FvH4_5g25350

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
16883592 .. 16888038
4447 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g25350.t1

Sequence Viewer

Length: 1692 bp
ATGATGGTGTTTCATGGCAGCGCTTCACGCCATCTCTTATCATTGCTGCCATCTTTTAGGTACTATCCACTGCTTCACCTTCATTCTCCAATCTCGTCGTCTCTCTTTTCAACTGTTACTGCTCAATCCCAACATGAATACATCAAATTCAATCCGAACCAGTCTTCTCTTGACGAACGCTCTGTTCTTCACGAGCTTTCGAACCTCTTACCAATTCCCCACCAAATTTCACCTCCAAAACAATTTGAACCTACTAATTCGAATAAGCAGGTAGAAAATGTTAGGGCTGTGGATGGGTTTTTGTTGCCGGAGGAGAAATTGCGTGGGGTGTTTCTTCAGAAATTGAAGGGTATAGCTGTAATTGAGCATGCTCTGGACAATGCTGGTGTTGATTTGAGTGTTGATGTTGTTGCTCAAGTAGTGAATAGAGGTAGTTTAGGAGGTGAAGCAATGCTTGTGTTTTTCAATTGGGCGATTCAGAAGCCGAATGTAGCTAAAGATGCTCATATGTATCATGTAATCATCAAAGCATTGGGTAGAAGAAAGTTCTTTAAGTATATGATGCAAGTTATAAGTGACATGAGGAGCCAAGACGTATGTATCGATTTGGAGACTGTGTCGATAGTGATGGATAGTTTTGTGAGGGCTGGACATGTATCGAAAGCAATCCGATTTTTTTGGGACTTGGAAGAGTTCGGGTTGGATTGCGGTACTGAGTGTCTGAATGTGCTTCTGCAGTGTCTGTGTCAGCGGTCTCATGTAGTGGCTGCAAGTTCATTTCTTAATTCAGTGAAGGGGAAGGTGGAGCTTAATGGTGCGATGTATAACATAGTTATTGGTGGGTGGTCGAGATATGGTAGAGTTGGTGAGATGGAGAGGACTTTGGAAGCAATGGTAGCAGATGGGTTTAGTCCTGATAGTGCAACTTTCTGTCACATTCTTGAGGGTTTAGGAAGAGCTGATCGGATTGATGATGCAGTTGAGATTTTTGAGAGCATGAAGAGCAAAGGTTGTGTTCCAGACACCAATGCATACAATGCAATGATCTCTAATTTTATCTCTGTTGGGAATATTGATGAATGTGTTAAGTACTTCAAAAGTATGTCGAGTAATGGTTGTGATCCAAATGTTGAAACTTATACCAAATTGATTGCTGGTTTGCTTAAAGCCCGAAAAGTGGCAGATGTACTGGAGATGTTTGATGAGATGTTAAGTCGAGGATTTGTTCCTACTATGGGGACTATAACCACTTTTATGGAACCCTTATGTAGCTATGGTCCACCATATGCTGCTATGATGATCTACCAGAAAGCAAGAAAGGTTGGATGTAGAGTTTCGTTGGCTGCTTATAAGCTATTGCTTATGCGCCTTTCTAGATTTGGTAAATGTGGAATGTTGCTAAACATTTGGGATGAGATGCACGAATGTGGTTATGCTTCTGATATTGAAGTTTATGAGCTTGTAATCAGTGGACTTTGCAACATAGGGCAGCTTGAAAATGCTGTACTTGTCATGGAAGAGTCTCTGCGAAAAGGTTTTTGCCCAAGCAGGCTTAGCTACAGCAAACTAAGTAACAAACTTCTTGCTTCAAATAAGTTAGAGAGGGCTTATAAGTTATATTTGAAGATTAAAGCTGCTCGCCGTGCTGACAAGGCACAGAGAATTTGGCGGGCTAGGGGATGGCATTTATGA

Protein Analysis

564

Amino Acids

63.18

Weight (kDa)

8.49

Isoelectric Point (pI)

