Prupe.5G009500_v2.0.a1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Forward (+)
987112 .. 990574
3463 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G009500.1

Sequence Viewer

Length: 1689 bp
ATGGCGTTTCATGGTGCTTTGCATTCGCTGCGATCTCTCAGCAGGGCGCCCAGGTACCCGTTGTCTTACCTTGTTCATTCACCAATTTCATCCTCTCTCTTTTCAACCCTTTACGCTCAATCAAACTCATTGCACGATGAACATCGGATCAAGAGCCAATCTACTCTTGACGAAAGTTTTGTACTTGATCGACTCTCTAATCTGCTGCCAATTTCCCGTAGTAATAGTTCAACTGCAACCCTATTTGAACCCAGTAATTCGGATAAGCAGATAGAAATTAGGACCGTTGATGGATTTTTATTGCCCGACGAGAAATTACGTGGGGTTTTTCTTCAGAAATTGAGGGGTACGGCTGCAATTGAGCATGCTTTAGACAATGGTGGTGTGGATTTGAGTGTTGATGTTGTTGCACAAGTAGTGAATAGAGGGGGTTTAGGTGCAGAAGCAATGCTTGTATTTTTTAATTGGGCGATTAGGAAGCCCACCATAGCTAAATATATCGAAACTTACCATATAATCCTCAAAGCATTAGGCAGAAGAAAGTTCTTTACACATATGATGCAAATTTTGCATCACATGAGGGCCCAGGGTATAAGTCCCAATTTAGAGACCATATCGATTGTAATGGATAGTTTCGTGAGGGCTCAACATGTGTCTAAGGCAATCCAAATGTTCCGAAACTTGGAAGAAATTGGTTTGGAGTGTGATACTGAGTCTTTGAATTTGCTTTTGCAATGTCTTTGTCAGAGATCCCATGTTGGTGCTGCAAATTCGTTTCTGAATTCAGTCAAGGGGAAGATACAATTCAATGGTAATACATATAATATTATTATTGGAGGGTGGTCAAGACATGGCAGAGTTAGTGAAATCGAGAGGATTTTGGAAGCAATGGTAGCAGATGGATTTAGTGCTGATAGTTCAACTTTCAGTTTCATTCTTGAGGGTTTAGGGAGAGCTGGTCGTATTGATGATGCTGTTGAGATTTTTGATAGCATGAAGGGGAAAGGTTGCATGCCAGACACCAGAGTTTATAATGCTATGATTTCTAACTTTATCTCTGTTAGAAATTTTGACGAATGTGTGAGATACTATAAGGGTATGTCGAGTAATAGCTGTGATCCAAATATTGATACTTATACCAAATTGATTGCTGCTTTCCTTAAAGCCCGAAAAGTAGCTGGTGCACTCGAAATGTTTGATGAGATGTTAGGTCGAGGACTTGTTCCCACTACAGGGACAATAACCTCCTTTATTGAACCCTTGTGTAGCTATGGTCCACCCTATGCTGCTATGATGATCTACAAGAAAGCAAGAAAGGTTGGATGCAGAATATCACTGAGTGCTTATAAGCTATTGCTTATGCGACTTTCTAGGTTTGGTAAATGTGGAATGTTGCTAAACATTTGGGAAGATATGCAGGAATGTGGATATGCTTCAGATAAGGAAGTTTATGATTATGTAATTAACGGACTTTGCAACATAGGGCACCTTGAAAATGCTGTACTTGTCATGGAAGAGTCTTTGCAGAAAGGCTTTTGCCCAAGTAGGCTTGTTTATAGCAAACTAAACAACAAACTACTTGCTTCAAATAAAGTAGAGAGGGCTTATAAGCTATTTTTAAAGATTAAACATGCTCGTCGCTATGACAATGCACAGAGATTTTGGCGTTCTAAGGGATGGCATTTCTGA

Protein Analysis

563

Amino Acids

63.26

Weight (kDa)

9.13

Isoelectric Point (pI)

