Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001315

Physical Location & Seq

Genomic Coordinates Forward (+)

35716217 .. 35734239

Gene Structure 18023 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG306200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGCTTGAGCTGAGTGTGGCTCTTATGTTTGGTGGACAAATGAATATTGTCAAGATTGCAAAGAAACTTAATGGTGAGCAAAATGCTAGCTTTGGTTTCGACATGGCTGCAGACATAAAGGTTGATGCTTCTGCAGCATCATACTTCAACACATTTGGTAAAGCTTTGTTCATCATCAGCAAGGTCATCAGATCCCTTATTTTGGACATTGTTGGCGAACTAAGACAGAGTAGAGACAAAGAAAGCATAGAGATGAAGAAGGGATTGAAAGTTTTGAATGACATGAGGAGTCGAGACATACGTCTCGATTTGGAGACTGTGTCGATTGTGATGGATAGTTTTGTGAGGGCTGGACATGTCTCGAAAGCAATACAAGTTATCCGAAACTCGGCAGAGTTCGGGTTGGATTGCGATACTGAGTGTGTGAATGTGCTTCTGCAGTGTCTGTGTCGGCGGTCTCATGTAGTGGCTACAAATTCGTTTCTTAATTCAGTGAAGGGGAAAGTGCGATTCAATGGCACTACGTATAACATTGTAATTGGTGGGTGGTCAAAATATGGTAGAGTTGGTGAGATGGTGAGGACTTTGGAAGCAATGGTAGCAGATGGGTTTAGTCCTGATAGTGCAACTTTCAGTTACATTCTTGAGGGTCTAGGAAGAGCTGATCGGATTGACGATGCAGTTGAGATTTTTGAGAGCATGAAGGGGAAAGGTTGCGTGCCAGACACCATTACATACAATGCAATGATCTCTAACTTTATCTCTGTTGCGAATATTGATGAATGTGTAAACTACTTCAAGAGTATGTCGAGTAATGCTTGCGATCCAAATGTTGATACTTATACCAAATTGATTGCTGGTTTCCTTAAAGCTCGGAAAGCGGCGGATGCACTGGAGATGTTTGATGAGATGTTAAGTCGAGGATTTGTTCCTACTGCGGGGACTATAACCTCTTTTATGGAACCCTTATGTAGCTATGGTCCACCATATGCTGCTATGATGATCTACCAGAAAGCAAGAAAGGTTGAGTCATTTGACAGGACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

348

Amino Acids

38.42

Weight (kDa)

6.75

Isoelectric Point (pI)

