Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001315

Physical Location & Seq

Genomic Coordinates Forward (+)

32936971 .. 32938395

Gene Structure 1425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G026030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1425 bp

ATGGTAGAATCTGTTAGGGCTGTGGATGGGTTTTTAATGCCCAACGAGAAATTACGTGGGGTTTTTCTTCAGAAATTGAAGGGTATAACTGTAATTGAGCATGCACTCGACAATGTTGGTGTGGATTTGAGCGTTGATGTTGTTGCACAAGTAGTGAATAGAGGTTGTTTAGGCGGTGAAGCAATGCTTGTGTTTTTTAATTGGGCGATTAAGAAGCCAAATGTAGCTAAGCATGTTCATACATACCATATAATCCTCAAAGCATTGGGTAGAAGAAAGTTCTTTAATTATATGATGCAAGTTTTGAATGACATGAGGAGCCGAGACATACGTCTCGATTTGGAGACTGTGTCGATTGTGATGGATAGTTTTGTGAGGGCTGGACATGTCTCGAAAGCAATACAAGTTATCCGAAACTCGGCAGAGTTCGGGTTGGATTGCGATACTGAGTGTGTGAATGTGCTTCTGCAGTGTCTGTGTCGGCGGTCTCATGTAGTGGCTGCAAATTCGTTTCTTAATTCAGTGAAGGGGAAAGTGCGATTCAATGGCACTACGTATAACATTGTAATTGGTGGGTGGTCAAAATATGGTAGAGTTGGTGAGATGGTGAGGACTTTGGAAGCAATGGTAGCAGATGGGTTTAGTCCTGATAGTGCAACTTTCAGTTACATTCTTGAGGGTCTAGGAAGAGCTGATCGGATTGACGATGCAGTTGAGATTTTTGAGAGCATGAAGGGGAAAGGTTGCGTGCCAGACACCATTACATACAATGCAATGATCTCTAACTTTATCTCTGTTGCGAATATTGATGAATGTGTAAACTACTTCAAGAGTATGTCGAGTAATGCTTGCGATCCAAATGTTGATACTTATACCAAATTGATTGCTGGTTTCCTTAAAGCCCGGAAAGCGGCGGATGCACTGGAGATGTTTGATGAGATGTTAAGTCGAGGATTTGTTCCTACTACGGGGACTATAACCTCTTTTATGGAACCCTTATGTAGCTATGGTCCACCATATGCTGCTATGATGATCTACCAGAAAGCAAGAAAGGTCGGATGTAGAATATCATTGACTGCTTATAAGCTATTGCTTATGCGCCTTTCTAGATTTGGTAAATGTGGAATGTTGCTAAACATTTGGGAAGAGATGCAGGAATGTGGTTATGCTTCTGATATCGAAGTTTATGAGTATGTAATCAGTGGACTTTGCAACATTGGGCAGCTTGAAAATGCTGTACTTGTCATGGAAGACTCTCTACGAAAAGGTTTTTGCCCAAGCAGGCTTACCTATAGCAAACTAAGTAACAAACTTCTTGCTTCAAATAAGTTAGAGAGGGCTTATAAGCTATACTTGAAGATTAAAGCTGCTCGTCGTTTTGACAAGATACAGAGAATTTGGCGTGCTAGGGGATGGCATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

474

Amino Acids

53.31

Weight (kDa)

9.04

Isoelectric Point (pI)