37.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_24 PF23276 240 - 368 5.5e-07 Fungal tetratrico peptide repeats
PPR_2 PF13041 274 - 318 6.9e-06 PPR repeat family
PPR_3 PF13812 295 - 351 8.2e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 301 - 334 5.7e-06 PPR repeat
PPR_2 PF13041 309 - 350 1.6e-08 PPR repeat family
PPR_long PF17177 321 - 413 4.3e-07 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 340 - 389 4.9e-12 PPR repeat family
PPR_2 PF13041 378 - 423 3.9e-08 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 572, 1350, 1611
Acc36I ACCTGC 1 cut(s) 259
AciI CCGC 3 cut(s) 708, 751, 1669
AclWI GGATC 1 cut(s) 1115
AcsI RAATTY 3 cut(s) 146, 225, 1662
AcuI CTGAAG 1 cut(s) 320
AfaI GTAC 5 cut(s) 62, 712, 1091, 1188, 1506
AfeI AGCGCT 1 cut(s) 22
AfiI CCNNNNNNNGG 2 cut(s) 1177, 1235
AflIII ACRYGT 1 cut(s) 652
AleI CACNNNNGTG 1 cut(s) 1425
Alw26I GTCTC 4 cut(s) 105, 605, 759, 1527
AlwI GGATC 1 cut(s) 1115
AlwNI CAGNNNCTG 1 cut(s) 742
Aor51HI AGCGCT 1 cut(s) 22
ApeKI GCWGC 7 cut(s) 18, 46, 767, 1289, 1343, 1489, 1634
ApoI RAATTY 3 cut(s) 146, 225, 1662
AspLEI GCGC 2 cut(s) 23, 1368
AspS9I GGNCC 1 cut(s) 1277
AsuHPI GGTGA 4 cut(s) 68, 222, 455, 878
AsuII TTCGAA 2 cut(s) 200, 260
AvaII GGWCC 1 cut(s) 1277
BaeI ACNNNNGTAYC 2 cut(s) 583, 616
BauI CACGAG 1 cut(s) 191
BbsI GAAGAC 1 cut(s) 156
BbvI GCAGC 7 cut(s) 30, 33, 754, 1276, 1330, 1501, 1621
BccI CCATC 7 cut(s) 39, 58, 287, 622, 865, 896, 1674
BceAI ACGGC 1 cut(s) 1626
BcoDI GTCTC 4 cut(s) 105, 605, 759, 1527
BfaI CTAG 2 cut(s) 1374, 1674
BfmI CTRYAG 2 cut(s) 734, 1558
BfoI RGCGCY 1 cut(s) 24
BfuAI ACCTGC 1 cut(s) 259
BisI GCNGC 7 cut(s) 19, 47, 768, 1290, 1344, 1490, 1635
BlpI GCTNAGC 1 cut(s) 1553
BlsI GCNGC 7 cut(s) 20, 48, 769, 1291, 1345, 1491, 1636
BmcAI AGTACT 1 cut(s) 1091
Bme18I GGWCC 1 cut(s) 1277
BmgT120I GGNCC 1 cut(s) 1277
BmiI GGNNCC 2 cut(s) 587, 1260
BmsI GCATC 4 cut(s) 490, 552, 964, 1407
BpiI GAAGAC 1 cut(s) 156
BpmI CTGGAG 1 cut(s) 1211
Bpu1102I GCTNAGC 1 cut(s) 1553
Bpu14I TTCGAA 2 cut(s) 200, 260
BpuEI CTTGAG 2 cut(s) 399, 962
Bsa29I ATCGAT 1 cut(s) 603
BsaI GGTCTC 1 cut(s) 759
BsaXI ACNNNNNCTCC 2 cut(s) 602, 632
Bsc4I CCNNNNNNNGG 2 cut(s) 1177, 1235
Bse1I ACTGG 2 cut(s) 160, 1194
Bse3DI GCAATG 4 cut(s) 41, 456, 897, 1047
BseCI ATCGAT 1 cut(s) 603
BseGI GGATG 4 cut(s) 298, 1331, 1417, 1685
BseLI CCNNNNNNNGG 2 cut(s) 1177, 1235
BseMI GCAATG 4 cut(s) 41, 456, 897, 1047
