Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000055.1

Orthogroup ID

OG0001315

Physical Location & Seq

Genomic Coordinates Reverse (-)

74044 .. 74871

Gene Structure 828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000055.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

atgcccgatgagaaattacgtggggtttttcttcagaaattgaagggtatagctgtaatcgagcatgcgctcgataatgttggtgtggatttgagcgttgatgttgttgcacaagtagtgaatagaggttgtttaggcgctgaagcaatgcttgtgttttttaattgggcgattaagaagccaaatgtagctaagcatgttcatacataccatataaacctcaaagcattgggtagaagaaagttctttaattatatgatgcaagttttgaatgacatgaggacccgagacatacgtctcgatttggagactgtgtcgattgtgatggatagttttgtgagggctggacatgtctcgaaagcaatacaagttatccgaaactcggcaaagttcgggttggattgcgatactgagtgtgtgaatgtgcctctacagtgtctgtgtcggcggtctcatgtagtggctgcaaattcgtttcttaattatgtgaaggggaaattgcgattcaatggcacaatgtataacattgttattggtgggtggtcgaaatatggtagagttggtgagatggagaggactttggaagcaatggtagcagatgggtttagtcctgatagtgcaactttcagttacattcttgagggtctaggaagagctgatcggattgacgatgcagttgagatttttgagagcataaaggggaaaggttgcgtgccagacaccattacatacaatgcaatgatctctaactttatctctgttgcgaatattgatgaatgtgtaaactacttcaagagtatgtcgagtaatgcttgcgatccaaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

275

Amino Acids

30.65

Weight (kDa)

8.07

Isoelectric Point (pI)

