Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TPR_24 | PF23276 | 240 - 368 | 5.5e-07 | Fungal tetratrico peptide repeats |
| PPR_2 | PF13041 | 274 - 318 | 6.9e-06 | PPR repeat family |
| PPR_3 | PF13812 | 295 - 351 | 8.2e-09 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 301 - 334 | 5.7e-06 | PPR repeat |
| PPR_2 | PF13041 | 309 - 350 | 1.6e-08 | PPR repeat family |
| PPR_long | PF17177 | 321 - 413 | 4.3e-07 | Pentacotripeptide-repeat region of PRORP |
| PPR_2 | PF13041 | 340 - 389 | 4.9e-12 | PPR repeat family |
| PPR_2 | PF13041 | 378 - 423 | 3.9e-08 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 572, 1350, 1611 |
| Acc36I | ACCTGC | 1 cut(s) | 259 |
| AciI | CCGC | 3 cut(s) | 708, 751, 1669 |
| AclWI | GGATC | 1 cut(s) | 1115 |
| AcsI | RAATTY | 3 cut(s) | 146, 225, 1662 |
| AcuI | CTGAAG | 1 cut(s) | 320 |
| AfaI | GTAC | 5 cut(s) | 62, 712, 1091, 1188, 1506 |
| AfeI | AGCGCT | 1 cut(s) | 22 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1177, 1235 |
| AflIII | ACRYGT | 1 cut(s) | 652 |
| AleI | CACNNNNGTG | 1 cut(s) | 1425 |
| Alw26I | GTCTC | 4 cut(s) | 105, 605, 759, 1527 |
| AlwI | GGATC | 1 cut(s) | 1115 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 742 |
| Aor51HI | AGCGCT | 1 cut(s) | 22 |
| ApeKI | GCWGC | 7 cut(s) | 18, 46, 767, 1289, 1343, 1489, 1634 |
| ApoI | RAATTY | 3 cut(s) | 146, 225, 1662 |
| AspLEI | GCGC | 2 cut(s) | 23, 1368 |
| AspS9I | GGNCC | 1 cut(s) | 1277 |
| AsuHPI | GGTGA | 4 cut(s) | 68, 222, 455, 878 |
| AsuII | TTCGAA | 2 cut(s) | 200, 260 |
| AvaII | GGWCC | 1 cut(s) | 1277 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 583, 616 |
| BauI | CACGAG | 1 cut(s) | 191 |
| BbsI | GAAGAC | 1 cut(s) | 156 |
| BbvI | GCAGC | 7 cut(s) | 30, 33, 754, 1276, 1330, 1501, 1621 |
| BccI | CCATC | 7 cut(s) | 39, 58, 287, 622, 865, 896, 1674 |
| BceAI | ACGGC | 1 cut(s) | 1626 |
| BcoDI | GTCTC | 4 cut(s) | 105, 605, 759, 1527 |
| BfaI | CTAG | 2 cut(s) | 1374, 1674 |
| BfmI | CTRYAG | 2 cut(s) | 734, 1558 |
| BfoI | RGCGCY | 1 cut(s) | 24 |
| BfuAI | ACCTGC | 1 cut(s) | 259 |
| BisI | GCNGC | 7 cut(s) | 19, 47, 768, 1290, 1344, 1490, 1635 |
| BlpI | GCTNAGC | 1 cut(s) | 1553 |
| BlsI | GCNGC | 7 cut(s) | 20, 48, 769, 1291, 1345, 1491, 1636 |
| BmcAI | AGTACT | 1 cut(s) | 1091 |
| Bme18I | GGWCC | 1 cut(s) | 1277 |
| BmgT120I | GGNCC | 1 cut(s) | 1277 |
| BmiI | GGNNCC | 2 cut(s) | 587, 1260 |
| BmsI | GCATC | 4 cut(s) | 490, 552, 964, 1407 |
| BpiI | GAAGAC | 1 cut(s) | 156 |
