGGTGTCTATGTGAGCGTTCACATGTGAGTGCTGCAAAGTCAGTATTTAATGCTAAGAAAGGTAATATACCTTTTGATAGTTGTAGTTATAACATTATGATTAGTGGGTGGTCAAAGCTCGGTGAGGTTGAAGAGATGGAAAAGGTTTTGAAGGAGATGGTGGAGAGTGGATTTGGTCCTGACTGTTTGTCTTATAGCCATCTTATTGAAGGGTTGGGAAGAACTGGTCGTATCAATGATTCTGTTGAGATCTTTGATAATATAAAACACAAGGGTAATGTTCCTGATGCAAATGTTTACAATGCTATGATCTGTAATTTCATATCTGCTCGAGATTTTGATGAGTCTATGAGGTACTACCGAAGGATGCTGGATGAGGAATGTGAACCTAACTTGGAAACCTATTCCAAGCTTGTTTCTGGGCTCATTAAAGGCCGTAAGGTTTCTGATGCGCTTGAGATATTCGAAGAGATGTTATCAAGAGGGGTTCTTCCCACCACAGGGCTTGTTACCTCTTTCCTCAAGCCTCTTTGCAGCTATGGTCCACCACACGCTGCAATGGTTATCTATCAGAAATCAAGAAAAGCCGGGTGTAGGATATCAGAAAGCGCATATAAGCTGTTGCTTAAGCGGCTATCAAGATTTGGAAAATGCGGGATGCTGTTGAACGTATGGGATGAAATGCAAGAGTCTGGATATCCTTCTGACGTGGAAGTCTACGAGTATATTGTGGATGGGCTCTGTATCATTGGGCATCTAGAGAATGCTGTGCTTGTGATGGAAGAAGCTATGCGTAAAGGGTTTTGCCCAAACCGCTTTGTTTATAGTAGGCTTAGCAGTAAATTAATGGCTTCAAACAAGACAGAATTGGCATATAAGCTGTTTCTGAAGATCAAAAAGGCTCGTGCTACAGAAAATGCTCGCAGCTTCTGGCGATCAAATGGATGGCACTTTTGA

Protein Analysis

546

Amino Acids

61.3

Weight (kDa)

8.06

Isoelectric Point (pI)

43.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 254 - 301 1.1e-10 PPR repeat family
PPR PF01535 257 - 286 6.1e-08 PPR repeat
PPR_3 PF13812 276 - 332 3.9e-06 Pentatricopeptide repeat domain
PPR_long PF17177 306 - 435 8e-07 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 323 - 372 6.4e-08 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 774
AasI GACNNNNNNGTC 1 cut(s) 1397
AccI GTMKAC 1 cut(s) 1401
AccII CGCG 1 cut(s) 42
AciI CCGC 5 cut(s) 390, 422, 1315, 1338, 1498
AclI AACGTT 1 cut(s) 407
AcsI RAATTY 1 cut(s) 382
AcuI CTGAAG 2 cut(s) 269, 1592
AfaI GTAC 2 cut(s) 661, 1040
AfiI CCNNNNNNNGG 4 cut(s) 73, 1184, 1185, 1278
AflII CTTAAG 1 cut(s) 1310
AflIII ACRYGT 1 cut(s) 706
AhdI GACNNNNNGTC 1 cut(s) 871
AjiI CACGTC 1 cut(s) 1393
AjnI CCWGG 1 cut(s) 433
AlwNI CAGNNNCTG 1 cut(s) 1614
Ama87I CYCGRG 1 cut(s) 1014
AoxI GGCC 1 cut(s) 1117
ApeKI GCWGC 4 cut(s) 716, 1218, 1238, 1608
ApoI RAATTY 1 cut(s) 382
AseI ATTAAT 1 cut(s) 1529
AspLEI GCGC 2 cut(s) 1138, 1295
AspS9I GGNCC 2 cut(s) 860, 1226
AsuC2I CCSGG 1 cut(s) 1273
AsuHPI GGTGA 2 cut(s) 661, 818
AsuII TTCGAA 1 cut(s) 1149
AvaI CYCGRG 1 cut(s) 1014
