Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001315

Physical Location & Seq

Genomic Coordinates Reverse (-)

17019923 .. 17021022

Gene Structure 1100 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g25520.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGTCAGCAATTCCATGGGCTCACGTGAGGCTTGCTTGGACACAGACAGGTGCATAGAAAGTGCTCATGTTGATATGTACCCCAAATGTGGTTATGTAACTGAGGCGCATGCGGTATTTGAGAGGATTACTGACCCTGATACAATTTCGTGGTCTACCATTTTATCAGGCCATAGAGGTATGGTAGAAGAAGGTCTTCATCATTTCAGTTTAATGAAACAATCTTATCCCGTGAGCCATCTTAATGAGGCAATGGAATTCATAAAAAAGATGCCAACTGAGCCCAATGAAATTGTCTGGCAGGCTTTATTGGCAGCATGTAGGGTCTATGAAAATGTGGAGTTAGAGGAGATTGCAGCCAGACACCGGTGCATACAATGCAATGATCTTTTGCTTAGAGCCCAAAAAGTGGCGGATGCACTAGAGATGTTTGATGAGATGTTAAGTCGAGGATTTGTTGCTACTATGGGGATTATAACCTCTTTTATGAAACCCTTGTGTAGCTATGGTCAACCATATGCTGCTATGATGATCTATGAGAAAGCAAGGATGGTCGGATGTAGAATATCATTGGCTGCTTATAAACTATTGCTTATGCGCCTTTATAGATTTGGTAAATGTGGAATGTTGCTAACCATTTGGGATGAGATGCAGGAATGTGGTTATGCTTCTGATATTGAAGTTTATGAGTACGTAATCAGTGGACTTTGCAACATAGGGAAGCTTGAAAATGTTGTACTTGTCATGGAAGAGTCACTATCAGGACAAGCACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

259

Amino Acids

29.22

Weight (kDa)

5.14

Isoelectric Point (pI)

