Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001315

Physical Location & Seq

Genomic Coordinates Forward (+)

12448553 .. 12449102

Gene Structure 550 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0156600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGACTCCTACAACCTATCATGCTACCCACAACCGGACCCTTCCGCCACCTGATCAAGTGATAACTACTGAATCAAAAAACATTCTTCTGAGGCACATGTATCAGCAGCATGCTGAAGAGAAGTTGAGACAAAAGCGAGCTGCATCAGAAAATCTTTTACCAGAGCATGGATGCAAGCAACTTAAGGGTTCTGTCTCAGATAAGTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

69

Amino Acids

7.89

Weight (kDa)

9.3

Isoelectric Point (pI)

66.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DDA1	PF10172	1 - 38	1.1e-15	Det1 complexing ubiquitin ligase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43820
fragaria_vesca	FvH4_5g24880 FvH4_5g25350 FvH4_5g25520
malus_domestica	MD16G1284000.v1.1
prunus_persica	Prupe.5G009500_v2.0.a1
pyrus_communis	pycom16g26010
rosa_chinensis	RchiOBHm_Chr6g0271861 RchiOBHm_Chr6g0271871 RchiOBHm_Chr6g0271981 RchiOBHm_Chr7g0215761 RchiOBHm_Chr7g0215771 RchiOBHm_Chr7g0215901 RchiOBHm_Chr7g0217231 RchiOBHm_Chr7g0219831
rosa_laevigata	RLG00000002611 RLG00000002625 RLG00000013566
rosa_multiflora	Rmu_sc0000055.1_g000008 Rmu_sc0000055.1_g000009 Rmu_sc0000516.1_g000005 Rmu_sc0000516.1_g000006 Rmu_sc0004379.1_g000016 Rmu_sc0006240.1_g000009 Rmu_sc0007857.1_g000006 Rmu_sc0016364.1_g000002 Rmu_sc0016407.1_g000001 Rmu_sc0023052.1_g000001
rosa_roxburghii	Rroxscaffold_2G00114980 Rroxscaffold_3G00243850 Rroxscaffold_5G00342010 Rroxscaffold_7G00186190
rosa_rugosa	Rorug06G0064100 Rorug07G0156600 Rorug07G0157900 Rorug07G0158000
rosa_samantha	Rh1BG116200 Rh6AG181800 Rh6BG185400 Rh6CG182900 Rh6CG183200 Rh6DG174300 Rh6DG174600 Rh7AG294600 Rh7AG306400 Rh7AG306500 Rh7BG286400 Rh7CG314600 Rh7CG325500 Rh7DG296900 Rh7DG299400 Rh7DG306200
rosa_wichuraiana	Rw6G015640 Rw7G026030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	167
AciI	CCGC	1 cut(s)	44
AcuI	CTGAAG	1 cut(s)	135
AfiI	CCNNNNNNNGG	2 cut(s)	33, 167
AflII	CTTAAG	1 cut(s)	182
AflIII	ACRYGT	1 cut(s)	96
AluBI	AGCT	1 cut(s)	140
AluI	AGCT	1 cut(s)	140
Alw26I	GTCTC	2 cut(s)	121, 199
ApeKI	GCWGC	2 cut(s)	106, 140
AspS9I	GGNCC	1 cut(s)	36
AvaII	GGWCC	1 cut(s)	36
BbvI	GCAGC	2 cut(s)	118, 127
BclI	TGATCA	1 cut(s)	52
BcoDI	GTCTC	2 cut(s)	121, 199
BfrI	CTTAAG	1 cut(s)	182
BisI	GCNGC	2 cut(s)	107, 141
BlsI	GCNGC	2 cut(s)	108, 142
Bme18I	GGWCC	1 cut(s)	36
BmgT120I	GGNCC	1 cut(s)	36
BmiI	GGNNCC	1 cut(s)	38
BmsI	GCATC	2 cut(s)	152, 161
BsaWI	WCCGGW	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	2 cut(s)	33, 167
BseGI	GGATG	1 cut(s)	176
BseLI	CCNNNNNNNGG	2 cut(s)	33, 167
BseMII	CTCAG	2 cut(s)	80, 210