42.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 1032, 1347, 1608
Acc65I GGTACC 1 cut(s) 54
AccB1I GGYRCC 3 cut(s) 46, 54, 1485
AclWI GGATC 3 cut(s) 155, 744, 1112
AcsI RAATTY 5 cut(s) 564, 721, 769, 781, 1066
AcuI CTGAAG 2 cut(s) 317, 1419
AcyI GRCGYC 1 cut(s) 47
AdeI CACNNNGTG 1 cut(s) 1340
AfaI GTAC 4 cut(s) 56, 183, 349, 1503
AfiI CCNNNNNNNGG 3 cut(s) 682, 1232, 1233
AflIII ACRYGT 1 cut(s) 649
AgsI TTSAA 9 cut(s) 105, 231, 248, 721, 808, 921, 1256, 1493, 1587
AjnI CCWGG 2 cut(s) 50, 585
AluBI AGCT 7 cut(s) 491, 956, 1113, 1178, 1269, 1351, 1612
AluI AGCT 7 cut(s) 491, 956, 1113, 1178, 1269, 1351, 1612
Alw21I GWGCWC 1 cut(s) 1186
Alw26I GTCTC 1 cut(s) 602
Alw44I GTGCAC 1 cut(s) 1182
AlwI GGATC 3 cut(s) 155, 744, 1112
AoxI GGCC 1 cut(s) 582
ApaI GGGCCC 1 cut(s) 586
ApaLI GTGCAC 1 cut(s) 1182
ApeKI GCWGC 6 cut(s) 28, 205, 353, 764, 1151, 1286
ApoI RAATTY 5 cut(s) 564, 721, 769, 781, 1066
ArsI GACNNNNNNTTYG 2 cut(s) 161, 193
Asp718I GGTACC 1 cut(s) 54
AspLEI GCGC 1 cut(s) 49
AspS9I GGNCC 4 cut(s) 282, 582, 583, 1274
AsuHPI GGTGA 1 cut(s) 72
AvaII GGWCC 2 cut(s) 282, 1274
BaeGI GKGCMC 3 cut(s) 586, 1186, 1488
BanI GGYRCC 3 cut(s) 46, 54, 1485
BanII GRGCYC 2 cut(s) 586, 646
Bbv12I GWGCWC 1 cut(s) 1186
BbvI GCAGC 6 cut(s) 15, 192, 340, 751, 1138, 1273
BccI CCATC 3 cut(s) 284, 893, 1671
BceAI ACGGC 1 cut(s) 366
BciT130I CCWGG 2 cut(s) 52, 587
BcoDI GTCTC 1 cut(s) 602
BfaI CTAG 1 cut(s) 1371
BfmI CTRYAG 1 cut(s) 1230
BfoI RGCGCY 1 cut(s) 50
BisI GCNGC 6 cut(s) 29, 206, 354, 765, 1152, 1287
BlsI GCNGC 6 cut(s) 30, 207, 355, 766, 1153, 1288
Bme1390I CCNGG 2 cut(s) 52, 587
Bme18I GGWCC 2 cut(s) 282, 1274
BmgT120I GGNCC 4 cut(s) 282, 582, 583, 1274
BmiI GGNNCC 4 cut(s) 48, 56, 584, 1487
BmrFI CCNGG 2 cut(s) 52, 587
BmrI ACTGGG 1 cut(s) 246
BmsI GCATC 4 cut(s) 549, 580, 961, 1313
BmuI ACTGGG 1 cut(s) 246
BpuEI CTTGAG 1 cut(s) 959
Bsa29I ATCGAT 1 cut(s) 617
BsaAI YACGTR 1 cut(s) 320
BsaBI GATNNNNATC 1 cut(s) 141
BsaHI GRCGYC 1 cut(s) 47
BsaI GGTCTC 1 cut(s) 602
BsaJI CCNNGG 3 cut(s) 50, 585, 586
BsaXI ACNNNNNCTCC 2 cut(s) 943, 973
Bsc4I CCNNNNNNNGG 3 cut(s) 682, 1232, 1233
Bse1I ACTGG 1 cut(s) 252
Bse3DI GCAATG 4 cut(s) 128, 453, 740, 894
Bse8I GATNNNNATC 1 cut(s) 141
BseBI CCWGG 2 cut(s) 52, 587
BseCI ATCGAT 1 cut(s) 617
BseDI CCNNGG 3 cut(s) 50, 585, 586
