Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016364.1

Orthogroup ID

OG0001315

Physical Location & Seq

Genomic Coordinates Reverse (-)

7938 .. 8909

Gene Structure 972 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016364.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

atgcccaacgagaaattacgtggggtttttcttcagaaattgaagggtatagctgtaattgagcatgcgctcgacaatgttggtgtggatttgagcgttgatgttgttgcacaagtagtgaatagaggttgtttaggcggtgaagcaatgcttgtgttttttaattgggcgattaagaagccaaatgtagctaagcatgttcatacataccatataatcctcaaagtattgggtagaagaaagttctttaattatatgatgcacgttttgaatgacatgaggagtcgagacatacgtctcgatttggagactgtgtcgattgtgatggatagttttgtgagggctggacatgtctcgaaagcaatacaagttatccgaaactcggcagagttcgggttggattgcgatactaagtgtgtgaatgtgcttctgcagtgtctgtgtcggcggtctcatgtagtggctacaaattcgtttcttaattcagtgaaggggaaagtgcgattcaatggcactacgtataacattgtaattggtgggtggtcaaaatatggtagagttggtgagatggtgaggactttggaagcaatggtagcagatgggtttagtcctgatagtgcaactttcagttacattcttgagggtctaggaagagctgatcggattgacgatgcagttgaaatttttgagagcatgaaagggaaaggttgcgtgccagacaccattacatacaatgcaatgatctctaactttatctctgttgcgaatattgatgaatgtgtaaactacttcaagagtatgtcgagtaatgcttgcgatccaaatgttgatacttataccaaattgattgctggtttccttaaagctcggaaagcggcggatgcactggagatgtttgatgagatgttaagtcgaggatttgttcctactacggggactataacctcttttatatatggaacccttatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

323

Amino Acids

35.85

Weight (kDa)

8.55

Isoelectric Point (pI)

