Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001315

Physical Location & Seq

Genomic Coordinates Forward (+)

12550974 .. 12555250

Gene Structure 4277 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0157900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGCTGCCAAGGAATCAAGCTCTGCTGCTTCAACAGATTCTAAAATCAAAAGGGTGCTCACGCATAATGGTAGATATGCGCAGTACAATGTGTTTGGGAACTTGTTTGAGGTCTCTAGCAAGTATGTCCCGCCAATTAGGCCAATTGGAAGAGGTGCTTATGGCATTGTCTGTGCTGCTGTTAATTCAGACACACATGAGGAAGTTGCCATTAAGAAGATCGGTAATGCTTTTGACAACATAATAGATGCCAAGAGGACGTTAAGAGAAATCAAGCTTCTTCGCCATATGAACCATGAAAATGTTATTGGCCTCAAGGACATCGTACGACCGCCCAAAAAAGACAACTTCAATGATGTATACATTGTTTATGAATTAATGGACACTGATCTTCATCAGATCATTCGTTCTGACCAACAACTAACTGATGATCATTGTCAGTACTTTCTGTATCAGCTGTTAAGAGGACTAAAATATATTCACTCTGCCAATGTGTTGCACCGGGATCTGAAGCCAAGTAATCTGCTTCTTAATGCTAATTGTGACCTTAAAATTGGAGATTTTGGACTAGCCAGAACAACATCCGAGACGGATTTCATGACTGAATATGTTGTCACTCGTTGGTACCGAGCACCAGAGTTGCTTCTTAATTGTTCAGAGTACACTGCTGCAATTGATATATGGTCTGTTGGTTGCATACTCGGTGAAATCATAACCAGAGAACCTTTGTTTCCTGGGAAGGATTACGTTCATCAGCTGAGGCTTATCACCGAGTTAATAGGTTCACCTGATGATGCGAGCCTTGGATTTCTTCGAAGTGATAATACCCGCAGATATGTAAAACAGCTCCCGCAATTCCGGAGGCAACAGTTCTCTGCTAGATTCCCTAATATGTCTCCTGGGGCTTTGGATTTGCTAGAGAAAATGCTCGTCTTTGATCCCACCAGACGCATTACTGTTGACGAGGCACTTTGTCACCCATACTTGTCGTCCCTTCACGACAACAATGATGAGCCTGTTTGCCCCAGGCCTTTCCATTTTGATTTTGAGCAACCATCATGCACTGAAGAGCACATCAAAGAGCTCATCTGGAGGGAAGCAGTGAAGTATAATCCAGAGCCAACTCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

376

Amino Acids

43.26

Weight (kDa)

6.28

Isoelectric Point (pI)