BseGI GGATG 3 cut(s) 89, 1328, 1682
BseJI GATNNNNATC 1 cut(s) 141
BseLI CCNNNNNNNGG 3 cut(s) 682, 1232, 1233
BseMI GCAATG 4 cut(s) 128, 453, 740, 894
BseMII CTCAG 3 cut(s) 52, 702, 1328
BseNI ACTGG 1 cut(s) 252
BseSI GKGCMC 3 cut(s) 586, 1186, 1488
BseXI GCAGC 6 cut(s) 15, 192, 340, 751, 1138, 1273
BsgI GTGCAG 1 cut(s) 459
BshFI GGCC 1 cut(s) 584
BshNI GGYRCC 3 cut(s) 46, 54, 1485
BshVI ATCGAT 1 cut(s) 617
BsiHKAI GWGCWC 1 cut(s) 1186
BslFI GGGAC 2 cut(s) 582, 1249
BslI CCNNNNNNNGG 3 cut(s) 682, 1232, 1233
BsmAI GTCTC 1 cut(s) 602
BsmFI GGGAC 2 cut(s) 582, 1249
BsmI GAATGC 1 cut(s) 22
BsnI GGCC 1 cut(s) 584
Bso31I GGTCTC 1 cut(s) 602
Bsp120I GGGCCC 1 cut(s) 582
Bsp1286I GDGCHC 4 cut(s) 586, 646, 1186, 1488
Bsp143I GATC 6 cut(s) 32, 147, 187, 749, 1117, 1296
BspANI GGCC 1 cut(s) 584
BspCNI CTCAG 3 cut(s) 51, 703, 1329
BspDI ATCGAT 1 cut(s) 617
BspLI GGNNCC 4 cut(s) 48, 56, 584, 1487
BspPI GGATC 3 cut(s) 155, 744, 1112
BspT107I GGYRCC 3 cut(s) 46, 54, 1485
BspTNI GGTCTC 1 cut(s) 602
BsrDI GCAATG 4 cut(s) 128, 453, 740, 894
BsrI ACTGG 1 cut(s) 252
BssECI CCNNGG 3 cut(s) 50, 585, 586
BssMI GATC 6 cut(s) 32, 147, 187, 749, 1117, 1296
BssNI GRCGYC 1 cut(s) 47
Bst2UI CCWGG 2 cut(s) 52, 587
Bst4CI ACNGT 1 cut(s) 286
Bst6I CTCTTC 1 cut(s) 1509
BstACI GRCGYC 1 cut(s) 47
BstAPI GCANNNNNTGC 2 cut(s) 28, 568
BstBAI YACGTR 1 cut(s) 320
BstC8I GCNNGC 2 cut(s) 366, 1013
BstDEI CTNAG 5 cut(s) 38, 657, 711, 1337, 1671
BstF5I GGATG 3 cut(s) 89, 1328, 1682
BstH2I RGCGCY 1 cut(s) 50
BstHHI GCGC 1 cut(s) 49
BstKTI GATC 6 cut(s) 35, 150, 190, 752, 1120, 1299
BstMAI GTCTC 1 cut(s) 602
BstMBI GATC 6 cut(s) 32, 147, 187, 749, 1117, 1296
BstMWI GCNNNNNNNGC 3 cut(s) 28, 568, 893
BstNI CCWGG 2 cut(s) 52, 587
BstNSI RCATGY 4 cut(s) 368, 653, 1015, 1634
BstSCI CCNGG 2 cut(s) 50, 585
BstSFI CTRYAG 1 cut(s) 1230
BstSLI GKGCMC 3 cut(s) 586, 1186, 1488
BstV1I GCAGC 6 cut(s) 15, 192, 340, 751, 1138, 1273
BstX2I RGATCY 1 cut(s) 749
BstYI RGATCY 1 cut(s) 749
Bsu15I ATCGAT 1 cut(s) 617
BsuRI GGCC 1 cut(s) 584
BsuTUI ATCGAT 1 cut(s) 617
BtsCI GGATG 3 cut(s) 89, 1328, 1682
BtsIMutI CAGTG 1 cut(s) 1334
Cac8I GCNNGC 2 cut(s) 366, 1013
CfoI GCGC 1 cut(s) 49
Cfr13I GGNCC 4 cut(s) 282, 582, 583, 1274
ClaI ATCGAT 1 cut(s) 617
Csp6I GTAC 4 cut(s) 55, 182, 348, 1502