29.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	168 - 269	2.2e-06	Fungal tetratrico peptide repeats
PPR_2	PF13041	175 - 219	1.7e-08	PPR repeat family
PPR_3	PF13812	196 - 252	3.4e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	202 - 235	1.7e-06	PPR repeat
PPR_2	PF13041	214 - 253	1.2e-09	PPR repeat family
PPR_long	PF17177	222 - 321	3.5e-08	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	241 - 290	3.8e-11	PPR repeat family
PPR_2	PF13041	276 - 324	3.9e-10	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43820
fragaria_vesca	FvH4_5g24880 FvH4_5g25350 FvH4_5g25520
malus_domestica	MD16G1284000.v1.1
prunus_persica	Prupe.5G009500_v2.0.a1
pyrus_communis	pycom16g26010
rosa_chinensis	RchiOBHm_Chr6g0271861 RchiOBHm_Chr6g0271871 RchiOBHm_Chr6g0271981 RchiOBHm_Chr7g0215761 RchiOBHm_Chr7g0215771 RchiOBHm_Chr7g0215901 RchiOBHm_Chr7g0217231 RchiOBHm_Chr7g0219831
rosa_laevigata	RLG00000002611 RLG00000002625 RLG00000013566
rosa_multiflora	Rmu_sc0000055.1_g000008 Rmu_sc0000055.1_g000009 Rmu_sc0000516.1_g000005 Rmu_sc0000516.1_g000006 Rmu_sc0004379.1_g000016 Rmu_sc0006240.1_g000009 Rmu_sc0007857.1_g000006 Rmu_sc0016364.1_g000002 Rmu_sc0016407.1_g000001 Rmu_sc0023052.1_g000001
rosa_roxburghii	Rroxscaffold_2G00114980 Rroxscaffold_3G00243850 Rroxscaffold_5G00342010 Rroxscaffold_7G00186190
rosa_rugosa	Rorug06G0064100 Rorug07G0156600 Rorug07G0157900 Rorug07G0158000
rosa_samantha	Rh1BG116200 Rh6AG181800 Rh6BG185400 Rh6CG182900 Rh6CG183200 Rh6DG174300 Rh6DG174600 Rh7AG294600 Rh7AG306400 Rh7AG306500 Rh7BG286400 Rh7CG314600 Rh7CG325500 Rh7DG296900 Rh7DG299400 Rh7DG306200
rosa_wichuraiana	Rw6G015640 Rw7G026030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	454, 881, 884, 938
AclWI	GGATC	2 cut(s)	186, 818
AcsI	RAATTY	1 cut(s)	475
AfiI	CCNNNNNNNGG	3 cut(s)	202, 388, 938
AflIII	ACRYGT	1 cut(s)	355
AgsI	TTSAA	5 cut(s)	148, 268, 277, 514, 799
AluBI	AGCT	6 cut(s)	10, 90, 164, 662, 872, 975
AluI	AGCT	6 cut(s)	10, 90, 164, 662, 872, 975
Alw26I	GTCTC	6 cut(s)	228, 288, 308, 308, 364, 462
AlwI	GGATC	2 cut(s)	186, 818
AlwNI	CAGNNNCTG	1 cut(s)	445
ApeKI	GCWGC	3 cut(s)	107, 134, 992
ApoI	RAATTY	1 cut(s)	475
AspS9I	GGNCC	1 cut(s)	980
AsuHPI	GGTGA	3 cut(s)	86, 581, 589
AsuNHI	GCTAGC	1 cut(s)	86
AvaII	GGWCC	1 cut(s)	980
BbvI	GCAGC	3 cut(s)	94, 146, 979
BccI	CCATC	3 cut(s)	325, 568, 599
BcgI	CGANNNNNNTGC	2 cut(s)	89, 123
BcoDI	GTCTC	6 cut(s)	228, 288, 308, 308, 364, 462
BfaI	CTAG	2 cut(s)	87, 653
BfmI	CTRYAG	3 cut(s)	108, 132, 437
BisI	GCNGC	4 cut(s)	108, 135, 882, 993
BlsI	GCNGC	4 cut(s)	109, 136, 883, 994
Bme18I	GGWCC	1 cut(s)	980
BmgT120I	GGNCC	1 cut(s)	980
BmiI	GGNNCC	1 cut(s)	963
BmsI	GCATC	4 cut(s)	115, 146, 667, 877
BmtI	GCTAGC	1 cut(s)	90
BoxI	GACNNNNGTC	1 cut(s)	300
BplI	GAGNNNNNCTC	1 cut(s)	36
BpmI	CTGGAG	1 cut(s)	914
BpuEI	CTTGAG	2 cut(s)	26, 665
BsaAI	YACGTR	1 cut(s)	525