| BpmI | CTGGAG | 1 cut(s) | 1211 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1553 |
| Bpu14I | TTCGAA | 2 cut(s) | 200, 260 |
| BpuEI | CTTGAG | 2 cut(s) | 399, 962 |
| Bsa29I | ATCGAT | 1 cut(s) | 603 |
| BsaI | GGTCTC | 1 cut(s) | 759 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 602, 632 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1177, 1235 |
| Bse1I | ACTGG | 2 cut(s) | 160, 1194 |
| Bse3DI | GCAATG | 4 cut(s) | 41, 456, 897, 1047 |
| BseCI | ATCGAT | 1 cut(s) | 603 |
| BseGI | GGATG | 4 cut(s) | 298, 1331, 1417, 1685 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1177, 1235 |
| BseMI | GCAATG | 4 cut(s) | 41, 456, 897, 1047 |
| BseMII | CTCAG | 1 cut(s) | 705 |
| BseNI | ACTGG | 2 cut(s) | 160, 1194 |
| BseRI | GAGGAG | 2 cut(s) | 326, 598 |
| BseXI | GCAGC | 7 cut(s) | 30, 33, 754, 1276, 1330, 1501, 1621 |
| BshVI | ATCGAT | 1 cut(s) | 603 |
| BsiSI | CCGG | 1 cut(s) | 308 |
| BslFI | GGGAC | 2 cut(s) | 695, 1252 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1177, 1235 |
| BsmAI | GTCTC | 4 cut(s) | 105, 605, 759, 1527 |
| BsmBI | CGTCTC | 1 cut(s) | 105 |
| BsmFI | GGGAC | 2 cut(s) | 695, 1252 |
| Bso31I | GGTCTC | 1 cut(s) | 759 |
| Bsp119I | TTCGAA | 2 cut(s) | 200, 260 |
| Bsp143I | GATC | 4 cut(s) | 961, 1044, 1120, 1299 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1553 |
| BspACI | CCGC | 3 cut(s) | 708, 751, 1669 |
| BspCNI | CTCAG | 1 cut(s) | 706 |
| BspDI | ATCGAT | 1 cut(s) | 603 |
| BspLI | GGNNCC | 2 cut(s) | 587, 1260 |
| BspMAI | CTGCAG | 1 cut(s) | 738 |
| BspMI | ACCTGC | 1 cut(s) | 259 |
| BspPI | GGATC | 1 cut(s) | 1115 |
| BspQI | GCTCTTC | 2 cut(s) | 949, 995 |
| BspT104I | TTCGAA | 2 cut(s) | 200, 260 |
| BspTNI | GGTCTC | 1 cut(s) | 759 |
| BsrDI | GCAATG | 4 cut(s) | 41, 456, 897, 1047 |
| BsrI | ACTGG | 2 cut(s) | 160, 1194 |
| BssMI | GATC | 4 cut(s) | 961, 1044, 1120, 1299 |
| BssSI | CACGAG | 1 cut(s) | 191 |
| Bst2BI | CACGAG | 1 cut(s) | 191 |
| Bst4CI | ACNGT | 2 cut(s) | 115, 616 |
| Bst6I | CTCTTC | 4 cut(s) | 684, 949, 995, 1512 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1037 |
| BstBI | TTCGAA | 2 cut(s) | 200, 260 |
| BstC8I | GCNNGC | 4 cut(s) | 369, 1550, 1639, 1671 |
| BstDEI | CTNAG | 3 cut(s) | 714, 1553, 1568 |
| BstF5I | GGATG | 4 cut(s) | 298, 1331, 1417, 1685 |
| BstH2I | RGCGCY | 1 cut(s) | 24 |
| BstHHI | GCGC | 2 cut(s) | 23, 1368 |
| BstKTI | GATC | 4 cut(s) | 964, 1047, 1123, 1302 |
| BstMAI | GTCTC | 4 cut(s) | 105, 605, 759, 1527 |