AvaII GGWCC 2 cut(s) 860, 1226
BanII GRGCYC 2 cut(s) 1110, 1425
BauI CACGAG 1 cut(s) 1587
BbsI GAAGAC 1 cut(s) 216
BbvI GCAGC 4 cut(s) 703, 1225, 1230, 1620
BccI CCATC 9 cut(s) 6, 394, 505, 814, 835, 891, 1412, 1456, 1623
BceAI ACGGC 1 cut(s) 1104
BcgI CGANNNNNNTGC 2 cut(s) 81, 115
BciT130I CCWGG 1 cut(s) 435
BcnI CCSGG 1 cut(s) 1273
BfaI CTAG 2 cut(s) 152, 1442
BfmI CTRYAG 2 cut(s) 460, 1593
BfrI CTTAAG 1 cut(s) 1310
BglII AGATCT 1 cut(s) 933
BisI GCNGC 6 cut(s) 391, 717, 1219, 1239, 1316, 1609
BlpI GCTNAGC 1 cut(s) 1517
BlsI GCNGC 6 cut(s) 392, 718, 1220, 1240, 1317, 1610
BmcAI AGTACT 1 cut(s) 661
Bme1390I CCNGG 2 cut(s) 435, 1273
Bme18I GGWCC 2 cut(s) 860, 1226
BmeRI GACNNNNNGTC 1 cut(s) 871
BmeT110I CYCGRG 1 cut(s) 1014
BmgBI CACGTC 1 cut(s) 1393
BmgT120I GGNCC 2 cut(s) 860, 1226
BmrFI CCNGG 2 cut(s) 435, 1273
BmsI GCATC 5 cut(s) 961, 1041, 1123, 1332, 1447
BpiI GAAGAC 1 cut(s) 216
BpmI CTGGAG 1 cut(s) 578
Bpu10I CCTNAGC 1 cut(s) 5
Bpu1102I GCTNAGC 1 cut(s) 1517
Bpu14I TTCGAA 1 cut(s) 1149
BpuEI CTTGAG 2 cut(s) 1160, 1190
BpuMI CCSGG 1 cut(s) 1273
Bsc4I CCNNNNNNNGG 4 cut(s) 73, 1184, 1185, 1278
Bse1I ACTGG 1 cut(s) 913
Bse3DI GCAATG 2 cut(s) 167, 1248
BseBI CCWGG 1 cut(s) 435
BseGI GGATG 7 cut(s) 520, 1056, 1063, 1347, 1366, 1423, 1634
BseLI CCNNNNNNNGG 4 cut(s) 73, 1184, 1185, 1278
BseMI GCAATG 2 cut(s) 167, 1248
BseMII CTCAG 3 cut(s) 123, 210, 654
BseNI ACTGG 1 cut(s) 913
BseXI GCAGC 4 cut(s) 703, 1225, 1230, 1620
Bsh1236I CGCG 1 cut(s) 42
BshFI GGCC 1 cut(s) 1119
BsiHKCI CYCGRG 1 cut(s) 1014
BsiSI CCGG 1 cut(s) 1272
BslI CCNNNNNNNGG 4 cut(s) 73, 1184, 1185, 1278
BsmI GAATGC 1 cut(s) 1453
BsnI GGCC 1 cut(s) 1119
BsoBI CYCGRG 1 cut(s) 1014
Bsp119I TTCGAA 1 cut(s) 1149
Bsp1286I GDGCHC 2 cut(s) 1110, 1425
Bsp143I GATC 5 cut(s) 553, 933, 993, 1575, 1619
Bsp1720I GCTNAGC 1 cut(s) 1517
BspACI CCGC 5 cut(s) 390, 422, 1315, 1338, 1498
BspANI GGCC 1 cut(s) 1119
BspCNI CTCAG 3 cut(s) 122, 209, 655
BspFNI CGCG 1 cut(s) 42
BspT104I TTCGAA 1 cut(s) 1149
BspTI CTTAAG 1 cut(s) 1310
BsrDI GCAATG 2 cut(s) 167, 1248
BsrI ACTGG 1 cut(s) 913
BssMI GATC 5 cut(s) 553, 933, 993, 1575, 1619
BssSI CACGAG 1 cut(s) 1587
Bst2BI CACGAG 1 cut(s) 1587