33.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43820
fragaria_vesca	FvH4_5g24880 FvH4_5g25350 FvH4_5g25520
malus_domestica	MD16G1284000.v1.1
prunus_persica	Prupe.5G009500_v2.0.a1
pyrus_communis	pycom16g26010
rosa_chinensis	RchiOBHm_Chr6g0271861 RchiOBHm_Chr6g0271871 RchiOBHm_Chr6g0271981 RchiOBHm_Chr7g0215761 RchiOBHm_Chr7g0215771 RchiOBHm_Chr7g0215901 RchiOBHm_Chr7g0217231 RchiOBHm_Chr7g0219831
rosa_laevigata	RLG00000002611 RLG00000002625 RLG00000013566
rosa_multiflora	Rmu_sc0000055.1_g000008 Rmu_sc0000055.1_g000009 Rmu_sc0000516.1_g000005 Rmu_sc0000516.1_g000006 Rmu_sc0004379.1_g000016 Rmu_sc0006240.1_g000009 Rmu_sc0007857.1_g000006 Rmu_sc0016364.1_g000002 Rmu_sc0016407.1_g000001 Rmu_sc0023052.1_g000001
rosa_roxburghii	Rroxscaffold_2G00114980 Rroxscaffold_3G00243850 Rroxscaffold_5G00342010 Rroxscaffold_7G00186190
rosa_rugosa	Rorug06G0064100 Rorug07G0156600 Rorug07G0157900 Rorug07G0158000
rosa_samantha	Rh1BG116200 Rh6AG181800 Rh6BG185400 Rh6CG182900 Rh6CG183200 Rh6DG174300 Rh6DG174600 Rh7AG294600 Rh7AG306400 Rh7AG306500 Rh7BG286400 Rh7CG314600 Rh7CG325500 Rh7DG296900 Rh7DG299400 Rh7DG306200
rosa_wichuraiana	Rw6G015640 Rw7G026030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	476, 582
AccB7I	CCANNNNNTGG	1 cut(s)	409
AccI	GTMKAC	1 cut(s)	155
AciI	CCGC	2 cut(s)	113, 413
AcsI	RAATTY	1 cut(s)	257
AcvI	CACGTG	1 cut(s)	26
AfaI	GTAC	3 cut(s)	80, 692, 738
AfiI	CCNNNNNNNGG	3 cut(s)	89, 366, 409
AgeI	ACCGGT	1 cut(s)	366
AgsI	TTSAA	2 cut(s)	680, 728
AluBI	AGCT	2 cut(s)	504, 724
AluI	AGCT	2 cut(s)	504, 724
Alw21I	GWGCWC	1 cut(s)	67
AoxI	GGCC	1 cut(s)	169
ApeKI	GCWGC	4 cut(s)	314, 356, 521, 575
ApoI	RAATTY	1 cut(s)	257
AsiGI	ACCGGT	1 cut(s)	366
Asp700I	GAANNNNTTC	1 cut(s)	195
AspLEI	GCGC	2 cut(s)	109, 600
BanII	GRGCYC	3 cut(s)	23, 285, 403
BbrPI	CACGTG	1 cut(s)	26
BbsI	GAAGAC	1 cut(s)	188
Bbv12I	GWGCWC	1 cut(s)	67
BbvI	GCAGC	4 cut(s)	326, 368, 508, 562
BccI	CCATC	2 cut(s)	246, 544
BfaI	CTAG	1 cut(s)	422
BisI	GCNGC	4 cut(s)	315, 357, 522, 576
BlsI	GCNGC	4 cut(s)	316, 358, 523, 577
BmsI	GCATC	3 cut(s)	261, 406, 639
BpiI	GAAGAC	1 cut(s)	188
BsaAI	YACGTR	2 cut(s)	26, 694
BsaJI	CCNNGG	1 cut(s)	15
BsaWI	WCCGGW	1 cut(s)	366
Bsc4I	CCNNNNNNNGG	3 cut(s)	89, 366, 409
Bse118I	RCCGGY	1 cut(s)	366
Bse3DI	GCAATG	2 cut(s)	258, 388
BseDI	CCNNGG	1 cut(s)	15
BseGI	GGATG	4 cut(s)	421, 555, 563, 649
BseLI	CCNNNNNNNGG	3 cut(s)	89, 366, 409
BseMI	GCAATG	2 cut(s)	258, 388
BseMII	CTCAG	2 cut(s)	93, 270
BseRI	GAGGAG	1 cut(s)	362
BseXI	GCAGC	4 cut(s)	326, 368, 508, 562
BshFI	GGCC	1 cut(s)	171
BshTI	ACCGGT	1 cut(s)	366
BsiHKAI	GWGCWC	1 cut(s)	67