28.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43820
fragaria_vesca	FvH4_5g24880 FvH4_5g25350 FvH4_5g25520
malus_domestica	MD16G1284000.v1.1
prunus_persica	Prupe.5G009500_v2.0.a1
pyrus_communis	pycom16g26010
rosa_chinensis	RchiOBHm_Chr6g0271861 RchiOBHm_Chr6g0271871 RchiOBHm_Chr6g0271981 RchiOBHm_Chr7g0215761 RchiOBHm_Chr7g0215771 RchiOBHm_Chr7g0215901 RchiOBHm_Chr7g0217231 RchiOBHm_Chr7g0219831
rosa_laevigata	RLG00000002611 RLG00000002625 RLG00000013566
rosa_multiflora	Rmu_sc0000055.1_g000008 Rmu_sc0000055.1_g000009 Rmu_sc0000516.1_g000005 Rmu_sc0000516.1_g000006 Rmu_sc0004379.1_g000016 Rmu_sc0006240.1_g000009 Rmu_sc0007857.1_g000006 Rmu_sc0016364.1_g000002 Rmu_sc0016407.1_g000001 Rmu_sc0023052.1_g000001
rosa_roxburghii	Rroxscaffold_2G00114980 Rroxscaffold_3G00243850 Rroxscaffold_5G00342010 Rroxscaffold_7G00186190
rosa_rugosa	Rorug06G0064100 Rorug07G0156600 Rorug07G0157900 Rorug07G0158000
rosa_samantha	Rh1BG116200 Rh6AG181800 Rh6BG185400 Rh6CG182900 Rh6CG183200 Rh6DG174300 Rh6DG174600 Rh7AG294600 Rh7AG306400 Rh7AG306500 Rh7BG286400 Rh7CG314600 Rh7CG325500 Rh7DG296900 Rh7DG299400 Rh7DG306200
rosa_wichuraiana	Rw6G015640 Rw7G026030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	138, 448, 875, 878
AclWI	GGATC	1 cut(s)	812
AcsI	RAATTY	2 cut(s)	469, 681
AcuI	CTGAAG	1 cut(s)	17
AfiI	CCNNNNNNNGG	2 cut(s)	382, 932
AflIII	ACRYGT	1 cut(s)	349
AgsI	TTSAA	5 cut(s)	43, 271, 508, 680, 793
AluBI	AGCT	4 cut(s)	53, 191, 656, 866
AluI	AGCT	4 cut(s)	53, 191, 656, 866
Alw26I	GTCTC	5 cut(s)	282, 302, 302, 358, 456
AlwI	GGATC	1 cut(s)	812
AlwNI	CAGNNNCTG	1 cut(s)	439
ApoI	RAATTY	2 cut(s)	469, 681
AspLEI	GCGC	1 cut(s)	70
AsuHPI	GGTGA	3 cut(s)	152, 575, 583
BccI	CCATC	3 cut(s)	319, 562, 593
BcoDI	GTCTC	5 cut(s)	282, 302, 302, 358, 456
BfaI	CTAG	1 cut(s)	647
BfmI	CTRYAG	1 cut(s)	431
BisI	GCNGC	1 cut(s)	876
BlpI	GCTNAGC	1 cut(s)	192
BlsI	GCNGC	1 cut(s)	877
BmiI	GGNNCC	1 cut(s)	961
BmsI	GCATC	3 cut(s)	249, 661, 871
BoxI	GACNNNNGTC	1 cut(s)	294
BpmI	CTGGAG	1 cut(s)	908
Bpu1102I	GCTNAGC	1 cut(s)	192
BpuEI	CTTGAG	1 cut(s)	659
BsaAI	YACGTR	2 cut(s)	20, 519
BsaI	GGTCTC	1 cut(s)	456
BsaXI	ACNNNNNCTCC	2 cut(s)	299, 329
Bsc4I	CCNNNNNNNGG	2 cut(s)	382, 932
Bse1I	ACTGG	1 cut(s)	891
Bse3DI	GCAATG	3 cut(s)	153, 594, 744
BseGI	GGATG	1 cut(s)	886
BseLI	CCNNNNNNNGG	2 cut(s)	382, 932
BseMI	GCAATG	3 cut(s)	153, 594, 744
BseNI	ACTGG	1 cut(s)	891