BsaI	GGTCTC	1 cut(s)	462
BsaXI	ACNNNNNCTCC	2 cut(s)	305, 335
Bsc4I	CCNNNNNNNGG	3 cut(s)	202, 388, 938
Bse1I	ACTGG	1 cut(s)	897
Bse3DI	GCAATG	2 cut(s)	600, 750
BseGI	GGATG	1 cut(s)	892
BseLI	CCNNNNNNNGG	3 cut(s)	202, 388, 938
BseMI	GCAATG	2 cut(s)	600, 750
BseMII	CTCAG	1 cut(s)	408
BseNI	ACTGG	1 cut(s)	897
BseRI	GAGGAG	1 cut(s)	301
BseXI	GCAGC	3 cut(s)	94, 146, 979
BslFI	GGGAC	1 cut(s)	955
BslI	CCNNNNNNNGG	3 cut(s)	202, 388, 938
BsmAI	GTCTC	6 cut(s)	228, 288, 308, 308, 364, 462
BsmBI	CGTCTC	1 cut(s)	308
BsmFI	GGGAC	1 cut(s)	955
Bso31I	GGTCTC	1 cut(s)	462
Bsp143I	GATC	5 cut(s)	191, 664, 747, 823, 1002
BspACI	CCGC	4 cut(s)	454, 881, 884, 938
BspCNI	CTCAG	1 cut(s)	409
BspLI	GGNNCC	1 cut(s)	963
BspMAI	CTGCAG	3 cut(s)	112, 136, 441
BspOI	GCTAGC	1 cut(s)	90
BspPI	GGATC	2 cut(s)	186, 818
BspQI	GCTCTTC	1 cut(s)	652
BspTNI	GGTCTC	1 cut(s)	462
BsrDI	GCAATG	2 cut(s)	600, 750
BsrI	ACTGG	1 cut(s)	897
BssMI	GATC	5 cut(s)	191, 664, 747, 823, 1002
Bst4CI	ACNGT	1 cut(s)	319
Bst6I	CTCTTC	1 cut(s)	652
BstBAI	YACGTR	1 cut(s)	525
BstC8I	GCNNGC	3 cut(s)	88, 719, 820
BstDEI	CTNAG	3 cut(s)	11, 221, 417
BstF5I	GGATG	1 cut(s)	892
BstKTI	GATC	5 cut(s)	194, 667, 750, 826, 1005
BstMAI	GTCTC	6 cut(s)	228, 288, 308, 308, 364, 462
BstMBI	GATC	5 cut(s)	191, 664, 747, 823, 1002
BstMWI	GCNNNNNNNGC	4 cut(s)	134, 599, 878, 887
BstNSI	RCATGY	1 cut(s)	359
BstPAI	GACNNNNGTC	1 cut(s)	300
BstSFI	CTRYAG	3 cut(s)	108, 132, 437
BstSNI	TACGTA	1 cut(s)	525
BstV1I	GCAGC	3 cut(s)	94, 146, 979
BstX2I	RGATCY	1 cut(s)	191
BstYI	RGATCY	1 cut(s)	191
BtsCI	GGATG	1 cut(s)	892
BtsI	GCAGTG	1 cut(s)	446
BtsIMutI	CAGTG	3 cut(s)	446, 498, 890
Cac8I	GCNNGC	3 cut(s)	88, 719, 820
CaiI	CAGNNNCTG	1 cut(s)	445
Cfr13I	GGNCC	1 cut(s)	980
CviAII	CATG	5 cut(s)	103, 283, 356, 461, 700
DdeI	CTNAG	3 cut(s)	11, 221, 417
DpnI	GATC	5 cut(s)	193, 666, 749, 825, 1004
DpnII	GATC	5 cut(s)	191, 664, 747, 823, 1002
Eam1104I	CTCTTC	1 cut(s)	652
EarI	CTCTTC	1 cut(s)	652
EciI	GGCGGA	1 cut(s)	899
Eco105I	TACGTA	1 cut(s)	525
Eco31I	GGTCTC	1 cut(s)	462
Eco47I	GGWCC	1 cut(s)	980
Esp3I	CGTCTC	1 cut(s)	308
FaeI	CATG	5 cut(s)	106, 286, 359, 464, 703
FaqI	GGGAC	1 cut(s)	955
FatI	CATG	5 cut(s)	102, 282, 355, 460, 699
FauI	CCCGC	1 cut(s)	931
FauNDI	CATATG	1 cut(s)	988
Fnu4HI	GCNGC	4 cut(s)	108, 135, 882, 993
FokI	GGATG	1 cut(s)	899
Fsp4HI	GCNGC	4 cut(s)	108, 135, 882, 993
FspBI	CTAG	2 cut(s)	87, 653
GluI	GCNGC	4 cut(s)	108, 135, 882, 993
GsuI	CTGGAG	1 cut(s)	914
Hin1II	CATG	5 cut(s)	106, 286, 359, 464, 703
HindIII	AAGCTT	1 cut(s)	162
HinfI	GANTC	3 cut(s)	289, 510, 1028
HphI	GGTGA	3 cut(s)	86, 581, 589
Hpy166II	GTNNAC	3 cut(s)	35, 790, 983
Hpy188I	TCNGA	4 cut(s)	191, 383, 669, 876
Hpy188III	TCNNGA	7 cut(s)	52, 293, 305, 361, 617, 644, 799
Hpy8I	GTNNAC	3 cut(s)	35, 790, 983
HpyAV	CCTTC	3 cut(s)	253, 490, 697
HpyCH4III	ACNGT	1 cut(s)	319
HpyCH4IV	ACGT	2 cut(s)	301, 524