BseMII CTCAG 1 cut(s) 705
BseNI ACTGG 2 cut(s) 160, 1194
BseRI GAGGAG 2 cut(s) 326, 598
BseXI GCAGC 7 cut(s) 30, 33, 754, 1276, 1330, 1501, 1621
BshVI ATCGAT 1 cut(s) 603
BsiSI CCGG 1 cut(s) 308
BslFI GGGAC 2 cut(s) 695, 1252
BslI CCNNNNNNNGG 2 cut(s) 1177, 1235
BsmAI GTCTC 4 cut(s) 105, 605, 759, 1527
BsmBI CGTCTC 1 cut(s) 105
BsmFI GGGAC 2 cut(s) 695, 1252
Bso31I GGTCTC 1 cut(s) 759
Bsp119I TTCGAA 2 cut(s) 200, 260
Bsp143I GATC 4 cut(s) 961, 1044, 1120, 1299
Bsp1720I GCTNAGC 1 cut(s) 1553
BspACI CCGC 3 cut(s) 708, 751, 1669
BspCNI CTCAG 1 cut(s) 706
BspDI ATCGAT 1 cut(s) 603
BspLI GGNNCC 2 cut(s) 587, 1260
BspMAI CTGCAG 1 cut(s) 738
BspMI ACCTGC 1 cut(s) 259
BspPI GGATC 1 cut(s) 1115
BspQI GCTCTTC 2 cut(s) 949, 995
BspT104I TTCGAA 2 cut(s) 200, 260
BspTNI GGTCTC 1 cut(s) 759
BsrDI GCAATG 4 cut(s) 41, 456, 897, 1047
BsrI ACTGG 2 cut(s) 160, 1194
BssMI GATC 4 cut(s) 961, 1044, 1120, 1299
BssSI CACGAG 1 cut(s) 191
Bst2BI CACGAG 1 cut(s) 191
Bst4CI ACNGT 2 cut(s) 115, 616
Bst6I CTCTTC 4 cut(s) 684, 949, 995, 1512
BstAPI GCANNNNNTGC 1 cut(s) 1037
BstBI TTCGAA 2 cut(s) 200, 260
BstC8I GCNNGC 4 cut(s) 369, 1550, 1639, 1671
BstDEI CTNAG 3 cut(s) 714, 1553, 1568
BstF5I GGATG 4 cut(s) 298, 1331, 1417, 1685
BstH2I RGCGCY 1 cut(s) 24
BstHHI GCGC 2 cut(s) 23, 1368
BstKTI GATC 4 cut(s) 964, 1047, 1123, 1302
BstMAI GTCTC 4 cut(s) 105, 605, 759, 1527
BstMBI GATC 4 cut(s) 961, 1044, 1120, 1299
BstMWI GCNNNNNNNGC 8 cut(s) 27, 500, 896, 1002, 1037, 1554, 1643, 1652
BstNSI RCATGY 2 cut(s) 371, 656
BstSFI CTRYAG 2 cut(s) 734, 1558
BstV1I GCAGC 7 cut(s) 30, 33, 754, 1276, 1330, 1501, 1621
BstV2I GAAGAC 1 cut(s) 156
BstXI CCANNNNNNTGG 1 cut(s) 1255
Bsu15I ATCGAT 1 cut(s) 603
BsuTUI ATCGAT 1 cut(s) 603
BtgZI GCGATG 1 cut(s) 833
BtsCI GGATG 4 cut(s) 298, 1331, 1417, 1685
BtsI GCAGTG 2 cut(s) 68, 743
BtsIMutI CAGTG 4 cut(s) 68, 743, 795, 1474
BveI ACCTGC 1 cut(s) 259
Cac8I GCNNGC 4 cut(s) 369, 1550, 1639, 1671
CaiI CAGNNNCTG 1 cut(s) 742
CfoI GCGC 2 cut(s) 23, 1368
Cfr13I GGNCC 1 cut(s) 1277
ClaI ATCGAT 1 cut(s) 603
Csp6I GTAC 5 cut(s) 61, 711, 1090, 1187, 1505
CviAII CATG 9 cut(s) 14, 134, 368, 515, 580, 653, 758, 997, 1513
CviQI GTAC 5 cut(s) 61, 711, 1090, 1187, 1505
DdeI CTNAG 3 cut(s) 714, 1553, 1568
DpnI GATC 4 cut(s) 963, 1046, 1122, 1301
DpnII GATC 4 cut(s) 961, 1044, 1120, 1299
Eam1104I CTCTTC 4 cut(s) 684, 949, 995, 1512
EarI CTCTTC 4 cut(s) 684, 949, 995, 1512