31.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	178 - 279	3.8e-06	Fungal tetratrico peptide repeats
PPR_2	PF13041	185 - 229	2.6e-08	PPR repeat family
PPR_3	PF13812	206 - 262	5.4e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	212 - 245	2.5e-06	PPR repeat
PPR_2	PF13041	224 - 263	1.7e-09	PPR repeat family
PPR_long	PF17177	232 - 330	6.1e-08	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	251 - 300	5.9e-11	PPR repeat family
PPR_2	PF13041	286 - 334	6.8e-10	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43820
fragaria_vesca	FvH4_5g24880 FvH4_5g25350 FvH4_5g25520
malus_domestica	MD16G1284000.v1.1
prunus_persica	Prupe.5G009500_v2.0.a1
pyrus_communis	pycom16g26010
rosa_chinensis	RchiOBHm_Chr6g0271861 RchiOBHm_Chr6g0271871 RchiOBHm_Chr6g0271981 RchiOBHm_Chr7g0215761 RchiOBHm_Chr7g0215771 RchiOBHm_Chr7g0215901 RchiOBHm_Chr7g0217231 RchiOBHm_Chr7g0219831
rosa_laevigata	RLG00000002611 RLG00000002625 RLG00000013566
rosa_multiflora	Rmu_sc0000055.1_g000008 Rmu_sc0000055.1_g000009 Rmu_sc0000516.1_g000005 Rmu_sc0000516.1_g000006 Rmu_sc0004379.1_g000016 Rmu_sc0006240.1_g000009 Rmu_sc0007857.1_g000006 Rmu_sc0016364.1_g000002 Rmu_sc0016407.1_g000001 Rmu_sc0023052.1_g000001
rosa_roxburghii	Rroxscaffold_2G00114980 Rroxscaffold_3G00243850 Rroxscaffold_5G00342010 Rroxscaffold_7G00186190
rosa_rugosa	Rorug06G0064100 Rorug07G0156600 Rorug07G0157900 Rorug07G0158000
rosa_samantha	Rh1BG116200 Rh6AG181800 Rh6BG185400 Rh6CG182900 Rh6CG183200 Rh6DG174300 Rh6DG174600 Rh7AG294600 Rh7AG306400 Rh7AG306500 Rh7BG286400 Rh7CG314600 Rh7CG325500 Rh7DG296900 Rh7DG299400 Rh7DG306200
rosa_wichuraiana	Rw6G015640 Rw7G026030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1083, 1344
AciI	CCGC	4 cut(s)	174, 484, 911, 914
AclWI	GGATC	1 cut(s)	848
AcsI	RAATTY	2 cut(s)	505, 1395
AcuI	CTGAAG	1 cut(s)	53
AfaI	GTAC	1 cut(s)	1239
AfiI	CCNNNNNNNGG	3 cut(s)	418, 910, 968
AflIII	ACRYGT	1 cut(s)	385
AgsI	TTSAA	7 cut(s)	79, 307, 544, 829, 1229, 1323, 1357
AluBI	AGCT	7 cut(s)	227, 692, 1005, 1087, 1225, 1348, 1367
AluI	AGCT	7 cut(s)	227, 692, 1005, 1087, 1225, 1348, 1367
Alw26I	GTCTC	5 cut(s)	318, 338, 338, 394, 492
AlwI	GGATC	1 cut(s)	848
AlwNI	CAGNNNCTG	1 cut(s)	475
ApeKI	GCWGC	4 cut(s)	500, 1022, 1222, 1367
ApoI	RAATTY	2 cut(s)	505, 1395
AspLEI	GCGC	1 cut(s)	1101
AspS9I	GGNCC	1 cut(s)	1010
AsuC2I	CCSGG	1 cut(s)	904
AsuHPI	GGTGA	3 cut(s)	188, 611, 619
AvaII	GGWCC	1 cut(s)	1010