31.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43820
fragaria_vesca	FvH4_5g24880 FvH4_5g25350 FvH4_5g25520
malus_domestica	MD16G1284000.v1.1
prunus_persica	Prupe.5G009500_v2.0.a1
pyrus_communis	pycom16g26010
rosa_chinensis	RchiOBHm_Chr6g0271861 RchiOBHm_Chr6g0271871 RchiOBHm_Chr6g0271981 RchiOBHm_Chr7g0215761 RchiOBHm_Chr7g0215771 RchiOBHm_Chr7g0215901 RchiOBHm_Chr7g0217231 RchiOBHm_Chr7g0219831
rosa_laevigata	RLG00000002611 RLG00000002625 RLG00000013566
rosa_multiflora	Rmu_sc0000055.1_g000008 Rmu_sc0000055.1_g000009 Rmu_sc0000516.1_g000005 Rmu_sc0000516.1_g000006 Rmu_sc0004379.1_g000016 Rmu_sc0006240.1_g000009 Rmu_sc0007857.1_g000006 Rmu_sc0016364.1_g000002 Rmu_sc0016407.1_g000001 Rmu_sc0023052.1_g000001
rosa_roxburghii	Rroxscaffold_2G00114980 Rroxscaffold_3G00243850 Rroxscaffold_5G00342010 Rroxscaffold_7G00186190
rosa_rugosa	Rorug06G0064100 Rorug07G0156600 Rorug07G0157900 Rorug07G0158000
rosa_samantha	Rh1BG116200 Rh6AG181800 Rh6BG185400 Rh6CG182900 Rh6CG183200 Rh6DG174300 Rh6DG174600 Rh7AG294600 Rh7AG306400 Rh7AG306500 Rh7BG286400 Rh7CG314600 Rh7CG325500 Rh7DG296900 Rh7DG299400 Rh7DG306200
rosa_wichuraiana	Rw6G015640 Rw7G026030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	448
AclWI	GGATC	1 cut(s)	812
AcsI	RAATTY	1 cut(s)	469
AcuI	CTGAAG	2 cut(s)	17, 162
AfiI	CCNNNNNNNGG	1 cut(s)	382
AflIII	ACRYGT	1 cut(s)	349
AgsI	TTSAA	4 cut(s)	43, 271, 508, 793
AluBI	AGCT	3 cut(s)	53, 191, 656
AluI	AGCT	3 cut(s)	53, 191, 656
Alw26I	GTCTC	5 cut(s)	282, 302, 302, 358, 456
AlwI	GGATC	1 cut(s)	812
AlwNI	CAGNNNCTG	1 cut(s)	439
Ama87I	CYCGRG	1 cut(s)	285
ApeKI	GCWGC	1 cut(s)	464
ApoI	RAATTY	1 cut(s)	469
AspLEI	GCGC	2 cut(s)	70, 140
AspS9I	GGNCC	1 cut(s)	282
AsuHPI	GGTGA	1 cut(s)	575
AvaI	CYCGRG	1 cut(s)	285
AvaII	GGWCC	1 cut(s)	282
BbvI	GCAGC	1 cut(s)	451
BccI	CCATC	3 cut(s)	319, 562, 593
BcoDI	GTCTC	5 cut(s)	282, 302, 302, 358, 456
BfaI	CTAG	1 cut(s)	647
BfmI	CTRYAG	1 cut(s)	431
BfoI	RGCGCY	1 cut(s)	141
BisI	GCNGC	1 cut(s)	465
BlpI	GCTNAGC	1 cut(s)	192
BlsI	GCNGC	1 cut(s)	466
Bme18I	GGWCC	1 cut(s)	282
BmeT110I	CYCGRG	1 cut(s)	285
BmgT120I	GGNCC	1 cut(s)	282
BmiI	GGNNCC	1 cut(s)	284
BmsI	GCATC	2 cut(s)	249, 661
BoxI	GACNNNNGTC	1 cut(s)	294
Bpu1102I	GCTNAGC	1 cut(s)	192
BpuEI	CTTGAG	1 cut(s)	659
BsaAI	YACGTR	1 cut(s)	20
BsaI	GGTCTC	1 cut(s)	456
BsaXI	ACNNNNNCTCC	2 cut(s)	299, 329
Bsc4I	CCNNNNNNNGG	1 cut(s)	382
Bse3DI	GCAATG	3 cut(s)	153, 594, 744
BseLI	CCNNNNNNNGG	1 cut(s)	382
BseMI	GCAATG	3 cut(s)	153, 594, 744
BseMII	CTCAG	1 cut(s)	402
BseXI	GCAGC	1 cut(s)	451
BsiHKCI	CYCGRG	1 cut(s)	285
BslI	CCNNNNNNNGG	1 cut(s)	382
BsmAI	GTCTC	5 cut(s)	282, 302, 302, 358, 456
