Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001315

Physical Location & Seq

Genomic Coordinates Forward (+)

26900767 .. 26901231

Gene Structure 465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG286400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGTCGAGTAATGGTTGTGATCCAAATGTTGATACTTATACCAAATTGATTGCTGGTTTCCTTAAAGCCCGGAAAGTGGCAGATGCACTGGAGATGTTTGATGAGATATTAAGTCGAGGATTTGTTCCTACGATGGGGACTATAACCTCTTTTATGGAAGCCTTATGTAGCTATGGTCCACCATATGCTGCTATGATGATCTACCAGAAAGCAAGAAAGGAATGTGGTTATGCTTCTGATATCGAAGTTTATGAGTATGCAATCAGTGGACTTTGCAACATAGGGCAGCTTGAAAATGCTGTACTTGTCATGGAAGAGTCTCTACAAAAAGGTTTTTGCCCAAGCATACCTATAGCAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

120

Amino Acids

13.13

Weight (kDa)

4.59

Isoelectric Point (pI)

40.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	4 - 35	2.6e-07	PPR repeat
PPR_2	PF13041	8 - 56	7.2e-11	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43820
fragaria_vesca	FvH4_5g24880 FvH4_5g25350 FvH4_5g25520
malus_domestica	MD16G1284000.v1.1
prunus_persica	Prupe.5G009500_v2.0.a1
pyrus_communis	pycom16g26010
rosa_chinensis	RchiOBHm_Chr6g0271861 RchiOBHm_Chr6g0271871 RchiOBHm_Chr6g0271981 RchiOBHm_Chr7g0215761 RchiOBHm_Chr7g0215771 RchiOBHm_Chr7g0215901 RchiOBHm_Chr7g0217231 RchiOBHm_Chr7g0219831
rosa_laevigata	RLG00000002611 RLG00000002625 RLG00000013566
rosa_multiflora	Rmu_sc0000055.1_g000008 Rmu_sc0000055.1_g000009 Rmu_sc0000516.1_g000005 Rmu_sc0000516.1_g000006 Rmu_sc0004379.1_g000016 Rmu_sc0006240.1_g000009 Rmu_sc0007857.1_g000006 Rmu_sc0016364.1_g000002 Rmu_sc0016407.1_g000001 Rmu_sc0023052.1_g000001
rosa_roxburghii	Rroxscaffold_2G00114980 Rroxscaffold_3G00243850 Rroxscaffold_5G00342010 Rroxscaffold_7G00186190
rosa_rugosa	Rorug06G0064100 Rorug07G0156600 Rorug07G0157900 Rorug07G0158000
rosa_samantha	Rh1BG116200 Rh6AG181800 Rh6BG185400 Rh6CG182900 Rh6CG183200 Rh6DG174300 Rh6DG174600 Rh7AG294600 Rh7AG306400 Rh7AG306500 Rh7BG286400 Rh7CG314600 Rh7CG325500 Rh7DG296900 Rh7DG299400 Rh7DG306200
rosa_wichuraiana	Rw6G015640 Rw7G026030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	14
AfaI	GTAC	1 cut(s)	303
AfiI	CCNNNNNNNGG	2 cut(s)	76, 134
AgsI	TTSAA	1 cut(s)	293
AluBI	AGCT	2 cut(s)	171, 289
AluI	AGCT	2 cut(s)	171, 289
Alw26I	GTCTC	1 cut(s)	324
AlwI	GGATC	1 cut(s)	14
ApeKI	GCWGC	2 cut(s)	188, 286
AspS9I	GGNCC	1 cut(s)	176
AsuC2I	CCSGG	1 cut(s)	70
AvaII	GGWCC	1 cut(s)	176
BarI	GAAGNNNNNNTAC	2 cut(s)	306, 338
BbvI	GCAGC	2 cut(s)	175, 298
BccI	CCATC	1 cut(s)	127
BcnI	CCSGG	1 cut(s)	70
BcoDI	GTCTC	1 cut(s)	324
BfmI	CTRYAG	1 cut(s)	351
BisI	GCNGC	2 cut(s)	189, 287
BlsI	GCNGC	2 cut(s)	190, 288
Bme1390I	CCNGG	1 cut(s)	70
Bme18I	GGWCC	1 cut(s)	176
BmgT120I	GGNCC	1 cut(s)	176
BmrFI	CCNGG	1 cut(s)	70
BmsI	GCATC	1 cut(s)	73