BarI	GAAGNNNNNNTAC	2 cut(s)	1242, 1274
BbsI	GAAGAC	1 cut(s)	1257
BbvI	GCAGC	4 cut(s)	487, 1009, 1234, 1354
BccI	CCATC	5 cut(s)	20, 355, 598, 629, 1407
BcnI	CCSGG	1 cut(s)	904
BcoDI	GTCTC	5 cut(s)	318, 338, 338, 394, 492
BfaI	CTAG	3 cut(s)	683, 1107, 1407
BfmI	CTRYAG	2 cut(s)	467, 1291
BisI	GCNGC	5 cut(s)	501, 912, 1023, 1223, 1368
BlpI	GCTNAGC	1 cut(s)	228
BlsI	GCNGC	5 cut(s)	502, 913, 1024, 1224, 1369
Bme1390I	CCNGG	1 cut(s)	904
Bme18I	GGWCC	1 cut(s)	1010
BmgT120I	GGNCC	1 cut(s)	1010
BmiI	GGNNCC	2 cut(s)	320, 993
BmrFI	CCNGG	1 cut(s)	904
BmsI	GCATC	4 cut(s)	285, 697, 907, 1140
BoxI	GACNNNNGTC	1 cut(s)	330
BpiI	GAAGAC	1 cut(s)	1257
BpmI	CTGGAG	1 cut(s)	944
Bpu1102I	GCTNAGC	1 cut(s)	228
BpuEI	CTTGAG	1 cut(s)	695
BpuMI	CCSGG	1 cut(s)	904
BsaAI	YACGTR	2 cut(s)	56, 555
BsaI	GGTCTC	1 cut(s)	492
BsaXI	ACNNNNNCTCC	2 cut(s)	335, 365
Bsc4I	CCNNNNNNNGG	3 cut(s)	418, 910, 968
Bse1I	ACTGG	1 cut(s)	927
Bse3DI	GCAATG	3 cut(s)	189, 630, 780
BseGI	GGATG	4 cut(s)	31, 922, 1064, 1418
BseLI	CCNNNNNNNGG	3 cut(s)	418, 910, 968
BseMI	GCAATG	3 cut(s)	189, 630, 780
BseMII	CTCAG	1 cut(s)	438
BseNI	ACTGG	1 cut(s)	927
BseRI	GAGGAG	1 cut(s)	331
BseXI	GCAGC	4 cut(s)	487, 1009, 1234, 1354
BsiSI	CCGG	1 cut(s)	904
BslFI	GGGAC	1 cut(s)	985
BslI	CCNNNNNNNGG	3 cut(s)	418, 910, 968
BsmAI	GTCTC	5 cut(s)	318, 338, 338, 394, 492
BsmBI	CGTCTC	1 cut(s)	338
BsmFI	GGGAC	1 cut(s)	985
Bso31I	GGTCTC	1 cut(s)	492
Bsp143I	GATC	4 cut(s)	694, 777, 853, 1032
Bsp1720I	GCTNAGC	1 cut(s)	228
BspACI	CCGC	4 cut(s)	174, 484, 911, 914
BspCNI	CTCAG	1 cut(s)	439
BspLI	GGNNCC	2 cut(s)	320, 993
BspMAI	CTGCAG	1 cut(s)	471
BspPI	GGATC	1 cut(s)	848
BspQI	GCTCTTC	1 cut(s)	682
BspTNI	GGTCTC	1 cut(s)	492
BsrDI	GCAATG	3 cut(s)	189, 630, 780
BsrI	ACTGG	1 cut(s)	927
BssMI	GATC	4 cut(s)	694, 777, 853, 1032
Bst4CI	ACNGT	2 cut(s)	91, 349
Bst6I	CTCTTC	2 cut(s)	682, 1140
BstBAI	YACGTR	2 cut(s)	56, 555
BstC8I	GCNNGC	5 cut(s)	102, 749, 850, 1283, 1404
BstDEI	CTNAG	3 cut(s)	228, 447, 1301
BstF5I	GGATG	4 cut(s)	31, 922, 1064, 1418
BstHHI	GCGC	1 cut(s)	1101
BstKTI	GATC	4 cut(s)	697, 780, 856, 1035
BstMAI	GTCTC	5 cut(s)	318, 338, 338, 394, 492
BstMBI	GATC	4 cut(s)	694, 777, 853, 1032
BstMWI	GCNNNNNNNGC	3 cut(s)	629, 908, 917
BstNSI	RCATGY	3 cut(s)	104, 236, 389
BstPAI	GACNNNNGTC	1 cut(s)	330
BstSCI	CCNGG	1 cut(s)	902
BstSFI	CTRYAG	2 cut(s)	467, 1291
BstSNI	TACGTA	1 cut(s)	555
BstV1I	GCAGC	4 cut(s)	487, 1009, 1234, 1354
BstV2I	GAAGAC	1 cut(s)	1257