45.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	47 - 329	5.7e-69	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	47 - 240	1.5e-32	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43820
fragaria_vesca	FvH4_5g24880 FvH4_5g25350 FvH4_5g25520
malus_domestica	MD16G1284000.v1.1
prunus_persica	Prupe.5G009500_v2.0.a1
pyrus_communis	pycom16g26010
rosa_chinensis	RchiOBHm_Chr6g0271861 RchiOBHm_Chr6g0271871 RchiOBHm_Chr6g0271981 RchiOBHm_Chr7g0215761 RchiOBHm_Chr7g0215771 RchiOBHm_Chr7g0215901 RchiOBHm_Chr7g0217231 RchiOBHm_Chr7g0219831
rosa_laevigata	RLG00000002611 RLG00000002625 RLG00000013566
rosa_multiflora	Rmu_sc0000055.1_g000008 Rmu_sc0000055.1_g000009 Rmu_sc0000516.1_g000005 Rmu_sc0000516.1_g000006 Rmu_sc0004379.1_g000016 Rmu_sc0006240.1_g000009 Rmu_sc0007857.1_g000006 Rmu_sc0016364.1_g000002 Rmu_sc0016407.1_g000001 Rmu_sc0023052.1_g000001
rosa_roxburghii	Rroxscaffold_2G00114980 Rroxscaffold_3G00243850 Rroxscaffold_5G00342010 Rroxscaffold_7G00186190
rosa_rugosa	Rorug06G0064100 Rorug07G0156600 Rorug07G0157900 Rorug07G0158000
rosa_samantha	Rh1BG116200 Rh6AG181800 Rh6BG185400 Rh6CG182900 Rh6CG183200 Rh6DG174300 Rh6DG174600 Rh7AG294600 Rh7AG306400 Rh7AG306500 Rh7BG286400 Rh7CG314600 Rh7CG325500 Rh7DG296900 Rh7DG299400 Rh7DG306200
rosa_wichuraiana	Rw6G015640 Rw7G026030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	81
Acc65I	GGTACC	1 cut(s)	624
AccB1I	GGYRCC	1 cut(s)	624
AccI	GTMKAC	1 cut(s)	360
AccIII	TCCGGA	1 cut(s)	858
AciI	CCGC	4 cut(s)	131, 332, 829, 851
AclWI	GGATC	2 cut(s)	513, 932
AcuI	CTGAAG	2 cut(s)	530, 1086
AfaI	GTAC	5 cut(s)	86, 327, 443, 626, 662
AgsI	TTSAA	2 cut(s)	33, 352
AjnI	CCWGG	3 cut(s)	733, 898, 1025
AjuI	GAANNNNNNNTTGG	2 cut(s)	291, 323
AluBI	AGCT	6 cut(s)	21, 277, 457, 757, 847, 1084
AluI	AGCT	6 cut(s)	21, 277, 457, 757, 847, 1084
Alw21I	GWGCWC	4 cut(s)	60, 634, 1074, 1086
Alw26I	GTCTC	3 cut(s)	118, 581, 900
AlwI	GGATC	2 cut(s)	513, 932
Aor13HI	TCCGGA	1 cut(s)	858
AoxI	GGCC	3 cut(s)	140, 310, 1028
ApeKI	GCWGC	4 cut(s)	5, 26, 176, 668
AseI	ATTAAT	1 cut(s)	377
Asp718I	GGTACC	1 cut(s)	624
AspLEI	GCGC	1 cut(s)	82
AsuC2I	CCSGG	1 cut(s)	503
AsuHPI	GGTGA	4 cut(s)	716, 760, 777, 968
AsuII	TTCGAA	1 cut(s)	814
BanI	GGYRCC	1 cut(s)	624
BanII	GRGCYC	1 cut(s)	1086
BarI	GAAGNNNNNNTAC	2 cut(s)	808, 840
Bbv12I	GWGCWC	4 cut(s)	60, 634, 1074, 1086
BbvCI	CCTCAGC	1 cut(s)	758
BbvI	GCAGC	3 cut(s)	13, 163, 655
BccI	CCATC	1 cut(s)	1063
BciT130I	CCWGG	3 cut(s)	735, 900, 1027
BclI	TGATCA	1 cut(s)	430
BcnI	CCSGG	1 cut(s)	503
BcoDI	GTCTC	3 cut(s)	118, 581, 900
BfaI	CTAG	4 cut(s)	117, 569, 879, 917
BglI	GCCNNNNNGGC	1 cut(s)	139