BseRI	GAGGAG	1 cut(s)	295
BslFI	GGGAC	1 cut(s)	949
BslI	CCNNNNNNNGG	2 cut(s)	382, 932
BsmAI	GTCTC	5 cut(s)	282, 302, 302, 358, 456
BsmBI	CGTCTC	1 cut(s)	302
BsmFI	GGGAC	1 cut(s)	949
Bso31I	GGTCTC	1 cut(s)	456
Bsp143I	GATC	3 cut(s)	658, 741, 817
Bsp1720I	GCTNAGC	1 cut(s)	192
BspACI	CCGC	4 cut(s)	138, 448, 875, 878
BspLI	GGNNCC	1 cut(s)	961
BspMAI	CTGCAG	1 cut(s)	435
BspPI	GGATC	1 cut(s)	812
BspQI	GCTCTTC	1 cut(s)	646
BspTNI	GGTCTC	1 cut(s)	456
BsrDI	GCAATG	3 cut(s)	153, 594, 744
BsrI	ACTGG	1 cut(s)	891
BssMI	GATC	3 cut(s)	658, 741, 817
Bst4CI	ACNGT	1 cut(s)	313
Bst6I	CTCTTC	1 cut(s)	646
BstBAI	YACGTR	2 cut(s)	20, 519
BstC8I	GCNNGC	3 cut(s)	66, 713, 814
BstDEI	CTNAG	2 cut(s)	192, 411
BstF5I	GGATG	1 cut(s)	886
BstHHI	GCGC	1 cut(s)	70
BstKTI	GATC	3 cut(s)	661, 744, 820
BstMAI	GTCTC	5 cut(s)	282, 302, 302, 358, 456
BstMBI	GATC	3 cut(s)	658, 741, 817
BstMWI	GCNNNNNNNGC	3 cut(s)	593, 872, 881
BstNSI	RCATGY	3 cut(s)	68, 200, 353
BstPAI	GACNNNNGTC	1 cut(s)	294
BstSFI	CTRYAG	1 cut(s)	431
BstSNI	TACGTA	1 cut(s)	519
BtsCI	GGATG	1 cut(s)	886
BtsI	GCAGTG	1 cut(s)	440
BtsIMutI	CAGTG	3 cut(s)	440, 492, 884
Cac8I	GCNNGC	3 cut(s)	66, 713, 814
CaiI	CAGNNNCTG	1 cut(s)	439
CfoI	GCGC	1 cut(s)	70
CviAII	CATG	6 cut(s)	65, 197, 277, 350, 455, 694
CviJI	RGCY	7 cut(s)	53, 181, 191, 344, 464, 656, 866
CviKI_1	RGCY	7 cut(s)	53, 181, 191, 344, 464, 656, 866
DdeI	CTNAG	2 cut(s)	192, 411
DpnI	GATC	3 cut(s)	660, 743, 819
DpnII	GATC	3 cut(s)	658, 741, 817
Eam1104I	CTCTTC	1 cut(s)	646
EarI	CTCTTC	1 cut(s)	646
EciI	GGCGGA	1 cut(s)	893
Eco105I	TACGTA	1 cut(s)	519
Eco31I	GGTCTC	1 cut(s)	456
Eco57I	CTGAAG	1 cut(s)	17
Esp3I	CGTCTC	1 cut(s)	302
FaeI	CATG	6 cut(s)	68, 200, 280, 353, 458, 697
FalI	AAGNNNNNCTT	2 cut(s)	135, 167
FaqI	GGGAC	1 cut(s)	949
FatI	CATG	6 cut(s)	64, 196, 276, 349, 454, 693
Fnu4HI	GCNGC	1 cut(s)	876
FokI	GGATG	1 cut(s)	893
Fsp4HI	GCNGC	1 cut(s)	876
FspBI	CTAG	1 cut(s)	647
GlaI	GCGC	1 cut(s)	69
GluI	GCNGC	1 cut(s)	876
GsuI	CTGGAG	1 cut(s)	908
HhaI	GCGC	1 cut(s)	70
Hin1II	CATG	6 cut(s)	68, 200, 280, 353, 458, 697
Hin6I	GCGC	1 cut(s)	68
HinP1I	GCGC	1 cut(s)	68
HinfI	GANTC	2 cut(s)	283, 504
HphI	GGTGA	3 cut(s)	152, 575, 583
Hpy166II	GTNNAC	1 cut(s)	784
Hpy188I	TCNGA	4 cut(s)	36, 377, 663, 870
Hpy188III	TCNNGA	6 cut(s)	287, 299, 355, 611, 638, 793
Hpy8I	GTNNAC	1 cut(s)	784
HpyAV	CCTTC	2 cut(s)	37, 484
HpyCH4III	ACNGT	1 cut(s)	313