CviQI GTAC 4 cut(s) 55, 182, 348, 1502
DdeI CTNAG 5 cut(s) 38, 657, 711, 1337, 1671
DinI GGCGCC 1 cut(s) 48
DpnI GATC 6 cut(s) 34, 149, 189, 751, 1119, 1298
DpnII GATC 6 cut(s) 32, 147, 187, 749, 1117, 1296
DraI TTTAAA 1 cut(s) 1620
DraIII CACNNNGTG 1 cut(s) 1340
Eam1104I CTCTTC 1 cut(s) 1509
EarI CTCTTC 1 cut(s) 1509
Eco24I GRGCYC 2 cut(s) 586, 646
Eco31I GGTCTC 1 cut(s) 602
Eco47I GGWCC 2 cut(s) 282, 1274
Eco57I CTGAAG 2 cut(s) 317, 1419
EcoO109I RGGNCCY 1 cut(s) 582
EcoRI GAATTC 1 cut(s) 781
EcoRII CCWGG 2 cut(s) 50, 585
EcoT38I GRGCYC 2 cut(s) 586, 646
EgeI GGCGCC 1 cut(s) 48
EheI GGCGCC 1 cut(s) 48
FalI AAGNNNNNCTT 2 cut(s) 435, 467
FaqI GGGAC 2 cut(s) 582, 1249
FauNDI CATATG 1 cut(s) 555
Fnu4HI GCNGC 6 cut(s) 29, 206, 354, 765, 1152, 1287
FokI GGATG 2 cut(s) 76, 1335
FriOI GRGCYC 2 cut(s) 586, 646
Fsp4HI GCNGC 6 cut(s) 29, 206, 354, 765, 1152, 1287
FspBI CTAG 1 cut(s) 1371
GlaI GCGC 1 cut(s) 48
GluI GCNGC 6 cut(s) 29, 206, 354, 765, 1152, 1287
HaeII RGCGCY 1 cut(s) 50
HaeIII GGCC 1 cut(s) 584
HhaI GCGC 1 cut(s) 49
Hin1I GRCGYC 1 cut(s) 47
Hin6I GCGC 1 cut(s) 47
HinP1I GCGC 1 cut(s) 47
HinfI GANTC 3 cut(s) 192, 713, 1517
HphI GGTGA 1 cut(s) 72
Hpy166II GTNNAC 2 cut(s) 1184, 1277
Hpy188I TCNGA 8 cut(s) 147, 262, 336, 677, 747, 780, 1438, 1688
Hpy188III TCNNGA 6 cut(s) 151, 167, 637, 846, 871, 938
Hpy8I GTNNAC 2 cut(s) 1184, 1277
Hpy99I CGWCG 2 cut(s) 311, 1641
HpyAV CCTTC 1 cut(s) 991
HpyCH4III ACNGT 1 cut(s) 286
HpyCH4IV ACGT 1 cut(s) 319
HpyF10VI GCNNNNNNNGC 3 cut(s) 28, 568, 893
HpyF3I CTNAG 5 cut(s) 38, 657, 711, 1337, 1671
HpySE526I ACGT 1 cut(s) 319
Hsp92I GRCGYC 1 cut(s) 47
HspAI GCGC 1 cut(s) 47
KasI GGCGCC 1 cut(s) 46
KpnI GGTACC 1 cut(s) 58
Kzo9I GATC 6 cut(s) 32, 147, 187, 749, 1117, 1296
Lsp1109I GCAGC 6 cut(s) 15, 192, 340, 751, 1138, 1273
LweI GCATC 4 cut(s) 549, 580, 961, 1313
MaeI CTAG 1 cut(s) 1371
MaeII ACGT 1 cut(s) 319
MalI GATC 6 cut(s) 34, 149, 189, 751, 1119, 1298
MboI GATC 6 cut(s) 32, 147, 187, 749, 1117, 1296
MboII GAAGA 6 cut(s) 323, 549, 698, 808, 1421, 1526
MfeI CAATTG 1 cut(s) 357
MflI RGATCY 1 cut(s) 749
MhlI GDGCHC 4 cut(s) 586, 646, 1186, 1488
Mly113I GGCGCC 1 cut(s) 47
MlyI GAGTC 3 cut(s) 186, 722, 1526
MmeI TCCRAC 1 cut(s) 1300
MseI TTAA 5 cut(s) 462, 1161, 1464, 1619, 1626
MslI CAYNNNNRTG 1 cut(s) 759