Bst2UI CCWGG 1 cut(s) 435
Bst4CI ACNGT 4 cut(s) 215, 464, 687, 869
Bst6I CTCTTC 3 cut(s) 311, 810, 1146
BstAFI CTTAAG 1 cut(s) 1310
BstBI TTCGAA 1 cut(s) 1149
BstC8I GCNNGC 1 cut(s) 1606
BstDEI CTNAG 7 cut(s) 5, 109, 196, 269, 663, 738, 1517
BstF5I GGATG 7 cut(s) 520, 1056, 1063, 1347, 1366, 1423, 1634
BstFNI CGCG 1 cut(s) 42
BstHHI GCGC 2 cut(s) 1138, 1295
BstKTI GATC 5 cut(s) 556, 936, 996, 1578, 1622
BstMBI GATC 5 cut(s) 553, 933, 993, 1575, 1619
BstMWI GCNNNNNNNGC 3 cut(s) 48, 1315, 1497
BstNI CCWGG 1 cut(s) 435
BstNSI RCATGY 1 cut(s) 710
BstSCI CCNGG 2 cut(s) 433, 1271
BstSFI CTRYAG 2 cut(s) 460, 1593
BstUI CGCG 1 cut(s) 42
BstV1I GCAGC 4 cut(s) 703, 1225, 1230, 1620
BstV2I GAAGAC 1 cut(s) 216
BstX2I RGATCY 1 cut(s) 933
BstYI RGATCY 1 cut(s) 933
BsuRI GGCC 1 cut(s) 1119
BtgZI GCGATG 1 cut(s) 413
BtrI CACGTC 1 cut(s) 1393
BtsCI GGATG 7 cut(s) 520, 1056, 1063, 1347, 1366, 1423, 1634
BtsI GCAGTG 1 cut(s) 58
BtsIMutI CAGTG 3 cut(s) 58, 204, 469
Cac8I GCNNGC 1 cut(s) 1606
CaiI CAGNNNCTG 1 cut(s) 1614
CfoI GCGC 2 cut(s) 1138, 1295
Cfr13I GGNCC 2 cut(s) 860, 1226
Csp6I GTAC 2 cut(s) 660, 1039
CspCI CAANNNNNGTGG 2 cut(s) 1171, 1206
CviAII CATG 2 cut(s) 125, 707
CviQI GTAC 2 cut(s) 660, 1039
DdeI CTNAG 7 cut(s) 5, 109, 196, 269, 663, 738, 1517
DpnI GATC 5 cut(s) 555, 935, 995, 1577, 1621
DpnII GATC 5 cut(s) 553, 933, 993, 1575, 1619
DrdI GACNNNNNNGTC 1 cut(s) 1397
DriI GACNNNNNGTC 1 cut(s) 871
DseDI GACNNNNNNGTC 1 cut(s) 1397
Eam1104I CTCTTC 3 cut(s) 311, 810, 1146
Eam1105I GACNNNNNGTC 1 cut(s) 871
EarI CTCTTC 3 cut(s) 311, 810, 1146
Eco24I GRGCYC 2 cut(s) 1110, 1425
Eco32I GATATC 2 cut(s) 1284, 1382
Eco47I GGWCC 2 cut(s) 860, 1226
Eco57I CTGAAG 2 cut(s) 269, 1592
Eco88I CYCGRG 1 cut(s) 1014
EcoRII CCWGG 1 cut(s) 433
EcoRV GATATC 2 cut(s) 1284, 1382
EcoT22I ATGCAT 1 cut(s) 679
EcoT38I GRGCYC 2 cut(s) 1110, 1425
FaeI CATG 2 cut(s) 128, 710
FatI CATG 2 cut(s) 124, 706
FauI CCCGC 1 cut(s) 1331
FblI GTMKAC 1 cut(s) 1401
Fnu4HI GCNGC 6 cut(s) 391, 717, 1219, 1239, 1316, 1609
FokI GGATG 6 cut(s) 527, 1063, 1070, 1354, 1373, 1430
FriOI GRGCYC 2 cut(s) 1110, 1425
Fsp4HI GCNGC 6 cut(s) 391, 717, 1219, 1239, 1316, 1609
FspBI CTAG 2 cut(s) 152, 1442