BtsCI	GGATG	4 cut(s)	31, 922, 1064, 1418
BtsI	GCAGTG	1 cut(s)	476
BtsIMutI	CAGTG	4 cut(s)	476, 528, 920, 1207
Cac8I	GCNNGC	5 cut(s)	102, 749, 850, 1283, 1404
CaiI	CAGNNNCTG	1 cut(s)	475
CfoI	GCGC	1 cut(s)	1101
Cfr13I	GGNCC	1 cut(s)	1010
Csp6I	GTAC	1 cut(s)	1238
CviAII	CATG	7 cut(s)	101, 233, 313, 386, 491, 730, 1246
CviQI	GTAC	1 cut(s)	1238
DdeI	CTNAG	3 cut(s)	228, 447, 1301
DpnI	GATC	4 cut(s)	696, 779, 855, 1034
DpnII	GATC	4 cut(s)	694, 777, 853, 1032
Eam1104I	CTCTTC	2 cut(s)	682, 1140
EarI	CTCTTC	2 cut(s)	682, 1140
EciI	GGCGGA	1 cut(s)	929
Eco105I	TACGTA	1 cut(s)	555
Eco31I	GGTCTC	1 cut(s)	492
Eco32I	GATATC	1 cut(s)	1177
Eco47I	GGWCC	1 cut(s)	1010
Eco57I	CTGAAG	1 cut(s)	53
EcoRV	GATATC	1 cut(s)	1177
Esp3I	CGTCTC	1 cut(s)	338
FaeI	CATG	7 cut(s)	104, 236, 316, 389, 494, 733, 1249
FalI	AAGNNNNNCTT	4 cut(s)	171, 203, 1337, 1369
FaqI	GGGAC	1 cut(s)	985
FatI	CATG	7 cut(s)	100, 232, 312, 385, 490, 729, 1245
FauNDI	CATATG	1 cut(s)	1018
Fnu4HI	GCNGC	5 cut(s)	501, 912, 1023, 1223, 1368
FokI	GGATG	3 cut(s)	38, 929, 1071
Fsp4HI	GCNGC	5 cut(s)	501, 912, 1023, 1223, 1368
FspBI	CTAG	3 cut(s)	683, 1107, 1407
GlaI	GCGC	1 cut(s)	1100
GluI	GCNGC	5 cut(s)	501, 912, 1023, 1223, 1368
GsuI	CTGGAG	1 cut(s)	944
HapII	CCGG	1 cut(s)	904
HhaI	GCGC	1 cut(s)	1101
Hin1II	CATG	7 cut(s)	104, 236, 316, 389, 494, 733, 1249
Hin6I	GCGC	1 cut(s)	1099
HinP1I	GCGC	1 cut(s)	1099
HinfI	GANTC	3 cut(s)	8, 540, 1253
HpaII	CCGG	1 cut(s)	904
HphI	GGTGA	3 cut(s)	188, 611, 619
Hpy166II	GTNNAC	3 cut(s)	820, 1013, 1205
Hpy188I	TCNGA	6 cut(s)	72, 413, 699, 1058, 1174, 1424
Hpy188III	TCNNGA	6 cut(s)	335, 391, 647, 674, 829, 1107
Hpy8I	GTNNAC	3 cut(s)	820, 1013, 1205
Hpy99I	CGWCG	1 cut(s)	1377
HpyAV	CCTTC	3 cut(s)	73, 520, 727
HpyCH4III	ACNGT	2 cut(s)	91, 349
HpyCH4IV	ACGT	3 cut(s)	55, 331, 554
HpyF10VI	GCNNNNNNNGC	3 cut(s)	629, 908, 917
HpyF3I	CTNAG	3 cut(s)	228, 447, 1301
HpySE526I	ACGT	3 cut(s)	55, 331, 554
Hsp92II	CATG	7 cut(s)	104, 236, 316, 389, 494, 733, 1249
HspAI	GCGC	1 cut(s)	1099
Kzo9I	GATC	4 cut(s)	694, 777, 853, 1032
LguI	GCTCTTC	1 cut(s)	682
LmnI	GCTCC	1 cut(s)	318
LpnPI	CCDG	9 cut(s)	366, 660, 765, 873, 908, 917, 1052, 1139, 1267
Lsp1109I	GCAGC	4 cut(s)	487, 1009, 1234, 1354
LweI	GCATC	4 cut(s)	285, 697, 907, 1140
MaeI	CTAG	3 cut(s)	683, 1107, 1407
MaeII	ACGT	3 cut(s)	55, 331, 554
MaeIII	GTNAC	2 cut(s)	665, 1304
MalI	GATC	4 cut(s)	696, 779, 855, 1034
MboI	GATC	4 cut(s)	694, 777, 853, 1032