BpmI	CTGGAG	1 cut(s)	110
BpuMI	CCSGG	1 cut(s)	70
Bsc4I	CCNNNNNNNGG	2 cut(s)	76, 134
Bse1I	ACTGG	1 cut(s)	93
BseLI	CCNNNNNNNGG	2 cut(s)	76, 134
BseNI	ACTGG	1 cut(s)	93
BseXI	GCAGC	2 cut(s)	175, 298
BsiSI	CCGG	1 cut(s)	70
BslFI	GGGAC	1 cut(s)	151
BslI	CCNNNNNNNGG	2 cut(s)	76, 134
BsmAI	GTCTC	1 cut(s)	324
BsmFI	GGGAC	1 cut(s)	151
Bsp143I	GATC	2 cut(s)	19, 198
BspPI	GGATC	1 cut(s)	14
BsrI	ACTGG	1 cut(s)	93
BssMI	GATC	2 cut(s)	19, 198
Bst6I	CTCTTC	1 cut(s)	309
BstKTI	GATC	2 cut(s)	22, 201
BstMAI	GTCTC	1 cut(s)	324
BstMBI	GATC	2 cut(s)	19, 198
BstSCI	CCNGG	1 cut(s)	68
BstSFI	CTRYAG	1 cut(s)	351
BstV1I	GCAGC	2 cut(s)	175, 298
BtsIMutI	CAGTG	2 cut(s)	86, 271
Cfr13I	GGNCC	1 cut(s)	176
Csp6I	GTAC	1 cut(s)	302
CviAII	CATG	1 cut(s)	310
CviJI	RGCY	4 cut(s)	68, 161, 171, 289
CviKI_1	RGCY	4 cut(s)	68, 161, 171, 289
CviQI	GTAC	1 cut(s)	302
DpnI	GATC	2 cut(s)	21, 200
DpnII	GATC	2 cut(s)	19, 198
Eam1104I	CTCTTC	1 cut(s)	309
EarI	CTCTTC	1 cut(s)	309
Eco32I	GATATC	1 cut(s)	241
Eco47I	GGWCC	1 cut(s)	176
EcoRV	GATATC	1 cut(s)	241
FaeI	CATG	1 cut(s)	313
FaqI	GGGAC	1 cut(s)	151
FatI	CATG	1 cut(s)	309
FauNDI	CATATG	1 cut(s)	184
Fnu4HI	GCNGC	2 cut(s)	189, 287
Fsp4HI	GCNGC	2 cut(s)	189, 287
GluI	GCNGC	2 cut(s)	189, 287
GsuI	CTGGAG	1 cut(s)	110
HapII	CCGG	1 cut(s)	70
Hin1II	CATG	1 cut(s)	313
HinfI	GANTC	1 cut(s)	317
HpaII	CCGG	1 cut(s)	70
Hpy166II	GTNNAC	2 cut(s)	179, 269
Hpy188I	TCNGA	1 cut(s)	238
Hpy8I	GTNNAC	2 cut(s)	179, 269
HpyCH4V	TGCA	3 cut(s)	86, 260, 276
Hsp92II	CATG	1 cut(s)	313
Kzo9I	GATC	2 cut(s)	19, 198
LpnPI	CCDG	4 cut(s)	39, 74, 83, 218
Lsp1109I	GCAGC	2 cut(s)	175, 298
LweI	GCATC	1 cut(s)	73
MalI	GATC	2 cut(s)	21, 200
MboI	GATC	2 cut(s)	19, 198
MboII	GAAGA	1 cut(s)	326
MluCI	AATT	1 cut(s)	44
MlyI	GAGTC	1 cut(s)	326
MnlI	CCTC	2 cut(s)	110, 157
MseI	TTAA	2 cut(s)	63, 110
MspI	CCGG	1 cut(s)	70
MspR9I	CCNGG	1 cut(s)	70
NciI	CCSGG	1 cut(s)	70
NdeI	CATATG	1 cut(s)	184
NdeII	GATC	2 cut(s)	19, 198
NlaIII	CATG	1 cut(s)	313
PkrI	GCNGC	2 cut(s)	190, 288
PleI	GAGTC	1 cut(s)	325
PpsI	GAGTC	1 cut(s)	325
PspPI	GGNCC	1 cut(s)	176
RsaI	GTAC	1 cut(s)	303
RsaNI	GTAC	1 cut(s)	302
SaqAI	TTAA	2 cut(s)	63, 110
SatI	GCNGC	2 cut(s)	189, 287
Sau3AI	GATC	2 cut(s)	19, 198
Sau96I	GGNCC	1 cut(s)	176
SchI	GAGTC	1 cut(s)	326
ScrFI	CCNGG	1 cut(s)	70
SetI	ASST	5 cut(s)	149, 173, 291, 334, 352
SfaNI	GCATC	1 cut(s)	73
SfcI	CTRYAG	1 cut(s)	351
SinI	GGWCC	1 cut(s)	176
Sse9I	AATT	1 cut(s)	44
StyD4I	CCNGG	1 cut(s)	68
TaqI	TCGA	3 cut(s)	5, 115, 243
TasI	AATT	1 cut(s)	44
TatI	WGTACW	1 cut(s)	301
Tru1I	TTAA	2 cut(s)	63, 110
Tru9I	TTAA	2 cut(s)	63, 110
TscAI	CASTG	2 cut(s)	93, 271
TseI	GCWGC	2 cut(s)	188, 286
TspRI	CASTG	2 cut(s)	93, 271
VpaK11BI	GGWCC	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.