HpyCH4IV	ACGT	4 cut(s)	19, 264, 295, 518
HpyCH4V	TGCA	7 cut(s)	110, 262, 433, 620, 674, 737, 884
HpyF10VI	GCNNNNNNNGC	3 cut(s)	593, 872, 881
HpyF3I	CTNAG	2 cut(s)	192, 411
HpySE526I	ACGT	4 cut(s)	19, 264, 295, 518
Hsp92II	CATG	6 cut(s)	68, 200, 280, 353, 458, 697
HspAI	GCGC	1 cut(s)	68
Kzo9I	GATC	3 cut(s)	658, 741, 817
LguI	GCTCTTC	1 cut(s)	646
LpnPI	CCDG	5 cut(s)	330, 624, 729, 837, 872
LweI	GCATC	3 cut(s)	249, 661, 871
MaeI	CTAG	1 cut(s)	647
MaeII	ACGT	4 cut(s)	19, 264, 295, 518
MaeIII	GTNAC	1 cut(s)	629
MalI	GATC	3 cut(s)	660, 743, 819
MboI	GATC	3 cut(s)	658, 741, 817
MboII	GAAGA	3 cut(s)	23, 249, 663
MlyI	GAGTC	1 cut(s)	292
MmeI	TCCRAC	1 cut(s)	378
MnlI	CCTC	8 cut(s)	119, 230, 273, 333, 567, 634, 908, 955
MseI	TTAA	6 cut(s)	162, 174, 249, 480, 861, 908
MwoI	GCNNNNNNNGC	3 cut(s)	593, 872, 881
NdeII	GATC	3 cut(s)	658, 741, 817
NlaIII	CATG	6 cut(s)	68, 200, 280, 353, 458, 697
NlaIV	GGNNCC	1 cut(s)	961
NmeAIII	GCCGAG	1 cut(s)	362
NspI	RCATGY	3 cut(s)	68, 200, 353
PaeI	GCATGC	1 cut(s)	68
PciI	ACATGT	1 cut(s)	349
PciSI	GCTCTTC	1 cut(s)	646
PcsI	WCGNNNNNNNCGW	1 cut(s)	292
PfeI	GAWTC	1 cut(s)	504
PflFI	GACNNNGTC	1 cut(s)	313
PkrI	GCNGC	1 cut(s)	877
PleI	GAGTC	1 cut(s)	291
PpsI	GAGTC	1 cut(s)	291
Ppu21I	YACGTR	2 cut(s)	20, 519
PscI	ACATGT	1 cut(s)	349
PshAI	GACNNNNGTC	1 cut(s)	294
PspN4I	GGNNCC	1 cut(s)	961
PstI	CTGCAG	1 cut(s)	435
PstNI	CAGNNNCTG	1 cut(s)	439
PsyI	GACNNNGTC	1 cut(s)	313
SapI	GCTCTTC	1 cut(s)	646
SaqAI	TTAA	6 cut(s)	162, 174, 249, 480, 861, 908
SatI	GCNGC	1 cut(s)	876
Sau3AI	GATC	3 cut(s)	658, 741, 817
SchI	GAGTC	1 cut(s)	292
SfaNI	GCATC	3 cut(s)	249, 661, 871
SfcI	CTRYAG	1 cut(s)	431
SmlI	CTYRAG	1 cut(s)	638
SmoI	CTYRAG	1 cut(s)	638
SnaBI	TACGTA	1 cut(s)	519
SphI	GCATGC	1 cut(s)	68
SsiI	CCGC	4 cut(s)	138, 448, 875, 878
SspI	AATATT	1 cut(s)	769
SspMI	CTAG	1 cut(s)	647
TaaI	ACNGT	1 cut(s)	313
TaiI	ACGT	4 cut(s)	22, 267, 298, 521
TaqI	TCGA	7 cut(s)	72, 286, 300, 317, 356, 803, 913
TauI	GCSGC	1 cut(s)	878
TfiI	GAWTC	1 cut(s)	504
Tru1I	TTAA	6 cut(s)	162, 174, 249, 480, 861, 908
Tru9I	TTAA	6 cut(s)	162, 174, 249, 480, 861, 908
TscAI	CASTG	3 cut(s)	440, 492, 891
TspDTI	ATGAA	3 cut(s)	191, 710, 789
TspRI	CASTG	3 cut(s)	440, 492, 891
Tth111I	GACNNNGTC	1 cut(s)	313
XapI	RAATTY	2 cut(s)	469, 681
XceI	RCATGY	3 cut(s)	68, 200, 353
XspI	CTAG	1 cut(s)	647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.