BsiSI	CCGG	1 cut(s)	367
BslI	CCNNNNNNNGG	3 cut(s)	89, 366, 409
BsnI	GGCC	1 cut(s)	171
Bsp1286I	GDGCHC	4 cut(s)	23, 67, 285, 403
Bsp143I	GATC	2 cut(s)	385, 531
Bsp19I	CCATGG	1 cut(s)	15
BspACI	CCGC	2 cut(s)	113, 413
BspANI	GGCC	1 cut(s)	171
BspCNI	CTCAG	2 cut(s)	94, 271
BsrDI	GCAATG	2 cut(s)	258, 388
BsrFI	RCCGGY	1 cut(s)	366
BssAI	RCCGGY	1 cut(s)	366
BssECI	CCNNGG	1 cut(s)	15
BssMI	GATC	2 cut(s)	385, 531
BssT1I	CCWWGG	1 cut(s)	15
Bst6I	CTCTTC	1 cut(s)	744
BstAPI	GCANNNNNTGC	1 cut(s)	378
BstBAI	YACGTR	2 cut(s)	26, 694
BstC8I	GCNNGC	3 cut(s)	34, 111, 303
BstDEI	CTNAG	3 cut(s)	102, 279, 395
BstDSI	CCRYGG	1 cut(s)	15
BstF5I	GGATG	4 cut(s)	421, 555, 563, 649
BstHHI	GCGC	2 cut(s)	109, 600
BstKTI	GATC	2 cut(s)	388, 534
BstMBI	GATC	2 cut(s)	385, 531
BstMWI	GCNNNNNNNGC	3 cut(s)	280, 311, 378
BstNSI	RCATGY	2 cut(s)	113, 321
BstSNI	TACGTA	1 cut(s)	694
BstV1I	GCAGC	4 cut(s)	326, 368, 508, 562
BstV2I	GAAGAC	1 cut(s)	188
BsuRI	GGCC	1 cut(s)	171
BtgI	CCRYGG	1 cut(s)	15
BtsCI	GGATG	4 cut(s)	421, 555, 563, 649
BtsIMutI	CAGTG	1 cut(s)	706
Cac8I	GCNNGC	3 cut(s)	34, 111, 303
CfoI	GCGC	2 cut(s)	109, 600
Cfr10I	RCCGGY	1 cut(s)	366
Csp6I	GTAC	3 cut(s)	79, 691, 737
CspAI	ACCGGT	1 cut(s)	366
CviAII	CATG	5 cut(s)	16, 68, 110, 318, 745
CviQI	GTAC	3 cut(s)	79, 691, 737
DdeI	CTNAG	3 cut(s)	102, 279, 395
DpnI	GATC	2 cut(s)	387, 533
DpnII	GATC	2 cut(s)	385, 531
Eam1104I	CTCTTC	1 cut(s)	744
EarI	CTCTTC	1 cut(s)	744
EciI	GGCGGA	1 cut(s)	428
Eco105I	TACGTA	1 cut(s)	694
Eco130I	CCWWGG	1 cut(s)	15
Eco24I	GRGCYC	3 cut(s)	23, 285, 403
Eco72I	CACGTG	1 cut(s)	26
EcoRI	GAATTC	1 cut(s)	257
EcoT14I	CCWWGG	1 cut(s)	15
EcoT38I	GRGCYC	3 cut(s)	23, 285, 403
ErhI	CCWWGG	1 cut(s)	15
FaeI	CATG	5 cut(s)	19, 71, 113, 321, 748
FalI	AAGNNNNNCTT	2 cut(s)	180, 212
FatI	CATG	5 cut(s)	15, 67, 109, 317, 744
FauNDI	CATATG	1 cut(s)	517
FblI	GTMKAC	1 cut(s)	155
Fnu4HI	GCNGC	4 cut(s)	315, 357, 522, 576
FokI	GGATG	4 cut(s)	428, 562, 570, 656
FriOI	GRGCYC	3 cut(s)	23, 285, 403
Fsp4HI	GCNGC	4 cut(s)	315, 357, 522, 576
FspBI	CTAG	1 cut(s)	422
GlaI	GCGC	2 cut(s)	108, 599
GluI	GCNGC	4 cut(s)	315, 357, 522, 576
HaeIII	GGCC	1 cut(s)	171
HapII	CCGG	1 cut(s)	367
HhaI	GCGC	2 cut(s)	109, 600
Hin1II	CATG	5 cut(s)	19, 71, 113, 321, 748
Hin6I	GCGC	2 cut(s)	107, 598
HinP1I	GCGC	2 cut(s)	107, 598
HincII	GTYRAC	1 cut(s)	512
HindII	GTYRAC	1 cut(s)	512
HindIII	AAGCTT	1 cut(s)	722
HinfI	GANTC	1 cut(s)	752
HpaII	CCGG	1 cut(s)	367
Hpy166II	GTNNAC	3 cut(s)	156, 512, 704
Hpy188I	TCNGA	2 cut(s)	557, 673
Hpy188III	TCNNGA	1 cut(s)	762
Hpy8I	GTNNAC	3 cut(s)	156, 512, 704
HpyAV	CCTTC	1 cut(s)	185
HpyCH4IV	ACGT	2 cut(s)	25, 693