| BstMBI | GATC | 4 cut(s) | 961, 1044, 1120, 1299 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 27, 500, 896, 1002, 1037, 1554, 1643, 1652 |
| BstNSI | RCATGY | 2 cut(s) | 371, 656 |
| BstSFI | CTRYAG | 2 cut(s) | 734, 1558 |
| BstV1I | GCAGC | 7 cut(s) | 30, 33, 754, 1276, 1330, 1501, 1621 |
| BstV2I | GAAGAC | 1 cut(s) | 156 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1255 |
| Bsu15I | ATCGAT | 1 cut(s) | 603 |
| BsuTUI | ATCGAT | 1 cut(s) | 603 |
| BtgZI | GCGATG | 1 cut(s) | 833 |
| BtsCI | GGATG | 4 cut(s) | 298, 1331, 1417, 1685 |
| BtsI | GCAGTG | 2 cut(s) | 68, 743 |
| BtsIMutI | CAGTG | 4 cut(s) | 68, 743, 795, 1474 |
| BveI | ACCTGC | 1 cut(s) | 259 |
| Cac8I | GCNNGC | 4 cut(s) | 369, 1550, 1639, 1671 |
| CaiI | CAGNNNCTG | 1 cut(s) | 742 |
| CfoI | GCGC | 2 cut(s) | 23, 1368 |
| Cfr13I | GGNCC | 1 cut(s) | 1277 |
| ClaI | ATCGAT | 1 cut(s) | 603 |
| Csp6I | GTAC | 5 cut(s) | 61, 711, 1090, 1187, 1505 |
| CviAII | CATG | 9 cut(s) | 14, 134, 368, 515, 580, 653, 758, 997, 1513 |
| CviQI | GTAC | 5 cut(s) | 61, 711, 1090, 1187, 1505 |
| DdeI | CTNAG | 3 cut(s) | 714, 1553, 1568 |
| DpnI | GATC | 4 cut(s) | 963, 1046, 1122, 1301 |
| DpnII | GATC | 4 cut(s) | 961, 1044, 1120, 1299 |
| Eam1104I | CTCTTC | 4 cut(s) | 684, 949, 995, 1512 |
| EarI | CTCTTC | 4 cut(s) | 684, 949, 995, 1512 |
| Eco31I | GGTCTC | 1 cut(s) | 759 |
| Eco47I | GGWCC | 1 cut(s) | 1277 |
| Eco47III | AGCGCT | 1 cut(s) | 22 |
| Eco57I | CTGAAG | 1 cut(s) | 320 |
| EcoT22I | ATGCAT | 1 cut(s) | 1033 |
| Esp3I | CGTCTC | 1 cut(s) | 105 |
| FaeI | CATG | 9 cut(s) | 17, 137, 371, 518, 583, 656, 761, 1000, 1516 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 438, 470 |
| FaqI | GGGAC | 2 cut(s) | 695, 1252 |
| FatI | CATG | 9 cut(s) | 13, 133, 367, 514, 579, 652, 757, 996, 1512 |
| FauI | CCCGC | 1 cut(s) | 1662 |
| FauNDI | CATATG | 2 cut(s) | 507, 1285 |
| Fnu4HI | GCNGC | 7 cut(s) | 19, 47, 768, 1290, 1344, 1490, 1635 |
| FokI | GGATG | 3 cut(s) | 305, 1338, 1424 |
| Fsp4HI | GCNGC | 7 cut(s) | 19, 47, 768, 1290, 1344, 1490, 1635 |
| FspBI | CTAG | 2 cut(s) | 1374, 1674 |
| GlaI | GCGC | 2 cut(s) | 22, 1367 |
| GluI | GCNGC | 7 cut(s) | 19, 47, 768, 1290, 1344, 1490, 1635 |
| GsuI | CTGGAG | 1 cut(s) | 1211 |
| HaeII | RGCGCY | 1 cut(s) | 24 |
| HapII | CCGG | 1 cut(s) | 308 |
| HhaI | GCGC | 2 cut(s) | 23, 1368 |
| Hin1II | CATG | 9 cut(s) | 17, 137, 371, 518, 583, 656, 761, 1000, 1516 |
| Hin6I | GCGC | 2 cut(s) | 21, 1366 |
| HinP1I | GCGC | 2 cut(s) | 21, 1366 |