BisI	GCNGC	4 cut(s)	6, 27, 177, 669
BlsI	GCNGC	4 cut(s)	7, 28, 178, 670
BmcAI	AGTACT	1 cut(s)	443
Bme1390I	CCNGG	4 cut(s)	503, 735, 900, 1027
BmiI	GGNNCC	1 cut(s)	626
BmrFI	CCNGG	4 cut(s)	503, 735, 900, 1027
BmsI	GCATC	2 cut(s)	238, 784
BpmI	CTGGAG	1 cut(s)	1111
Bpu10I	CCTNAGC	1 cut(s)	758
Bpu14I	TTCGAA	1 cut(s)	814
BpuEI	CTTGAG	1 cut(s)	299
BpuMI	CCSGG	1 cut(s)	503
BsaBI	GATNNNNATC	1 cut(s)	393
BsaI	GGTCTC	1 cut(s)	118
BsaJI	CCNNGG	5 cut(s)	9, 734, 802, 899, 1025
BsaWI	WCCGGW	1 cut(s)	858
Bse8I	GATNNNNATC	1 cut(s)	393
BseAI	TCCGGA	1 cut(s)	858
BseBI	CCWGG	3 cut(s)	735, 900, 1027
BseDI	CCNNGG	5 cut(s)	9, 734, 802, 899, 1025
BseGI	GGATG	1 cut(s)	581
BseJI	GATNNNNATC	1 cut(s)	393
BseMII	CTCAG	1 cut(s)	749
BseXI	GCAGC	3 cut(s)	13, 163, 655
Bsh1285I	CGRYCG	1 cut(s)	332
BshFI	GGCC	3 cut(s)	142, 312, 1030
BshNI	GGYRCC	1 cut(s)	624
BsiEI	CGRYCG	1 cut(s)	332
BsiHKAI	GWGCWC	4 cut(s)	60, 634, 1074, 1086
BsiSI	CCGG	2 cut(s)	502, 859
BsiWI	CGTACG	1 cut(s)	325
BslFI	GGGAC	2 cut(s)	113, 976
BsmAI	GTCTC	3 cut(s)	118, 581, 900
BsmBI	CGTCTC	1 cut(s)	581
BsmFI	GGGAC	2 cut(s)	113, 976
BsnI	GGCC	3 cut(s)	142, 312, 1030
Bso31I	GGTCTC	1 cut(s)	118
Bsp119I	TTCGAA	1 cut(s)	814
Bsp1286I	GDGCHC	4 cut(s)	60, 634, 1074, 1086
Bsp13I	TCCGGA	1 cut(s)	858
Bsp143I	GATC	6 cut(s)	219, 388, 399, 430, 505, 937
BspACI	CCGC	4 cut(s)	131, 332, 829, 851
BspANI	GGCC	3 cut(s)	142, 312, 1030
BspCNI	CTCAG	1 cut(s)	750
BspEI	TCCGGA	1 cut(s)	858
BspHI	TCATGA	1 cut(s)	597
BspLI	GGNNCC	1 cut(s)	626
BspPI	GGATC	2 cut(s)	513, 932
BspQI	GCTCTTC	1 cut(s)	1062
BspT104I	TTCGAA	1 cut(s)	814
BspT107I	GGYRCC	1 cut(s)	624
BspTNI	GGTCTC	1 cut(s)	118
BssECI	CCNNGG	5 cut(s)	9, 734, 802, 899, 1025
BssMI	GATC	6 cut(s)	219, 388, 399, 430, 505, 937
BssNAI	GTATAC	1 cut(s)	361
BssT1I	CCWWGG	2 cut(s)	9, 802
Bst1107I	GTATAC	1 cut(s)	361
Bst2UI	CCWGG	3 cut(s)	735, 900, 1027
Bst4CI	ACNGT	2 cut(s)	870, 958
Bst6I	CTCTTC	2 cut(s)	145, 1062
BstBI	TTCGAA	1 cut(s)	814
BstC8I	GCNNGC	1 cut(s)	799
BstDEI	CTNAG	1 cut(s)	758
BstF5I	GGATG	1 cut(s)	581
BstHHI	GCGC	1 cut(s)	82
BstKTI	GATC	6 cut(s)	222, 391, 402, 433, 508, 940
BstMAI	GTCTC	3 cut(s)	118, 581, 900
BstMBI	GATC	6 cut(s)	219, 388, 399, 430, 505, 937
BstMCI	CGRYCG	1 cut(s)	332
BstMWI	GCNNNNNNNGC	1 cut(s)	139
BstNI	CCWGG	3 cut(s)	735, 900, 1027
BstSCI	CCNGG	4 cut(s)	501, 733, 898, 1025
BstV1I	GCAGC	3 cut(s)	13, 163, 655
BstX2I	RGATCY	1 cut(s)	505
BstYI	RGATCY	1 cut(s)	505
BstZ17I	GTATAC	1 cut(s)	361
BsuRI	GGCC	3 cut(s)	142, 312, 1030
BtsCI	GGATG	1 cut(s)	581
BtsI	GCAGTG	2 cut(s)	663, 1107
BtsIMutI	CAGTG	4 cut(s)	384, 663, 1062, 1107
Cac8I	GCNNGC	1 cut(s)	799