Eco31I GGTCTC 1 cut(s) 759
Eco47I GGWCC 1 cut(s) 1277
Eco47III AGCGCT 1 cut(s) 22
Eco57I CTGAAG 1 cut(s) 320
EcoT22I ATGCAT 1 cut(s) 1033
Esp3I CGTCTC 1 cut(s) 105
FaeI CATG 9 cut(s) 17, 137, 371, 518, 583, 656, 761, 1000, 1516
FalI AAGNNNNNCTT 2 cut(s) 438, 470
FaqI GGGAC 2 cut(s) 695, 1252
FatI CATG 9 cut(s) 13, 133, 367, 514, 579, 652, 757, 996, 1512
FauI CCCGC 1 cut(s) 1662
FauNDI CATATG 2 cut(s) 507, 1285
Fnu4HI GCNGC 7 cut(s) 19, 47, 768, 1290, 1344, 1490, 1635
FokI GGATG 3 cut(s) 305, 1338, 1424
Fsp4HI GCNGC 7 cut(s) 19, 47, 768, 1290, 1344, 1490, 1635
FspBI CTAG 2 cut(s) 1374, 1674
GlaI GCGC 2 cut(s) 22, 1367
GluI GCNGC 7 cut(s) 19, 47, 768, 1290, 1344, 1490, 1635
GsuI CTGGAG 1 cut(s) 1211
HaeII RGCGCY 1 cut(s) 24
HapII CCGG 1 cut(s) 308
HhaI GCGC 2 cut(s) 23, 1368
Hin1II CATG 9 cut(s) 17, 137, 371, 518, 583, 656, 761, 1000, 1516
Hin6I GCGC 2 cut(s) 21, 1366
HinP1I GCGC 2 cut(s) 21, 1366
HinfI GANTC 2 cut(s) 475, 1520
HpaII CCGG 1 cut(s) 308
HphI GGTGA 4 cut(s) 68, 222, 455, 878
Hpy166II GTNNAC 2 cut(s) 1280, 1472
Hpy188I TCNGA 7 cut(s) 156, 339, 480, 671, 723, 966, 1441
Hpy188III TCNNGA 8 cut(s) 170, 191, 374, 849, 914, 941, 1019, 1374
Hpy8I GTNNAC 2 cut(s) 1280, 1472
Hpy99I CGWCG 1 cut(s) 100
HpyAV CCTTC 4 cut(s) 89, 340, 787, 793
HpyCH4III ACNGT 2 cut(s) 115, 616
HpyCH4IV ACGT 1 cut(s) 594
HpyCH4V TGCA 9 cut(s) 565, 736, 770, 923, 977, 1031, 1040, 1420, 1479
HpyF10VI GCNNNNNNNGC 8 cut(s) 27, 500, 896, 1002, 1037, 1554, 1643, 1652
HpyF3I CTNAG 3 cut(s) 714, 1553, 1568
HpySE526I ACGT 1 cut(s) 594
Hsp92II CATG 9 cut(s) 17, 137, 371, 518, 583, 656, 761, 1000, 1516
HspAI GCGC 2 cut(s) 21, 1366
Kzo9I GATC 4 cut(s) 961, 1044, 1120, 1299
LguI GCTCTTC 2 cut(s) 949, 995
LmnI GCTCC 2 cut(s) 585, 805
Lsp1109I GCAGC 7 cut(s) 30, 33, 754, 1276, 1330, 1501, 1621
LweI GCATC 4 cut(s) 490, 552, 964, 1407
MaeI CTAG 2 cut(s) 1374, 1674
MaeII ACGT 1 cut(s) 594
MaeIII GTNAC 4 cut(s) 115, 575, 932, 1571
MalI GATC 4 cut(s) 963, 1046, 1122, 1301
MboI GATC 4 cut(s) 961, 1044, 1120, 1299
MboII GAAGA 9 cut(s) 156, 179, 326, 552, 701, 966, 1012, 1529, 1636
MfeI CAATTG 1 cut(s) 466
MlyI GAGTC 1 cut(s) 1529
MmeI TCCRAC 2 cut(s) 681, 1303
Mph1103I ATGCAT 1 cut(s) 1033
MseI TTAA 7 cut(s) 552, 783, 810, 1086, 1164, 1211, 1629
MslI CAYNNNNRTG 2 cut(s) 1253, 1425
MspA1I CMGCKG 1 cut(s) 751
MspI CCGG 1 cut(s) 308
MunI CAATTG 1 cut(s) 466
