Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006240.1

Orthogroup ID

OG0001315

Physical Location & Seq

Genomic Coordinates Reverse (-)

63798 .. 64185

Gene Structure 388 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006240.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

atgtcgagtaatggttgtgatccaaatgttgatacttataccaaattgattgctgcaggtttccttaaagcccggaaagtggcagatgcactggagatgtttgatgagatgttaagtcgaggatttgttcctacgatggggactataactacttttatggaagccttatgtagctatggtccaccatatgctgctaatcctgctatgatgttctaccagaaagcaagaaaggaatgtggttatgcttctgatatcgaagtttatgagtatgcaatcatggaagagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

95

Amino Acids

10.58

Weight (kDa)

4.6

Isoelectric Point (pI)

37.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43820
fragaria_vesca	FvH4_5g24880 FvH4_5g25350 FvH4_5g25520
malus_domestica	MD16G1284000.v1.1
prunus_persica	Prupe.5G009500_v2.0.a1
pyrus_communis	pycom16g26010
rosa_chinensis	RchiOBHm_Chr6g0271861 RchiOBHm_Chr6g0271871 RchiOBHm_Chr6g0271981 RchiOBHm_Chr7g0215761 RchiOBHm_Chr7g0215771 RchiOBHm_Chr7g0215901 RchiOBHm_Chr7g0217231 RchiOBHm_Chr7g0219831
rosa_laevigata	RLG00000002611 RLG00000002625 RLG00000013566
rosa_multiflora	Rmu_sc0000055.1_g000008 Rmu_sc0000055.1_g000009 Rmu_sc0000516.1_g000005 Rmu_sc0000516.1_g000006 Rmu_sc0004379.1_g000016 Rmu_sc0006240.1_g000009 Rmu_sc0007857.1_g000006 Rmu_sc0016364.1_g000002 Rmu_sc0016407.1_g000001 Rmu_sc0023052.1_g000001
rosa_roxburghii	Rroxscaffold_2G00114980 Rroxscaffold_3G00243850 Rroxscaffold_5G00342010 Rroxscaffold_7G00186190
rosa_rugosa	Rorug06G0064100 Rorug07G0156600 Rorug07G0157900 Rorug07G0158000
rosa_samantha	Rh1BG116200 Rh6AG181800 Rh6BG185400 Rh6CG182900 Rh6CG183200 Rh6DG174300 Rh6DG174600 Rh7AG294600 Rh7AG306400 Rh7AG306500 Rh7BG286400 Rh7CG314600 Rh7CG325500 Rh7DG296900 Rh7DG299400 Rh7DG306200
rosa_wichuraiana	Rw6G015640 Rw7G026030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	47
AclWI	GGATC	1 cut(s)	14
AfiI	CCNNNNNNNGG	2 cut(s)	79, 137
AluBI	AGCT	1 cut(s)	174
AluI	AGCT	1 cut(s)	174
AlwI	GGATC	1 cut(s)	14
ApeKI	GCWGC	2 cut(s)	53, 191
AspS9I	GGNCC	1 cut(s)	179
AsuC2I	CCSGG	1 cut(s)	73
AvaII	GGWCC	1 cut(s)	179
BbvI	GCAGC	2 cut(s)	40, 178
BccI	CCATC	1 cut(s)	130
BcnI	CCSGG	1 cut(s)	73
BfmI	CTRYAG	1 cut(s)	54
BfuAI	ACCTGC	1 cut(s)	47
BisI	GCNGC	2 cut(s)	54, 192
BlsI	GCNGC	2 cut(s)	55, 193
Bme1390I	CCNGG	1 cut(s)	73
Bme18I	GGWCC	1 cut(s)	179
BmgT120I	GGNCC	1 cut(s)	179
BmrFI	CCNGG	1 cut(s)	73
BmsI	GCATC	1 cut(s)	76
BpmI	CTGGAG	1 cut(s)	113
