Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001315

Physical Location & Seq

Genomic Coordinates Reverse (-)

33418018 .. 33418712

Gene Structure 695 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19304

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGTCGAGTAATGCTTGCGATCCAAATGTTGATACTTATACCAAATTGATTACCGGTTTCCTTAAAGCCCGGAAAGTGGCGGATGCACTGGAGATGTTTGATGAGACGTTAAGTCGAGGATTTGTTCCTACTACGGGGACTATAACCTCTTTTATGGAACCCCTATGTAGCTATGGTCCACCAAATGCTGCTATGATGATTTACCAGGAAGCAAGAAAGGTCGGATGTAGAATATCATTGACTACTTATAAGCTATTGCTTATGCGCCTTTCTAGATTTGGTAAATGTGGAATGTTGCTAAACATTTGGGAAGAGATGCAGGAATGTGGTTATGCTTCTGATATCGAAGTTTATGAGTATGTAATCAGTGGACTTTGTAACATTAGGCAGCTTGAAAATGCTGTACTTGTCATGGAAGAGTCTCTACGAAAAGGTTTTTGCCCAAGCAGGCTTACCTATAGCAAACTAAGTAACAAACTTCTTGCTTCAAATAAGTTAGAGAGGGCTTATAAGCTATACTTGAAGATTAAAGCTGCTCGTTGCTTTGACAAGACACAGAGAATTTGGCGTGCTAGGGGATGGCATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

196

Amino Acids

22.47

Weight (kDa)

9.18

Isoelectric Point (pI)