HpyCH4V	TGCA	7 cut(s)	54, 356, 372, 381, 419, 652, 711
HpyF10VI	GCNNNNNNNGC	3 cut(s)	280, 311, 378
HpyF3I	CTNAG	3 cut(s)	102, 279, 395
HpySE526I	ACGT	2 cut(s)	25, 693
Hsp92II	CATG	5 cut(s)	19, 71, 113, 321, 748
HspAI	GCGC	2 cut(s)	107, 598
Kzo9I	GATC	2 cut(s)	385, 531
LpnPI	CCDG	9 cut(s)	34, 150, 153, 283, 287, 373, 380, 638, 747
Lsp1109I	GCAGC	4 cut(s)	326, 368, 508, 562
LweI	GCATC	3 cut(s)	261, 406, 639
MaeI	CTAG	1 cut(s)	422
MaeII	ACGT	2 cut(s)	25, 693
MaeIII	GTNAC	2 cut(s)	97, 753
MalI	GATC	2 cut(s)	387, 533
MboI	GATC	2 cut(s)	385, 531
MboII	GAAGA	3 cut(s)	188, 200, 761
MhlI	GDGCHC	4 cut(s)	23, 67, 285, 403
MluCI	AATT	4 cut(s)	10, 144, 257, 291
MlyI	GAGTC	1 cut(s)	761
MmeI	TCCRAC	1 cut(s)	535
MnlI	CCTC	8 cut(s)	22, 97, 117, 170, 241, 340, 443, 490
MroXI	GAANNNNTTC	1 cut(s)	195
MseI	TTAA	3 cut(s)	212, 243, 443
MslI	CAYNNNNRTG	1 cut(s)	243
MspI	CCGG	1 cut(s)	367
MwoI	GCNNNNNNNGC	3 cut(s)	280, 311, 378
NcoI	CCATGG	1 cut(s)	15
NdeI	CATATG	1 cut(s)	517
NdeII	GATC	2 cut(s)	385, 531
NlaIII	CATG	5 cut(s)	19, 71, 113, 321, 748
NmuCI	GTSAC	1 cut(s)	753
NspI	RCATGY	2 cut(s)	113, 321
PaeI	GCATGC	1 cut(s)	113
PdmI	GAANNNNTTC	1 cut(s)	195
PflMI	CCANNNNNTGG	1 cut(s)	409
PinAI	ACCGGT	1 cut(s)	366
PkrI	GCNGC	4 cut(s)	316, 358, 523, 577
PleI	GAGTC	1 cut(s)	760
PmaCI	CACGTG	1 cut(s)	26
PmlI	CACGTG	1 cut(s)	26
PpsI	GAGTC	1 cut(s)	760
Ppu21I	YACGTR	2 cut(s)	26, 694
PsiI	TTATAA	2 cut(s)	476, 582
PspCI	CACGTG	1 cut(s)	26
RsaI	GTAC	3 cut(s)	80, 692, 738
RsaNI	GTAC	3 cut(s)	79, 691, 737
RseI	CAYNNNNRTG	1 cut(s)	243
SaqAI	TTAA	3 cut(s)	212, 243, 443
SatI	GCNGC	4 cut(s)	315, 357, 522, 576
Sau3AI	GATC	2 cut(s)	385, 531
SchI	GAGTC	1 cut(s)	761
SduI	GDGCHC	4 cut(s)	23, 67, 285, 403
SetI	ASST	8 cut(s)	28, 53, 181, 196, 482, 506, 696, 726
SfaNI	GCATC	3 cut(s)	261, 406, 639
SgrAI	CRCCGGYG	1 cut(s)	366
SmiMI	CAYNNNNRTG	1 cut(s)	243
SnaBI	TACGTA	1 cut(s)	694
SphI	GCATGC	1 cut(s)	113
Sse9I	AATT	4 cut(s)	10, 144, 257, 291
SsiI	CCGC	2 cut(s)	113, 413
SspMI	CTAG	1 cut(s)	422
StyI	CCWWGG	1 cut(s)	15
TaiI	ACGT	2 cut(s)	28, 696
TaqI	TCGA	1 cut(s)	448
TasI	AATT	4 cut(s)	10, 144, 257, 291
TatI	WGTACW	1 cut(s)	736
Tru1I	TTAA	3 cut(s)	212, 243, 443
Tru9I	TTAA	3 cut(s)	212, 243, 443
TscAI	CASTG	1 cut(s)	706
TseFI	GTSAC	1 cut(s)	753
TseI	GCWGC	4 cut(s)	314, 356, 521, 575
Tsp45I	GTSAC	1 cut(s)	753
TspDTI	ATGAA	6 cut(s)	188, 230, 250, 303, 345, 503
TspRI	CASTG	1 cut(s)	706
Van91I	CCANNNNNTGG	1 cut(s)	409
XapI	RAATTY	1 cut(s)	257
XceI	RCATGY	2 cut(s)	113, 321
XmiI	GTMKAC	1 cut(s)	155
XmnI	GAANNNNTTC	1 cut(s)	195
XspI	CTAG	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.