BpuMI	CCSGG	1 cut(s)	73
Bsc4I	CCNNNNNNNGG	2 cut(s)	79, 137
Bse1I	ACTGG	1 cut(s)	96
BseLI	CCNNNNNNNGG	2 cut(s)	79, 137
BseNI	ACTGG	1 cut(s)	96
BseXI	GCAGC	2 cut(s)	40, 178
BsiSI	CCGG	1 cut(s)	73
BslFI	GGGAC	1 cut(s)	154
BslI	CCNNNNNNNGG	2 cut(s)	79, 137
BsmFI	GGGAC	1 cut(s)	154
Bsp143I	GATC	1 cut(s)	19
BspMAI	CTGCAG	1 cut(s)	58
BspMI	ACCTGC	1 cut(s)	47
BspPI	GGATC	1 cut(s)	14
BsrI	ACTGG	1 cut(s)	96
BssMI	GATC	1 cut(s)	19
Bst6I	CTCTTC	1 cut(s)	276
BstKTI	GATC	1 cut(s)	22
BstMBI	GATC	1 cut(s)	19
BstMWI	GCNNNNNNNGC	1 cut(s)	200
BstSCI	CCNGG	1 cut(s)	71
BstSFI	CTRYAG	1 cut(s)	54
BstV1I	GCAGC	2 cut(s)	40, 178
BtsIMutI	CAGTG	1 cut(s)	89
BveI	ACCTGC	1 cut(s)	47
Cfr13I	GGNCC	1 cut(s)	179
CviAII	CATG	1 cut(s)	277
CviJI	RGCY	3 cut(s)	71, 164, 174
CviKI_1	RGCY	3 cut(s)	71, 164, 174
DpnI	GATC	1 cut(s)	21
DpnII	GATC	1 cut(s)	19
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
Eco32I	GATATC	1 cut(s)	253
Eco47I	GGWCC	1 cut(s)	179
EcoRV	GATATC	1 cut(s)	253
FaeI	CATG	1 cut(s)	280
FaqI	GGGAC	1 cut(s)	154
FatI	CATG	1 cut(s)	276
FauNDI	CATATG	1 cut(s)	187
Fnu4HI	GCNGC	2 cut(s)	54, 192
Fsp4HI	GCNGC	2 cut(s)	54, 192
GluI	GCNGC	2 cut(s)	54, 192
GsuI	CTGGAG	1 cut(s)	113
HapII	CCGG	1 cut(s)	73
Hin1II	CATG	1 cut(s)	280
HpaII	CCGG	1 cut(s)	73
Hpy166II	GTNNAC	1 cut(s)	182
Hpy188I	TCNGA	1 cut(s)	250
Hpy8I	GTNNAC	1 cut(s)	182
HpyCH4V	TGCA	3 cut(s)	56, 89, 272
HpyF10VI	GCNNNNNNNGC	1 cut(s)	200
Hsp92II	CATG	1 cut(s)	280
Kzo9I	GATC	1 cut(s)	19
LpnPI	CCDG	5 cut(s)	42, 77, 86, 213, 230
Lsp1109I	GCAGC	2 cut(s)	40, 178
LweI	GCATC	1 cut(s)	76
MalI	GATC	1 cut(s)	21
MboI	GATC	1 cut(s)	19
MluCI	AATT	1 cut(s)	44
MnlI	CCTC	1 cut(s)	113
MseI	TTAA	2 cut(s)	66, 113
MspI	CCGG	1 cut(s)	73
MspR9I	CCNGG	1 cut(s)	73
MwoI	GCNNNNNNNGC	1 cut(s)	200
NciI	CCSGG	1 cut(s)	73
NdeI	CATATG	1 cut(s)	187
NdeII	GATC	1 cut(s)	19
NlaIII	CATG	1 cut(s)	280
PkrI	GCNGC	2 cut(s)	55, 193
PspPI	GGNCC	1 cut(s)	179
PstI	CTGCAG	1 cut(s)	58
SaqAI	TTAA	2 cut(s)	66, 113
SatI	GCNGC	2 cut(s)	54, 192
Sau3AI	GATC	1 cut(s)	19
Sau96I	GGNCC	1 cut(s)	179
ScrFI	CCNGG	1 cut(s)	73
SetI	ASST	2 cut(s)	61, 176
SfaNI	GCATC	1 cut(s)	76
SfcI	CTRYAG	1 cut(s)	54
SgeI	CNNG	9 cut(s)	18, 69, 84, 85, 104, 131, 212, 229, 237
SinI	GGWCC	1 cut(s)	179
Sse9I	AATT	1 cut(s)	44
StyD4I	CCNGG	1 cut(s)	71
TaqI	TCGA	3 cut(s)	5, 118, 255
TasI	AATT	1 cut(s)	44
Tru1I	TTAA	2 cut(s)	66, 113
Tru9I	TTAA	2 cut(s)	66, 113
TscAI	CASTG	1 cut(s)	96
TseI	GCWGC	2 cut(s)	53, 191
TspRI	CASTG	1 cut(s)	96
VpaK11BI	GGWCC	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.