BseXI	GCAGC	2 cut(s)	118, 127
BsiSI	CCGG	1 cut(s)	34
BslI	CCNNNNNNNGG	2 cut(s)	33, 167
BsmAI	GTCTC	2 cut(s)	121, 199
Bsp143I	GATC	1 cut(s)	52
BspACI	CCGC	1 cut(s)	44
BspCNI	CTCAG	2 cut(s)	81, 209
BspLI	GGNNCC	1 cut(s)	38
BspTI	CTTAAG	1 cut(s)	182
BssMI	GATC	1 cut(s)	52
Bst6I	CTCTTC	1 cut(s)	111
BstAFI	CTTAAG	1 cut(s)	182
BstC8I	GCNNGC	3 cut(s)	111, 138, 176
BstDEI	CTNAG	2 cut(s)	89, 196
BstF5I	GGATG	1 cut(s)	176
BstKTI	GATC	1 cut(s)	55
BstMAI	GTCTC	2 cut(s)	121, 199
BstMBI	GATC	1 cut(s)	52
BstNSI	RCATGY	2 cut(s)	100, 113
BstV1I	GCAGC	2 cut(s)	118, 127
BtsCI	GGATG	1 cut(s)	176
Cac8I	GCNNGC	3 cut(s)	111, 138, 176
Cfr13I	GGNCC	1 cut(s)	36
CviAII	CATG	4 cut(s)	20, 97, 110, 167
CviJI	RGCY	1 cut(s)	140
CviKI_1	RGCY	1 cut(s)	140
DdeI	CTNAG	2 cut(s)	89, 196
DpnI	GATC	1 cut(s)	54
DpnII	GATC	1 cut(s)	52
Eam1104I	CTCTTC	1 cut(s)	111
EarI	CTCTTC	1 cut(s)	111
EciI	GGCGGA	1 cut(s)	33
Eco47I	GGWCC	1 cut(s)	36
Eco57I	CTGAAG	1 cut(s)	135
FaeI	CATG	4 cut(s)	23, 100, 113, 170
FaiI	YATR	4 cut(s)	21, 98, 111, 168
FatI	CATG	4 cut(s)	19, 96, 109, 166
FbaI	TGATCA	1 cut(s)	52
Fnu4HI	GCNGC	2 cut(s)	107, 141
FokI	GGATG	1 cut(s)	183
Fsp4HI	GCNGC	2 cut(s)	107, 141
GluI	GCNGC	2 cut(s)	107, 141
HapII	CCGG	1 cut(s)	34
Hin1II	CATG	4 cut(s)	23, 100, 113, 170
HinfI	GANTC	2 cut(s)	4, 71
HpaII	CCGG	1 cut(s)	34
Hpy188I	TCNGA	3 cut(s)	90, 148, 199
HpyAV	CCTTC	1 cut(s)	50
HpyCH4V	TGCA	2 cut(s)	143, 174
HpyF3I	CTNAG	2 cut(s)	89, 196
Hsp92II	CATG	4 cut(s)	23, 100, 113, 170
Ksp22I	TGATCA	1 cut(s)	52
Kzo9I	GATC	1 cut(s)	52
LpnPI	CCDG	3 cut(s)	47, 63, 174
Lsp1109I	GCAGC	2 cut(s)	118, 127
LweI	GCATC	2 cut(s)	152, 161
MalI	GATC	1 cut(s)	54
MboI	GATC	1 cut(s)	52
MboII	GAAGA	2 cut(s)	77, 128
MnlI	CCTC	1 cut(s)	84
MseI	TTAA	1 cut(s)	183
MspCI	CTTAAG	1 cut(s)	182
MspI	CCGG	1 cut(s)	34
NdeII	GATC	1 cut(s)	52
NlaIII	CATG	4 cut(s)	23, 100, 113, 170
NlaIV	GGNNCC	1 cut(s)	38
NspI	RCATGY	2 cut(s)	100, 113
PaeI	GCATGC	1 cut(s)	113
PciI	ACATGT	1 cut(s)	96
PfeI	GAWTC	1 cut(s)	71
PflMI	CCANNNNNTGG	1 cut(s)	167
PkrI	GCNGC	2 cut(s)	108, 142
PscI	ACATGT	1 cut(s)	96
PspN4I	GGNNCC	1 cut(s)	38
PspPI	GGNCC	1 cut(s)	36
SaqAI	TTAA	1 cut(s)	183
SatI	GCNGC	2 cut(s)	107, 141
Sau3AI	GATC	1 cut(s)	52
Sau96I	GGNCC	1 cut(s)	36
SetI	ASST	3 cut(s)	17, 52, 142
SfaNI	GCATC	2 cut(s)	152, 161
SinI	GGWCC	1 cut(s)	36
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
SphI	GCATGC	1 cut(s)	113
SsiI	CCGC	1 cut(s)	44
TfiI	GAWTC	1 cut(s)	71
Tru1I	TTAA	1 cut(s)	183
Tru9I	TTAA	1 cut(s)	183
TseI	GCWGC	2 cut(s)	106, 140
Van91I	CCANNNNNTGG	1 cut(s)	167
Vha464I	CTTAAG	1 cut(s)	182
VpaK11BI	GGWCC	1 cut(s)	36
XceI	RCATGY	2 cut(s)	100, 113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.