33.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	6 - 35	8.4e-06	PPR repeat
PPR_2	PF13041	8 - 56	1e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43820
fragaria_vesca	FvH4_5g24880 FvH4_5g25350 FvH4_5g25520
malus_domestica	MD16G1284000.v1.1
prunus_persica	Prupe.5G009500_v2.0.a1
pyrus_communis	pycom16g26010
rosa_chinensis	RchiOBHm_Chr6g0271861 RchiOBHm_Chr6g0271871 RchiOBHm_Chr6g0271981 RchiOBHm_Chr7g0215761 RchiOBHm_Chr7g0215771 RchiOBHm_Chr7g0215901 RchiOBHm_Chr7g0217231 RchiOBHm_Chr7g0219831
rosa_laevigata	RLG00000002611 RLG00000002625 RLG00000013566
rosa_multiflora	Rmu_sc0000055.1_g000008 Rmu_sc0000055.1_g000009 Rmu_sc0000516.1_g000005 Rmu_sc0000516.1_g000006 Rmu_sc0004379.1_g000016 Rmu_sc0006240.1_g000009 Rmu_sc0007857.1_g000006 Rmu_sc0016364.1_g000002 Rmu_sc0016407.1_g000001 Rmu_sc0023052.1_g000001
rosa_roxburghii	Rroxscaffold_2G00114980 Rroxscaffold_3G00243850 Rroxscaffold_5G00342010 Rroxscaffold_7G00186190
rosa_rugosa	Rorug06G0064100 Rorug07G0156600 Rorug07G0157900 Rorug07G0158000
rosa_samantha	Rh1BG116200 Rh6AG181800 Rh6BG185400 Rh6CG182900 Rh6CG183200 Rh6DG174300 Rh6DG174600 Rh7AG294600 Rh7AG306400 Rh7AG306500 Rh7BG286400 Rh7CG314600 Rh7CG325500 Rh7DG296900 Rh7DG299400 Rh7DG306200
rosa_wichuraiana	Rw6G015640 Rw7G026030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	249, 510
AciI	CCGC	1 cut(s)	80
AclWI	GGATC	1 cut(s)	14
AcsI	RAATTY	1 cut(s)	561
AfaI	GTAC	1 cut(s)	405
AfiI	CCNNNNNNNGG	2 cut(s)	76, 134
AgeI	ACCGGT	1 cut(s)	53
AgsI	TTSAA	3 cut(s)	395, 489, 523
AhdI	GACNNNNNGTC	1 cut(s)	111
AjnI	CCWGG	1 cut(s)	204
AluBI	AGCT	5 cut(s)	171, 253, 391, 514, 533
AluI	AGCT	5 cut(s)	171, 253, 391, 514, 533
Alw26I	GTCTC	2 cut(s)	98, 426
AlwI	GGATC	1 cut(s)	14
ApeKI	GCWGC	3 cut(s)	188, 388, 533
ApoI	RAATTY	1 cut(s)	561
AsiGI	ACCGGT	1 cut(s)	53
AspLEI	GCGC	1 cut(s)	267
AspS9I	GGNCC	1 cut(s)	176
AsuC2I	CCSGG	1 cut(s)	70
AvaII	GGWCC	1 cut(s)	176
BarI	GAAGNNNNNNTAC	2 cut(s)	408, 440
BbvI	GCAGC	3 cut(s)	175, 400, 520
BccI	CCATC	1 cut(s)	573
BciT130I	CCWGG	1 cut(s)	206
BcnI	CCSGG	1 cut(s)	70
BcoDI	GTCTC	2 cut(s)	98, 426
BfaI	CTAG	2 cut(s)	273, 573
BfmI	CTRYAG	1 cut(s)	457
BisI	GCNGC	3 cut(s)	189, 389, 534
BlsI	GCNGC	3 cut(s)	190, 390, 535
Bme1390I	CCNGG	2 cut(s)	70, 206
Bme18I	GGWCC	1 cut(s)	176
BmeRI	GACNNNNNGTC	1 cut(s)	111
BmgT120I	GGNCC	1 cut(s)	176
BmiI	GGNNCC	1 cut(s)	159
BmrFI	CCNGG	2 cut(s)	70, 206
BmsI	GCATC	2 cut(s)	73, 306
BpmI	CTGGAG	1 cut(s)	110
BpuMI	CCSGG	1 cut(s)	70
BsaWI	WCCGGW	1 cut(s)	53
Bsc4I	CCNNNNNNNGG	2 cut(s)	76, 134
Bse118I	RCCGGY	1 cut(s)	53
Bse1I	ACTGG	1 cut(s)	93
BseBI	CCWGG	1 cut(s)	206
BseGI	GGATG	3 cut(s)	88, 230, 584
BseLI	CCNNNNNNNGG	2 cut(s)	76, 134
BseNI	ACTGG	1 cut(s)	93
BseXI	GCAGC	3 cut(s)	175, 400, 520
BshTI	ACCGGT	1 cut(s)	53
BsiSI	CCGG	2 cut(s)	54, 70
BslFI	GGGAC	1 cut(s)	151
BslI	CCNNNNNNNGG	2 cut(s)	76, 134
BsmAI	GTCTC	2 cut(s)	98, 426
BsmBI	CGTCTC	1 cut(s)	98
BsmFI	GGGAC	1 cut(s)	151
Bsp143I	GATC	1 cut(s)	19
BspACI	CCGC	1 cut(s)	80
BspLI	GGNNCC	1 cut(s)	159
BspPI	GGATC	1 cut(s)	14
BsrFI	RCCGGY	1 cut(s)	53
BsrI	ACTGG	1 cut(s)	93
BssAI	RCCGGY	1 cut(s)	53
BssMI	GATC	1 cut(s)	19
Bst2UI	CCWGG	1 cut(s)	206
Bst6I	CTCTTC	2 cut(s)	306, 411
BstC8I	GCNNGC	3 cut(s)	16, 449, 570
BstDEI	CTNAG	1 cut(s)	467
BstF5I	GGATG	3 cut(s)	88, 230, 584
BstHHI	GCGC	1 cut(s)	267
BstKTI	GATC	1 cut(s)	22
BstMAI	GTCTC	2 cut(s)	98, 426
BstMBI	GATC	1 cut(s)	19