CciI	TCATGA	1 cut(s)	597
CfoI	GCGC	1 cut(s)	82
CseI	GACGC	1 cut(s)	957
Csp6I	GTAC	5 cut(s)	85, 326, 442, 625, 661
CviAII	CATG	4 cut(s)	197, 296, 598, 1059
CviQI	GTAC	5 cut(s)	85, 326, 442, 625, 661
DdeI	CTNAG	1 cut(s)	758
DpnI	GATC	6 cut(s)	221, 390, 401, 432, 507, 939
DpnII	GATC	6 cut(s)	219, 388, 399, 430, 505, 937
Eam1104I	CTCTTC	2 cut(s)	145, 1062
EarI	CTCTTC	2 cut(s)	145, 1062
Ecl136II	GAGCTC	1 cut(s)	1084
Eco130I	CCWWGG	2 cut(s)	9, 802
Eco147I	AGGCCT	1 cut(s)	1030
Eco24I	GRGCYC	1 cut(s)	1086
Eco31I	GGTCTC	1 cut(s)	118
Eco53kI	GAGCTC	1 cut(s)	1084
Eco57I	CTGAAG	2 cut(s)	530, 1086
EcoICRI	GAGCTC	1 cut(s)	1084
EcoRII	CCWGG	3 cut(s)	733, 898, 1025
EcoT14I	CCWWGG	2 cut(s)	9, 802
EcoT38I	GRGCYC	1 cut(s)	1086
ErhI	CCWWGG	2 cut(s)	9, 802
Esp3I	CGTCTC	1 cut(s)	581
FaeI	CATG	4 cut(s)	200, 299, 601, 1062
FalI	AAGNNNNNCTT	2 cut(s)	142, 174
FaqI	GGGAC	2 cut(s)	113, 976
FatI	CATG	4 cut(s)	196, 295, 597, 1058
FauI	CCCGC	3 cut(s)	138, 836, 858
FauNDI	CATATG	1 cut(s)	288
FbaI	TGATCA	1 cut(s)	430
FblI	GTMKAC	1 cut(s)	360
Fnu4HI	GCNGC	4 cut(s)	6, 27, 177, 669
FokI	GGATG	1 cut(s)	568
FriOI	GRGCYC	1 cut(s)	1086
Fsp4HI	GCNGC	4 cut(s)	6, 27, 177, 669
FspBI	CTAG	4 cut(s)	117, 569, 879, 917
FspI	TGCGCA	1 cut(s)	81
GlaI	GCGC	1 cut(s)	81
GluI	GCNGC	4 cut(s)	6, 27, 177, 669
GsuI	CTGGAG	1 cut(s)	1111
HaeIII	GGCC	3 cut(s)	142, 312, 1030
HapII	CCGG	2 cut(s)	502, 859
HgaI	GACGC	1 cut(s)	957
HhaI	GCGC	1 cut(s)	82
Hin1II	CATG	4 cut(s)	200, 299, 601, 1062
Hin6I	GCGC	1 cut(s)	80
HinP1I	GCGC	1 cut(s)	80
HincII	GTYRAC	1 cut(s)	961
HindII	GTYRAC	1 cut(s)	961
HindIII	AAGCTT	1 cut(s)	275
HinfI	GANTC	3 cut(s)	14, 38, 882
HpaII	CCGG	2 cut(s)	502, 859
HphI	GGTGA	4 cut(s)	716, 760, 777, 968
Hpy166II	GTNNAC	4 cut(s)	361, 663, 785, 961
Hpy188I	TCNGA	6 cut(s)	190, 399, 412, 510, 586, 658
Hpy188III	TCNNGA	5 cut(s)	598, 859, 998, 1090, 1115
Hpy8I	GTNNAC	4 cut(s)	361, 663, 785, 961
HpyAV	CCTTC	2 cut(s)	733, 1004
HpyCH4III	ACNGT	2 cut(s)	870, 958
HpyCH4IV	ACGT	2 cut(s)	260, 747
HpyCH4V	TGCA	4 cut(s)	499, 671, 696, 1062
HpyF10VI	GCNNNNNNNGC	1 cut(s)	139
HpyF3I	CTNAG	1 cut(s)	758
HpySE526I	ACGT	2 cut(s)	260, 747
Hsp92II	CATG	4 cut(s)	200, 299, 601, 1062
HspAI	GCGC	1 cut(s)	80
Kpn2I	TCCGGA	1 cut(s)	858
KpnI	GGTACC	1 cut(s)	628
Ksp22I	TGATCA	1 cut(s)	430
Kzo9I	GATC	6 cut(s)	219, 388, 399, 430, 505, 937
LguI	GCTCTTC	1 cut(s)	1062
LmnI	GCTCC	1 cut(s)	852
Lsp1109I	GCAGC	3 cut(s)	13, 163, 655
LweI	GCATC	2 cut(s)	238, 784
MaeI	CTAG	4 cut(s)	117, 569, 879, 917
MaeII	ACGT	2 cut(s)	260, 747
MaeIII	GTNAC	3 cut(s)	542, 613, 974
MalI	GATC	6 cut(s)	221, 390, 401, 432, 507, 939
MboI	GATC	6 cut(s)	219, 388, 399, 430, 505, 937