MspR9I CCNGG 2 cut(s) 52, 587
MunI CAATTG 1 cut(s) 357
Mva1269I GAATGC 1 cut(s) 22
MvaI CCWGG 2 cut(s) 52, 587
MwoI GCNNNNNNNGC 3 cut(s) 28, 568, 893
NarI GGCGCC 1 cut(s) 47
NdeI CATATG 1 cut(s) 555
NdeII GATC 6 cut(s) 32, 147, 187, 749, 1117, 1296
NlaIV GGNNCC 4 cut(s) 48, 56, 584, 1487
NspI RCATGY 4 cut(s) 368, 653, 1015, 1634
PaeI GCATGC 2 cut(s) 368, 1015
PasI CCCWGGG 1 cut(s) 586
PciI ACATGT 1 cut(s) 649
PctI GAATGC 1 cut(s) 22
PkrI GCNGC 6 cut(s) 30, 207, 355, 766, 1153, 1288
PleI GAGTC 3 cut(s) 186, 721, 1525
PluTI GGCGCC 1 cut(s) 50
PpsI GAGTC 3 cut(s) 186, 721, 1525
Ppu21I YACGTR 1 cut(s) 320
PscI ACATGT 1 cut(s) 649
PsiI TTATAA 3 cut(s) 1032, 1347, 1608
Psp6I CCWGG 2 cut(s) 50, 585
PspGI CCWGG 2 cut(s) 50, 585
PspN4I GGNNCC 4 cut(s) 48, 56, 584, 1487
PspOMI GGGCCC 1 cut(s) 582
PspPI GGNCC 4 cut(s) 282, 582, 583, 1274
PsrI GAACNNNNNNTAC 2 cut(s) 211, 243
PsuI RGATCY 1 cut(s) 749
RsaI GTAC 4 cut(s) 56, 183, 349, 1503
RsaNI GTAC 4 cut(s) 55, 182, 348, 1502
RseI CAYNNNNRTG 1 cut(s) 759
SaqAI TTAA 5 cut(s) 462, 1161, 1464, 1619, 1626
SatI GCNGC 6 cut(s) 29, 206, 354, 765, 1152, 1287
Sau3AI GATC 6 cut(s) 32, 147, 187, 749, 1117, 1296
Sau96I GGNCC 4 cut(s) 282, 582, 583, 1274
SchI GAGTC 3 cut(s) 186, 722, 1526
ScrFI CCNGG 2 cut(s) 52, 587
SduI GDGCHC 4 cut(s) 586, 646, 1186, 1488
SfaNI GCATC 4 cut(s) 549, 580, 961, 1313
SfcI CTRYAG 1 cut(s) 1230
SfoI GGCGCC 1 cut(s) 48
SinI GGWCC 2 cut(s) 282, 1274
SmiMI CAYNNNNRTG 1 cut(s) 759
SmlI CTYRAG 1 cut(s) 938
SmoI CTYRAG 1 cut(s) 938
SphI GCATGC 2 cut(s) 368, 1015
SspDI GGCGCC 1 cut(s) 46
SspI AATATT 2 cut(s) 826, 1126
SspMI CTAG 1 cut(s) 1371
StyD4I CCNGG 2 cut(s) 50, 585
TaaI ACNGT 1 cut(s) 286
TaiI ACGT 1 cut(s) 322
TaqI TCGA 7 cut(s) 190, 501, 617, 870, 1103, 1188, 1213
TatI WGTACW 2 cut(s) 181, 1501
Tru1I TTAA 5 cut(s) 462, 1161, 1464, 1619, 1626
Tru9I TTAA 5 cut(s) 462, 1161, 1464, 1619, 1626
TscAI CASTG 1 cut(s) 1341
TseI GCWGC 6 cut(s) 28, 205, 353, 764, 1151, 1286
TspDTI ATGAA 5 cut(s) 65, 78, 153, 922, 1010
TspGWI ACGGA 1 cut(s) 1482
TspRI CASTG 1 cut(s) 1341
VneI GTGCAC 1 cut(s) 1182
VpaK11BI GGWCC 2 cut(s) 282, 1274
XapI RAATTY 5 cut(s) 564, 721, 769, 781, 1066
XceI RCATGY 4 cut(s) 368, 653, 1015, 1634
XspI CTAG 1 cut(s) 1371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.