MboII	GAAGA	6 cut(s)	59, 285, 699, 1157, 1262, 1369
MlyI	GAGTC	1 cut(s)	1247
MmeI	TCCRAC	2 cut(s)	414, 1036
MnlI	CCTC	9 cut(s)	155, 266, 309, 369, 603, 670, 944, 991, 1329
MseI	TTAA	8 cut(s)	35, 198, 210, 285, 516, 897, 944, 1362
MspI	CCGG	1 cut(s)	904
MspR9I	CCNGG	1 cut(s)	904
MwoI	GCNNNNNNNGC	3 cut(s)	629, 908, 917
NciI	CCSGG	1 cut(s)	904
NdeI	CATATG	1 cut(s)	1018
NdeII	GATC	4 cut(s)	694, 777, 853, 1032
NlaIII	CATG	7 cut(s)	104, 236, 316, 389, 494, 733, 1249
NlaIV	GGNNCC	2 cut(s)	320, 993
NmeAIII	GCCGAG	2 cut(s)	347, 398
NspI	RCATGY	3 cut(s)	104, 236, 389
PaeI	GCATGC	1 cut(s)	104
PciI	ACATGT	1 cut(s)	385
PciSI	GCTCTTC	1 cut(s)	682
PfeI	GAWTC	2 cut(s)	8, 540
PflFI	GACNNNGTC	1 cut(s)	349
PkrI	GCNGC	5 cut(s)	502, 913, 1024, 1224, 1369
PleI	GAGTC	1 cut(s)	1247
PpsI	GAGTC	1 cut(s)	1247
Ppu21I	YACGTR	2 cut(s)	56, 555
PscI	ACATGT	1 cut(s)	385
PshAI	GACNNNNGTC	1 cut(s)	330
PsiI	TTATAA	2 cut(s)	1083, 1344
PspN4I	GGNNCC	2 cut(s)	320, 993
PspPI	GGNCC	1 cut(s)	1010
PstI	CTGCAG	1 cut(s)	471
PstNI	CAGNNNCTG	1 cut(s)	475
PsyI	GACNNNGTC	1 cut(s)	349
RsaI	GTAC	1 cut(s)	1239
RsaNI	GTAC	1 cut(s)	1238
SapI	GCTCTTC	1 cut(s)	682
SaqAI	TTAA	8 cut(s)	35, 198, 210, 285, 516, 897, 944, 1362
SatI	GCNGC	5 cut(s)	501, 912, 1023, 1223, 1368
Sau3AI	GATC	4 cut(s)	694, 777, 853, 1032
Sau96I	GGNCC	1 cut(s)	1010
SchI	GAGTC	1 cut(s)	1247
ScrFI	CCNGG	1 cut(s)	904
SfaNI	GCATC	4 cut(s)	285, 697, 907, 1140
SfcI	CTRYAG	2 cut(s)	467, 1291
SinI	GGWCC	1 cut(s)	1010
SmlI	CTYRAG	1 cut(s)	674
SmoI	CTYRAG	1 cut(s)	674
SnaBI	TACGTA	1 cut(s)	555
SphI	GCATGC	1 cut(s)	104
SsiI	CCGC	4 cut(s)	174, 484, 911, 914
SspI	AATATT	1 cut(s)	805
SspMI	CTAG	3 cut(s)	683, 1107, 1407
StyD4I	CCNGG	1 cut(s)	902
TaaI	ACNGT	2 cut(s)	91, 349
TaiI	ACGT	3 cut(s)	58, 334, 557
TaqI	TCGA	7 cut(s)	108, 336, 353, 392, 839, 949, 1179
TatI	WGTACW	1 cut(s)	1237
TauI	GCSGC	1 cut(s)	914
TfiI	GAWTC	2 cut(s)	8, 540
Tru1I	TTAA	8 cut(s)	35, 198, 210, 285, 516, 897, 944, 1362
Tru9I	TTAA	8 cut(s)	35, 198, 210, 285, 516, 897, 944, 1362
TscAI	CASTG	4 cut(s)	476, 528, 927, 1207
TseI	GCWGC	4 cut(s)	500, 1022, 1222, 1367
TspDTI	ATGAA	3 cut(s)	227, 746, 825
TspRI	CASTG	4 cut(s)	476, 528, 927, 1207
Tth111I	GACNNNGTC	1 cut(s)	349
VpaK11BI	GGWCC	1 cut(s)	1010
XapI	RAATTY	2 cut(s)	505, 1395
XbaI	TCTAGA	1 cut(s)	1106
XceI	RCATGY	3 cut(s)	104, 236, 389
XspI	CTAG	3 cut(s)	683, 1107, 1407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.