MboII	GAAGA	6 cut(s)	162, 229, 272, 383, 803, 1079
MfeI	CAATTG	2 cut(s)	144, 672
MflI	RGATCY	1 cut(s)	505
MhlI	GDGCHC	4 cut(s)	60, 634, 1074, 1086
MluCI	AATT	9 cut(s)	135, 144, 184, 374, 538, 552, 649, 672, 854
MroI	TCCGGA	1 cut(s)	858
MslI	CAYNNNNRTG	1 cut(s)	300
MspA1I	CMGCKG	2 cut(s)	457, 757
MspI	CCGG	2 cut(s)	502, 859
MspR9I	CCNGG	4 cut(s)	503, 735, 900, 1027
MunI	CAATTG	2 cut(s)	144, 672
MvaI	CCWGG	3 cut(s)	735, 900, 1027
MwoI	GCNNNNNNNGC	1 cut(s)	139
NciI	CCSGG	1 cut(s)	503
NdeI	CATATG	1 cut(s)	288
NdeII	GATC	6 cut(s)	219, 388, 399, 430, 505, 937
NlaIII	CATG	4 cut(s)	200, 299, 601, 1062
NlaIV	GGNNCC	1 cut(s)	626
NmuCI	GTSAC	3 cut(s)	542, 613, 974
NsbI	TGCGCA	1 cut(s)	81
NspV	TTCGAA	1 cut(s)	814
PagI	TCATGA	1 cut(s)	597
PceI	AGGCCT	1 cut(s)	1030
PciSI	GCTCTTC	1 cut(s)	1062
PcsI	WCGNNNNNNNCGW	1 cut(s)	625
PfeI	GAWTC	3 cut(s)	14, 38, 882
Pfl23II	CGTACG	1 cut(s)	325
PkrI	GCNGC	4 cut(s)	7, 28, 178, 670
PshBI	ATTAAT	1 cut(s)	377
Psp124BI	GAGCTC	1 cut(s)	1086
Psp6I	CCWGG	3 cut(s)	733, 898, 1025
PspGI	CCWGG	3 cut(s)	733, 898, 1025
PspLI	CGTACG	1 cut(s)	325
PspN4I	GGNNCC	1 cut(s)	626
PsuI	RGATCY	1 cut(s)	505
PvuII	CAGCTG	2 cut(s)	457, 757
RsaI	GTAC	5 cut(s)	86, 327, 443, 626, 662
RsaNI	GTAC	5 cut(s)	85, 326, 442, 625, 661
RseI	CAYNNNNRTG	1 cut(s)	300
SacI	GAGCTC	1 cut(s)	1086
SapI	GCTCTTC	1 cut(s)	1062
SatI	GCNGC	4 cut(s)	6, 27, 177, 669
Sau3AI	GATC	6 cut(s)	219, 388, 399, 430, 505, 937
ScaI	AGTACT	1 cut(s)	443
ScrFI	CCNGG	4 cut(s)	503, 735, 900, 1027
SduI	GDGCHC	4 cut(s)	60, 634, 1074, 1086
SfaNI	GCATC	2 cut(s)	238, 784
SfuI	TTCGAA	1 cut(s)	814
SmiMI	CAYNNNNRTG	1 cut(s)	300
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
Sse9I	AATT	9 cut(s)	135, 144, 184, 374, 538, 552, 649, 672, 854
SseBI	AGGCCT	1 cut(s)	1030
SsiI	CCGC	4 cut(s)	131, 332, 829, 851
SspMI	CTAG	4 cut(s)	117, 569, 879, 917
SstI	GAGCTC	1 cut(s)	1086
StuI	AGGCCT	1 cut(s)	1030
StyD4I	CCNGG	4 cut(s)	501, 733, 898, 1025
StyI	CCWWGG	2 cut(s)	9, 802
TaaI	ACNGT	2 cut(s)	870, 958
TaiI	ACGT	2 cut(s)	263, 750
TaqI	TCGA	1 cut(s)	814
TasI	AATT	9 cut(s)	135, 144, 184, 374, 538, 552, 649, 672, 854
TatI	WGTACW	3 cut(s)	84, 441, 660
TfiI	GAWTC	3 cut(s)	14, 38, 882
TscAI	CASTG	4 cut(s)	391, 670, 1069, 1107
TseFI	GTSAC	3 cut(s)	542, 613, 974
TseI	GCWGC	4 cut(s)	5, 26, 176, 668
Tsp45I	GTSAC	3 cut(s)	542, 613, 974
TspDTI	ATGAA	6 cut(s)	305, 312, 383, 387, 586, 740
TspGWI	ACGGA	1 cut(s)	605
TspRI	CASTG	4 cut(s)	391, 670, 1069, 1107
VspI	ATTAAT	1 cut(s)	377
XmiI	GTMKAC	1 cut(s)	360
XspI	CTAG	4 cut(s)	117, 569, 879, 917
ZrmI	AGTACT	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.