MwoI GCNNNNNNNGC 8 cut(s) 27, 500, 896, 1002, 1037, 1554, 1643, 1652
NdeI CATATG 2 cut(s) 507, 1285
NdeII GATC 4 cut(s) 961, 1044, 1120, 1299
NlaIII CATG 9 cut(s) 17, 137, 371, 518, 583, 656, 761, 1000, 1516
NlaIV GGNNCC 2 cut(s) 587, 1260
NmuCI GTSAC 2 cut(s) 575, 932
NsiI ATGCAT 1 cut(s) 1033
NspI RCATGY 2 cut(s) 371, 656
NspV TTCGAA 2 cut(s) 200, 260
OliI CACNNNNGTG 1 cut(s) 1425
PaeI GCATGC 1 cut(s) 371
PciI ACATGT 1 cut(s) 652
PciSI GCTCTTC 2 cut(s) 949, 995
PcsI WCGNNNNNNNCGW 1 cut(s) 600
PfeI GAWTC 1 cut(s) 475
PflFI GACNNNGTC 1 cut(s) 616
PkrI GCNGC 7 cut(s) 20, 48, 769, 1291, 1345, 1491, 1636
PleI GAGTC 1 cut(s) 1528
PpsI GAGTC 1 cut(s) 1528
PscI ACATGT 1 cut(s) 652
PsiI TTATAA 3 cut(s) 572, 1350, 1611
PspN4I GGNNCC 2 cut(s) 587, 1260
PspPI GGNCC 1 cut(s) 1277
PstI CTGCAG 1 cut(s) 738
PstNI CAGNNNCTG 1 cut(s) 742
PsyI GACNNNGTC 1 cut(s) 616
RsaI GTAC 5 cut(s) 62, 712, 1091, 1188, 1506
RsaNI GTAC 5 cut(s) 61, 711, 1090, 1187, 1505
RseI CAYNNNNRTG 2 cut(s) 1253, 1425
SapI GCTCTTC 2 cut(s) 949, 995
SaqAI TTAA 7 cut(s) 552, 783, 810, 1086, 1164, 1211, 1629
SatI GCNGC 7 cut(s) 19, 47, 768, 1290, 1344, 1490, 1635
Sau3AI GATC 4 cut(s) 961, 1044, 1120, 1299
Sau96I GGNCC 1 cut(s) 1277
ScaI AGTACT 1 cut(s) 1091
SchI GAGTC 1 cut(s) 1529
SfaNI GCATC 4 cut(s) 490, 552, 964, 1407
SfcI CTRYAG 2 cut(s) 734, 1558
SfuI TTCGAA 2 cut(s) 200, 260
SinI GGWCC 1 cut(s) 1277
SmiMI CAYNNNNRTG 2 cut(s) 1253, 1425
SmlI CTYRAG 2 cut(s) 414, 941
SmoI CTYRAG 2 cut(s) 414, 941
SphI GCATGC 1 cut(s) 371
SsiI CCGC 3 cut(s) 708, 751, 1669
SspI AATATT 1 cut(s) 1072
SspMI CTAG 2 cut(s) 1374, 1674
TaaI ACNGT 2 cut(s) 115, 616
TaiI ACGT 1 cut(s) 597
TaqI TCGA 8 cut(s) 200, 260, 603, 620, 659, 848, 1106, 1216
TatI WGTACW 3 cut(s) 1089, 1186, 1504
TfiI GAWTC 1 cut(s) 475
Tru1I TTAA 7 cut(s) 552, 783, 810, 1086, 1164, 1211, 1629
Tru9I TTAA 7 cut(s) 552, 783, 810, 1086, 1164, 1211, 1629
TscAI CASTG 4 cut(s) 75, 743, 795, 1474
TseFI GTSAC 2 cut(s) 575, 932
TseI GCWGC 7 cut(s) 18, 46, 767, 1289, 1343, 1489, 1634
Tsp45I GTSAC 2 cut(s) 575, 932
TspDTI ATGAA 5 cut(s) 71, 150, 765, 1013, 1092
TspRI CASTG 4 cut(s) 75, 743, 795, 1474
Tth111I GACNNNGTC 1 cut(s) 616
VpaK11BI GGWCC 1 cut(s) 1277
XapI RAATTY 3 cut(s) 146, 225, 1662
XbaI TCTAGA 1 cut(s) 1373
XceI RCATGY 2 cut(s) 371, 656
XspI CTAG 2 cut(s) 1374, 1674
ZrmI AGTACT 1 cut(s) 1091
Zsp2I ATGCAT 1 cut(s) 1033
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.