GlaI GCGC 2 cut(s) 1137, 1294
GluI GCNGC 6 cut(s) 391, 717, 1219, 1239, 1316, 1609
GsuI CTGGAG 1 cut(s) 578
HaeIII GGCC 1 cut(s) 1119
HapII CCGG 1 cut(s) 1272
HhaI GCGC 2 cut(s) 1138, 1295
Hin1II CATG 2 cut(s) 128, 710
Hin6I GCGC 2 cut(s) 1136, 1293
HinP1I GCGC 2 cut(s) 1136, 1293
HindIII AAGCTT 2 cut(s) 494, 1094
HpaII CCGG 1 cut(s) 1272
HphI GGTGA 2 cut(s) 661, 818
Hpy166II GTNNAC 5 cut(s) 704, 982, 1070, 1229, 1402
Hpy188I TCNGA 8 cut(s) 112, 288, 315, 1132, 1257, 1288, 1390, 1572
Hpy8I GTNNAC 5 cut(s) 704, 982, 1070, 1229, 1402
Hpy99I CGWCG 1 cut(s) 42
HpyAV CCTTC 6 cut(s) 480, 533, 829, 887, 1041, 1395
HpyCH4III ACNGT 4 cut(s) 215, 464, 687, 869
HpyCH4IV ACGT 4 cut(s) 37, 407, 1353, 1392
HpyCH4V TGCA 7 cut(s) 102, 677, 719, 974, 1218, 1241, 1369
HpyF10VI GCNNNNNNNGC 3 cut(s) 48, 1315, 1497
HpyF3I CTNAG 7 cut(s) 5, 109, 196, 269, 663, 738, 1517
HpySE526I ACGT 4 cut(s) 37, 407, 1353, 1392
Hsp92II CATG 2 cut(s) 128, 710
HspAI GCGC 2 cut(s) 1136, 1293
Kzo9I GATC 5 cut(s) 553, 933, 993, 1575, 1619
Lsp1109I GCAGC 4 cut(s) 703, 1225, 1230, 1620
LweI GCATC 5 cut(s) 961, 1041, 1123, 1332, 1447
MaeI CTAG 2 cut(s) 152, 1442
MaeII ACGT 4 cut(s) 37, 407, 1353, 1392
MaeIII GTNAC 4 cut(s) 403, 439, 681, 1192
MalI GATC 5 cut(s) 555, 935, 995, 1577, 1621
MboI GATC 5 cut(s) 553, 933, 993, 1575, 1619
MflI RGATCY 1 cut(s) 933
MhlI GDGCHC 2 cut(s) 1110, 1425
MluCI AATT 8 cut(s) 69, 158, 177, 290, 382, 1000, 1526, 1550
MlyI GAGTC 3 cut(s) 674, 1037, 1382
Mph1103I ATGCAT 1 cut(s) 679
MseI TTAA 8 cut(s) 386, 473, 546, 566, 732, 1113, 1311, 1529
MslI CAYNNNNRTG 2 cut(s) 51, 711
MspCI CTTAAG 1 cut(s) 1310
MspI CCGG 1 cut(s) 1272
MspR9I CCNGG 2 cut(s) 435, 1273
Mva1269I GAATGC 1 cut(s) 1453
MvaI CCWGG 1 cut(s) 435
MvnI CGCG 1 cut(s) 42
MwoI GCNNNNNNNGC 3 cut(s) 48, 1315, 1497
NciI CCSGG 1 cut(s) 1273
NdeII GATC 5 cut(s) 553, 933, 993, 1575, 1619
NlaIII CATG 2 cut(s) 128, 710
NmuCI GTSAC 1 cut(s) 439
NsiI ATGCAT 1 cut(s) 679
NspI RCATGY 1 cut(s) 710
NspV TTCGAA 1 cut(s) 1149
PaeR7I CTCGAG 1 cut(s) 1014
PciI ACATGT 1 cut(s) 706
PctI GAATGC 1 cut(s) 1453
PfeI GAWTC 7 cut(s) 29, 113, 121, 226, 242, 373, 923
PkrI GCNGC 6 cut(s) 392, 718, 1220, 1240, 1317, 1610