BstNI	CCWGG	1 cut(s)	206
BstSCI	CCNGG	2 cut(s)	68, 204
BstSFI	CTRYAG	1 cut(s)	457
BstV1I	GCAGC	3 cut(s)	175, 400, 520
BtsCI	GGATG	3 cut(s)	88, 230, 584
BtsIMutI	CAGTG	2 cut(s)	86, 373
Cac8I	GCNNGC	3 cut(s)	16, 449, 570
CfoI	GCGC	1 cut(s)	267
Cfr10I	RCCGGY	1 cut(s)	53
Cfr13I	GGNCC	1 cut(s)	176
Csp6I	GTAC	1 cut(s)	404
CspAI	ACCGGT	1 cut(s)	53
CviAII	CATG	1 cut(s)	412
CviJI	RGCY	8 cut(s)	68, 171, 253, 391, 451, 506, 514, 533
CviKI_1	RGCY	8 cut(s)	68, 171, 253, 391, 451, 506, 514, 533
CviQI	GTAC	1 cut(s)	404
DdeI	CTNAG	1 cut(s)	467
DpnI	GATC	1 cut(s)	21
DpnII	GATC	1 cut(s)	19
DriI	GACNNNNNGTC	1 cut(s)	111
Eam1104I	CTCTTC	2 cut(s)	306, 411
Eam1105I	GACNNNNNGTC	1 cut(s)	111
EarI	CTCTTC	2 cut(s)	306, 411
EciI	GGCGGA	1 cut(s)	95
Eco32I	GATATC	1 cut(s)	343
Eco47I	GGWCC	1 cut(s)	176
EcoRII	CCWGG	1 cut(s)	204
EcoRV	GATATC	1 cut(s)	343
Esp3I	CGTCTC	1 cut(s)	98
FaeI	CATG	1 cut(s)	415
FalI	AAGNNNNNCTT	2 cut(s)	503, 535
FaqI	GGGAC	1 cut(s)	151
FatI	CATG	1 cut(s)	411
Fnu4HI	GCNGC	3 cut(s)	189, 389, 534
FokI	GGATG	2 cut(s)	95, 237
Fsp4HI	GCNGC	3 cut(s)	189, 389, 534
FspBI	CTAG	2 cut(s)	273, 573
GlaI	GCGC	1 cut(s)	266
GluI	GCNGC	3 cut(s)	189, 389, 534
GsuI	CTGGAG	1 cut(s)	110
HapII	CCGG	2 cut(s)	54, 70
HhaI	GCGC	1 cut(s)	267
Hin1II	CATG	1 cut(s)	415
Hin6I	GCGC	1 cut(s)	265
HinP1I	GCGC	1 cut(s)	265
HinfI	GANTC	1 cut(s)	419
HpaII	CCGG	2 cut(s)	54, 70
Hpy166II	GTNNAC	2 cut(s)	179, 371
Hpy188I	TCNGA	3 cut(s)	224, 340, 590
Hpy188III	TCNNGA	1 cut(s)	273
Hpy8I	GTNNAC	2 cut(s)	179, 371
HpyCH4IV	ACGT	1 cut(s)	107
HpyCH4V	TGCA	2 cut(s)	86, 319
HpyF3I	CTNAG	1 cut(s)	467
HpySE526I	ACGT	1 cut(s)	107
Hsp92II	CATG	1 cut(s)	415
HspAI	GCGC	1 cut(s)	265
Kzo9I	GATC	1 cut(s)	19
LpnPI	CCDG	7 cut(s)	67, 74, 83, 191, 218, 305, 433
Lsp1109I	GCAGC	3 cut(s)	175, 400, 520
LweI	GCATC	2 cut(s)	73, 306
MaeI	CTAG	2 cut(s)	273, 573
MaeII	ACGT	1 cut(s)	107
MaeIII	GTNAC	2 cut(s)	377, 470
MalI	GATC	1 cut(s)	21
MboI	GATC	1 cut(s)	19
MboII	GAAGA	3 cut(s)	323, 428, 535
MluCI	AATT	2 cut(s)	44, 561
MlyI	GAGTC	1 cut(s)	428
MmeI	TCCRAC	1 cut(s)	202
MnlI	CCTC	3 cut(s)	110, 157, 495
MseI	TTAA	3 cut(s)	63, 110, 528
MspI	CCGG	2 cut(s)	54, 70
MspR9I	CCNGG	2 cut(s)	70, 206
MvaI	CCWGG	1 cut(s)	206
NciI	CCSGG	1 cut(s)	70
NdeII	GATC	1 cut(s)	19
NlaIII	CATG	1 cut(s)	415
NlaIV	GGNNCC	1 cut(s)	159
PinAI	ACCGGT	1 cut(s)	53
PkrI	GCNGC	3 cut(s)	190, 390, 535
PleI	GAGTC	1 cut(s)	427
PpsI	GAGTC	1 cut(s)	427
PsiI	TTATAA	2 cut(s)	249, 510
Psp6I	CCWGG	1 cut(s)	204
PspGI	CCWGG	1 cut(s)	204
PspN4I	GGNNCC	1 cut(s)	159
PspPI	GGNCC	1 cut(s)	176
RsaI	GTAC	1 cut(s)	405
RsaNI	GTAC	1 cut(s)	404
SaqAI	TTAA	3 cut(s)	63, 110, 528
SatI	GCNGC	3 cut(s)	189, 389, 534
Sau3AI	GATC	1 cut(s)	19
Sau96I	GGNCC	1 cut(s)	176
SchI	GAGTC	1 cut(s)	428
ScrFI	CCNGG	2 cut(s)	70, 206
SfaNI	GCATC	2 cut(s)	73, 306
SfcI	CTRYAG	1 cut(s)	457
SinI	GGWCC	1 cut(s)	176
Sse9I	AATT	2 cut(s)	44, 561
SsiI	CCGC	1 cut(s)	80
SspMI	CTAG	2 cut(s)	273, 573
StyD4I	CCNGG	2 cut(s)	68, 204
TaiI	ACGT	1 cut(s)	110
TaqI	TCGA	3 cut(s)	5, 115, 345
TasI	AATT	2 cut(s)	44, 561
TatI	WGTACW	1 cut(s)	403
Tru1I	TTAA	3 cut(s)	63, 110, 528
Tru9I	TTAA	3 cut(s)	63, 110, 528
TscAI	CASTG	2 cut(s)	93, 373
TseI	GCWGC	3 cut(s)	188, 388, 533
TspRI	CASTG	2 cut(s)	93, 373
VpaK11BI	GGWCC	1 cut(s)	176
XapI	RAATTY	1 cut(s)	561
XbaI	TCTAGA	1 cut(s)	272
XspI	CTAG	2 cut(s)	273, 573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.