HpyCH4V	TGCA	8 cut(s)	59, 110, 134, 439, 626, 680, 743, 890
HpyF10VI	GCNNNNNNNGC	4 cut(s)	134, 599, 878, 887
HpyF3I	CTNAG	3 cut(s)	11, 221, 417
HpySE526I	ACGT	2 cut(s)	301, 524
Hsp92II	CATG	5 cut(s)	106, 286, 359, 464, 703
Kzo9I	GATC	5 cut(s)	191, 664, 747, 823, 1002
LguI	GCTCTTC	1 cut(s)	652
LpnPI	CCDG	7 cut(s)	336, 630, 735, 843, 878, 1022, 1024
Lsp1109I	GCAGC	3 cut(s)	94, 146, 979
LweI	GCATC	4 cut(s)	115, 146, 667, 877
MaeI	CTAG	2 cut(s)	87, 653
MaeII	ACGT	2 cut(s)	301, 524
MaeIII	GTNAC	1 cut(s)	635
MalI	GATC	5 cut(s)	193, 666, 749, 825, 1004
MboI	GATC	5 cut(s)	191, 664, 747, 823, 1002
MboII	GAAGA	2 cut(s)	268, 669
MflI	RGATCY	1 cut(s)	191
MluCI	AATT	4 cut(s)	475, 487, 537, 848
MlyI	GAGTC	2 cut(s)	298, 1037
MmeI	TCCRAC	1 cut(s)	384
MnlI	CCTC	6 cut(s)	279, 339, 573, 640, 914, 961
MseI	TTAA	5 cut(s)	69, 486, 867, 914, 1045
MslI	CAYNNNNRTG	1 cut(s)	251
MwoI	GCNNNNNNNGC	4 cut(s)	134, 599, 878, 887
NdeI	CATATG	1 cut(s)	988
NdeII	GATC	5 cut(s)	191, 664, 747, 823, 1002
NheI	GCTAGC	1 cut(s)	86
NlaIII	CATG	5 cut(s)	106, 286, 359, 464, 703
NlaIV	GGNNCC	1 cut(s)	963
NmeAIII	GCCGAG	1 cut(s)	368
NspI	RCATGY	1 cut(s)	359
PciI	ACATGT	1 cut(s)	355
PciSI	GCTCTTC	1 cut(s)	652
PcsI	WCGNNNNNNNCGW	1 cut(s)	298
PfeI	GAWTC	1 cut(s)	510
PflFI	GACNNNGTC	1 cut(s)	319
PkrI	GCNGC	4 cut(s)	109, 136, 883, 994
PleI	GAGTC	2 cut(s)	297, 1036
PpsI	GAGTC	2 cut(s)	297, 1036
Ppu21I	YACGTR	1 cut(s)	525
PscI	ACATGT	1 cut(s)	355
PshAI	GACNNNNGTC	1 cut(s)	300
PspN4I	GGNNCC	1 cut(s)	963
PspPI	GGNCC	1 cut(s)	980
PstI	CTGCAG	3 cut(s)	112, 136, 441
PstNI	CAGNNNCTG	1 cut(s)	445
PsuI	RGATCY	1 cut(s)	191
PsyI	GACNNNGTC	1 cut(s)	319
RseI	CAYNNNNRTG	1 cut(s)	251
SapI	GCTCTTC	1 cut(s)	652
SaqAI	TTAA	5 cut(s)	69, 486, 867, 914, 1045
SatI	GCNGC	4 cut(s)	108, 135, 882, 993
Sau3AI	GATC	5 cut(s)	191, 664, 747, 823, 1002
Sau96I	GGNCC	1 cut(s)	980
SchI	GAGTC	2 cut(s)	298, 1037
SfaNI	GCATC	4 cut(s)	115, 146, 667, 877
SfcI	CTRYAG	3 cut(s)	108, 132, 437
SinI	GGWCC	1 cut(s)	980
SmiMI	CAYNNNNRTG	1 cut(s)	251
SmlI	CTYRAG	2 cut(s)	5, 644
SmoI	CTYRAG	2 cut(s)	5, 644
SnaBI	TACGTA	1 cut(s)	525
Sse9I	AATT	4 cut(s)	475, 487, 537, 848
SsiI	CCGC	4 cut(s)	454, 881, 884, 938
SspI	AATATT	2 cut(s)	46, 775
SspMI	CTAG	2 cut(s)	87, 653
TaaI	ACNGT	1 cut(s)	319
TaiI	ACGT	2 cut(s)	304, 527
TaqI	TCGA	7 cut(s)	99, 292, 306, 323, 362, 809, 919
TasI	AATT	4 cut(s)	475, 487, 537, 848
TauI	GCSGC	1 cut(s)	884
TfiI	GAWTC	1 cut(s)	510
Tru1I	TTAA	5 cut(s)	69, 486, 867, 914, 1045
Tru9I	TTAA	5 cut(s)	69, 486, 867, 914, 1045
TscAI	CASTG	3 cut(s)	446, 498, 897
TseI	GCWGC	3 cut(s)	107, 134, 992
TspDTI	ATGAA	5 cut(s)	56, 160, 269, 716, 795
TspRI	CASTG	3 cut(s)	446, 498, 897
Tth111I	GACNNNGTC	1 cut(s)	319
VpaK11BI	GGWCC	1 cut(s)	980
XapI	RAATTY	1 cut(s)	475
XceI	RCATGY	1 cut(s)	359
XspI	CTAG	2 cut(s)	87, 653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.