PleI GAGTC 3 cut(s) 673, 1036, 1381
PpsI GAGTC 3 cut(s) 673, 1036, 1381
PscI ACATGT 1 cut(s) 706
PshBI ATTAAT 1 cut(s) 1529
PsiI TTATAA 1 cut(s) 774
Psp1406I AACGTT 1 cut(s) 407
Psp6I CCWGG 1 cut(s) 433
PspGI CCWGG 1 cut(s) 433
PspPI GGNCC 2 cut(s) 860, 1226
PstNI CAGNNNCTG 1 cut(s) 1614
PsuI RGATCY 1 cut(s) 933
RsaI GTAC 2 cut(s) 661, 1040
RsaNI GTAC 2 cut(s) 660, 1039
RseI CAYNNNNRTG 2 cut(s) 51, 711
SaqAI TTAA 8 cut(s) 386, 473, 546, 566, 732, 1113, 1311, 1529
SatI GCNGC 6 cut(s) 391, 717, 1219, 1239, 1316, 1609
Sau3AI GATC 5 cut(s) 553, 933, 993, 1575, 1619
Sau96I GGNCC 2 cut(s) 860, 1226
ScaI AGTACT 1 cut(s) 661
SchI GAGTC 3 cut(s) 674, 1037, 1382
ScrFI CCNGG 2 cut(s) 435, 1273
SduI GDGCHC 2 cut(s) 1110, 1425
SfaNI GCATC 5 cut(s) 961, 1041, 1123, 1332, 1447
SfcI CTRYAG 2 cut(s) 460, 1593
Sfr274I CTCGAG 1 cut(s) 1014
SfuI TTCGAA 1 cut(s) 1149
SinI GGWCC 2 cut(s) 860, 1226
SlaI CTCGAG 1 cut(s) 1014
SmiMI CAYNNNNRTG 2 cut(s) 51, 711
SmlI CTYRAG 4 cut(s) 1014, 1139, 1205, 1310
SmoI CTYRAG 4 cut(s) 1014, 1139, 1205, 1310
Sse9I AATT 8 cut(s) 69, 158, 177, 290, 382, 1000, 1526, 1550
SsiI CCGC 5 cut(s) 390, 422, 1315, 1338, 1498
SspMI CTAG 2 cut(s) 152, 1442
StyD4I CCNGG 2 cut(s) 433, 1271
TaaI ACNGT 4 cut(s) 215, 464, 687, 869
TaiI ACGT 4 cut(s) 40, 410, 1356, 1395
TaqI TCGA 4 cut(s) 91, 376, 1015, 1149
TasI AATT 8 cut(s) 69, 158, 177, 290, 382, 1000, 1526, 1550
TatI WGTACW 1 cut(s) 659
TauI GCSGC 2 cut(s) 393, 1318
TfiI GAWTC 7 cut(s) 29, 113, 121, 226, 242, 373, 923
Tru1I TTAA 8 cut(s) 386, 473, 546, 566, 732, 1113, 1311, 1529
Tru9I TTAA 8 cut(s) 386, 473, 546, 566, 732, 1113, 1311, 1529
TscAI CASTG 3 cut(s) 58, 204, 469
TseFI GTSAC 1 cut(s) 439
TseI GCWGC 4 cut(s) 716, 1218, 1238, 1608
Tsp45I GTSAC 1 cut(s) 439
TspDTI ATGAA 6 cut(s) 35, 156, 171, 587, 994, 1377
TspRI CASTG 3 cut(s) 58, 204, 469
Vha464I CTTAAG 1 cut(s) 1310
VpaK11BI GGWCC 2 cut(s) 860, 1226
VspI ATTAAT 1 cut(s) 1529
XapI RAATTY 1 cut(s) 382
XbaI TCTAGA 1 cut(s) 1441
XceI RCATGY 1 cut(s) 710
XhoI CTCGAG 1 cut(s) 1014
XmiI GTMKAC 1 cut(s) 1401
XspI CTAG 2 cut(s) 152, 1442
ZrmI AGTACT 1 cut(s) 661
Zsp2I ATGCAT 1 cut(s) 679
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.