| HinfI | GANTC | 2 cut(s) | 475, 1520 |
| HpaII | CCGG | 1 cut(s) | 308 |
| HphI | GGTGA | 4 cut(s) | 68, 222, 455, 878 |
| Hpy166II | GTNNAC | 2 cut(s) | 1280, 1472 |
| Hpy188I | TCNGA | 7 cut(s) | 156, 339, 480, 671, 723, 966, 1441 |
| Hpy188III | TCNNGA | 8 cut(s) | 170, 191, 374, 849, 914, 941, 1019, 1374 |
| Hpy8I | GTNNAC | 2 cut(s) | 1280, 1472 |
| Hpy99I | CGWCG | 1 cut(s) | 100 |
| HpyAV | CCTTC | 4 cut(s) | 89, 340, 787, 793 |
| HpyCH4III | ACNGT | 2 cut(s) | 115, 616 |
| HpyCH4IV | ACGT | 1 cut(s) | 594 |
| HpyCH4V | TGCA | 9 cut(s) | 565, 736, 770, 923, 977, 1031, 1040, 1420, 1479 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 27, 500, 896, 1002, 1037, 1554, 1643, 1652 |
| HpyF3I | CTNAG | 3 cut(s) | 714, 1553, 1568 |
| HpySE526I | ACGT | 1 cut(s) | 594 |
| Hsp92II | CATG | 9 cut(s) | 17, 137, 371, 518, 583, 656, 761, 1000, 1516 |
| HspAI | GCGC | 2 cut(s) | 21, 1366 |
| Kzo9I | GATC | 4 cut(s) | 961, 1044, 1120, 1299 |
| LguI | GCTCTTC | 2 cut(s) | 949, 995 |
| LmnI | GCTCC | 2 cut(s) | 585, 805 |
| Lsp1109I | GCAGC | 7 cut(s) | 30, 33, 754, 1276, 1330, 1501, 1621 |
| LweI | GCATC | 4 cut(s) | 490, 552, 964, 1407 |
| MaeI | CTAG | 2 cut(s) | 1374, 1674 |
| MaeII | ACGT | 1 cut(s) | 594 |
| MaeIII | GTNAC | 4 cut(s) | 115, 575, 932, 1571 |
| MalI | GATC | 4 cut(s) | 963, 1046, 1122, 1301 |
| MboI | GATC | 4 cut(s) | 961, 1044, 1120, 1299 |
| MboII | GAAGA | 9 cut(s) | 156, 179, 326, 552, 701, 966, 1012, 1529, 1636 |
| MfeI | CAATTG | 1 cut(s) | 466 |
| MlyI | GAGTC | 1 cut(s) | 1529 |
| MmeI | TCCRAC | 2 cut(s) | 681, 1303 |
| Mph1103I | ATGCAT | 1 cut(s) | 1033 |
| MseI | TTAA | 7 cut(s) | 552, 783, 810, 1086, 1164, 1211, 1629 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1253, 1425 |
| MspA1I | CMGCKG | 1 cut(s) | 751 |
| MspI | CCGG | 1 cut(s) | 308 |
| MunI | CAATTG | 1 cut(s) | 466 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 27, 500, 896, 1002, 1037, 1554, 1643, 1652 |
| NdeI | CATATG | 2 cut(s) | 507, 1285 |
| NdeII | GATC | 4 cut(s) | 961, 1044, 1120, 1299 |
| NlaIII | CATG | 9 cut(s) | 17, 137, 371, 518, 583, 656, 761, 1000, 1516 |
| NlaIV | GGNNCC | 2 cut(s) | 587, 1260 |
| NmuCI | GTSAC | 2 cut(s) | 575, 932 |
| NsiI | ATGCAT | 1 cut(s) | 1033 |
| NspI | RCATGY | 2 cut(s) | 371, 656 |
| NspV | TTCGAA | 2 cut(s) | 200, 260 |
| OliI | CACNNNNGTG | 1 cut(s) | 1425 |
| PaeI | GCATGC | 1 cut(s) | 371 |
| PciI | ACATGT | 1 cut(s) | 652 |
| PciSI | GCTCTTC | 2 cut(s) | 949, 995 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 600 |
| PfeI | GAWTC | 1 cut(s) | 475 |
| PflFI | GACNNNGTC | 1 cut(s) | 616 |
| PkrI | GCNGC | 7 cut(s) | 20, 48, 769, 1291, 1345, 1491, 1636 |
| PleI | GAGTC | 1 cut(s) | 1528 |
| PpsI | GAGTC | 1 cut(s) | 1528 |
| PscI | ACATGT | 1 cut(s) | 652 |
| PsiI | TTATAA | 3 cut(s) | 572, 1350, 1611 |
| PspN4I | GGNNCC | 2 cut(s) | 587, 1260 |
| PspPI | GGNCC | 1 cut(s) | 1277 |
| PstI | CTGCAG | 1 cut(s) | 738 |
| PstNI | CAGNNNCTG | 1 cut(s) | 742 |
| PsyI | GACNNNGTC | 1 cut(s) | 616 |
| RsaI | GTAC | 5 cut(s) | 62, 712, 1091, 1188, 1506 |
| RsaNI | GTAC | 5 cut(s) | 61, 711, 1090, 1187, 1505 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1253, 1425 |
| SapI | GCTCTTC | 2 cut(s) | 949, 995 |
| SaqAI | TTAA | 7 cut(s) | 552, 783, 810, 1086, 1164, 1211, 1629 |
| SatI | GCNGC | 7 cut(s) | 19, 47, 768, 1290, 1344, 1490, 1635 |
| Sau3AI | GATC | 4 cut(s) | 961, 1044, 1120, 1299 |
| Sau96I | GGNCC | 1 cut(s) | 1277 |
| ScaI | AGTACT | 1 cut(s) | 1091 |
| SchI | GAGTC | 1 cut(s) | 1529 |
| SfaNI | GCATC | 4 cut(s) | 490, 552, 964, 1407 |
| SfcI | CTRYAG | 2 cut(s) | 734, 1558 |
| SfuI | TTCGAA | 2 cut(s) | 200, 260 |
| SinI | GGWCC | 1 cut(s) | 1277 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1253, 1425 |
| SmlI | CTYRAG | 2 cut(s) | 414, 941 |
| SmoI | CTYRAG | 2 cut(s) | 414, 941 |
| SphI | GCATGC | 1 cut(s) | 371 |
| SsiI | CCGC | 3 cut(s) | 708, 751, 1669 |
| SspI | AATATT | 1 cut(s) | 1072 |
| SspMI | CTAG | 2 cut(s) | 1374, 1674 |
| TaaI | ACNGT | 2 cut(s) | 115, 616 |
| TaiI | ACGT | 1 cut(s) | 597 |
| TaqI | TCGA | 8 cut(s) | 200, 260, 603, 620, 659, 848, 1106, 1216 |
| TatI | WGTACW | 3 cut(s) | 1089, 1186, 1504 |
| TfiI | GAWTC | 1 cut(s) | 475 |
| Tru1I | TTAA | 7 cut(s) | 552, 783, 810, 1086, 1164, 1211, 1629 |
| Tru9I | TTAA | 7 cut(s) | 552, 783, 810, 1086, 1164, 1211, 1629 |
| TscAI | CASTG | 4 cut(s) | 75, 743, 795, 1474 |
| TseFI | GTSAC | 2 cut(s) | 575, 932 |
| TseI | GCWGC | 7 cut(s) | 18, 46, 767, 1289, 1343, 1489, 1634 |
| Tsp45I | GTSAC | 2 cut(s) | 575, 932 |
| TspDTI | ATGAA | 5 cut(s) | 71, 150, 765, 1013, 1092 |
| TspRI | CASTG | 4 cut(s) | 75, 743, 795, 1474 |
| Tth111I | GACNNNGTC | 1 cut(s) | 616 |
| VpaK11BI | GGWCC | 1 cut(s) | 1277 |
| XapI | RAATTY | 3 cut(s) | 146, 225, 1662 |
| XbaI | TCTAGA | 1 cut(s) | 1373 |
| XceI | RCATGY | 2 cut(s) | 371, 656 |
| XspI | CTAG | 2 cut(s) | 1374, 1674 |
| ZrmI | AGTACT | 1 cut(s) | 1091 |
| Zsp2I | ATGCAT | 1 cut(s) | 1033 |