BsmBI	CGTCTC	1 cut(s)	302
Bso31I	GGTCTC	1 cut(s)	456
BsoBI	CYCGRG	1 cut(s)	285
Bsp143I	GATC	3 cut(s)	658, 741, 817
Bsp1720I	GCTNAGC	1 cut(s)	192
BspACI	CCGC	1 cut(s)	448
BspCNI	CTCAG	1 cut(s)	403
BspLI	GGNNCC	1 cut(s)	284
BspPI	GGATC	1 cut(s)	812
BspQI	GCTCTTC	1 cut(s)	646
BspTNI	GGTCTC	1 cut(s)	456
BsrDI	GCAATG	3 cut(s)	153, 594, 744
BssMI	GATC	3 cut(s)	658, 741, 817
Bst4CI	ACNGT	2 cut(s)	313, 435
Bst6I	CTCTTC	1 cut(s)	646
BstBAI	YACGTR	1 cut(s)	20
BstC8I	GCNNGC	3 cut(s)	66, 713, 814
BstDEI	CTNAG	2 cut(s)	192, 411
BstH2I	RGCGCY	1 cut(s)	141
BstHHI	GCGC	2 cut(s)	70, 140
BstKTI	GATC	3 cut(s)	661, 744, 820
BstMAI	GTCTC	5 cut(s)	282, 302, 302, 358, 456
BstMBI	GATC	3 cut(s)	658, 741, 817
BstMWI	GCNNNNNNNGC	1 cut(s)	593
BstNSI	RCATGY	3 cut(s)	68, 200, 353
BstPAI	GACNNNNGTC	1 cut(s)	294
BstSFI	CTRYAG	1 cut(s)	431
BstV1I	GCAGC	1 cut(s)	451
BtsIMutI	CAGTG	1 cut(s)	440
Cac8I	GCNNGC	3 cut(s)	66, 713, 814
CaiI	CAGNNNCTG	1 cut(s)	439
CfoI	GCGC	2 cut(s)	70, 140
Cfr13I	GGNCC	1 cut(s)	282
CviAII	CATG	5 cut(s)	65, 197, 277, 350, 455
CviJI	RGCY	6 cut(s)	53, 181, 191, 344, 464, 656
CviKI_1	RGCY	6 cut(s)	53, 181, 191, 344, 464, 656
DdeI	CTNAG	2 cut(s)	192, 411
DpnI	GATC	3 cut(s)	660, 743, 819
DpnII	GATC	3 cut(s)	658, 741, 817
Eam1104I	CTCTTC	1 cut(s)	646
EarI	CTCTTC	1 cut(s)	646
Eco31I	GGTCTC	1 cut(s)	456
Eco47I	GGWCC	1 cut(s)	282
Eco57I	CTGAAG	2 cut(s)	17, 162
Eco88I	CYCGRG	1 cut(s)	285
EcoO109I	RGGNCCY	1 cut(s)	282
Esp3I	CGTCTC	1 cut(s)	302
FaeI	CATG	5 cut(s)	68, 200, 280, 353, 458
FalI	AAGNNNNNCTT	2 cut(s)	135, 167
FatI	CATG	5 cut(s)	64, 196, 276, 349, 454
Fnu4HI	GCNGC	1 cut(s)	465
Fsp4HI	GCNGC	1 cut(s)	465
FspBI	CTAG	1 cut(s)	647
GlaI	GCGC	2 cut(s)	69, 139
GluI	GCNGC	1 cut(s)	465
HaeII	RGCGCY	1 cut(s)	141
HhaI	GCGC	2 cut(s)	70, 140
Hin1II	CATG	5 cut(s)	68, 200, 280, 353, 458
Hin6I	GCGC	2 cut(s)	68, 138
HinP1I	GCGC	2 cut(s)	68, 138
HinfI	GANTC	1 cut(s)	504
HphI	GGTGA	1 cut(s)	575
Hpy166II	GTNNAC	1 cut(s)	784
Hpy188I	TCNGA	3 cut(s)	36, 377, 663
Hpy188III	TCNNGA	5 cut(s)	299, 355, 611, 638, 793
Hpy8I	GTNNAC	1 cut(s)	784
HpyAV	CCTTC	2 cut(s)	37, 484
HpyCH4III	ACNGT	2 cut(s)	313, 435
HpyCH4IV	ACGT	2 cut(s)	19, 295
HpyCH4V	TGCA	6 cut(s)	110, 262, 467, 620, 674, 737
HpyF10VI	GCNNNNNNNGC	1 cut(s)	593
HpyF3I	CTNAG	2 cut(s)	192, 411
HpySE526I	ACGT	2 cut(s)	19, 295
Hsp92II	CATG	5 cut(s)	68, 200, 280, 353, 458
HspAI	GCGC	2 cut(s)	68, 138
Kzo9I	GATC	3 cut(s)	658, 741, 817
LguI	GCTCTTC	1 cut(s)	646
LpnPI	CCDG	3 cut(s)	330, 624, 729
Lsp1109I	GCAGC	1 cut(s)	451
LweI	GCATC	2 cut(s)	249, 661
MaeI	CTAG	1 cut(s)	647
MaeII	ACGT	2 cut(s)	19, 295
MaeIII	GTNAC	1 cut(s)	629
MalI	GATC	3 cut(s)	660, 743, 819
MboI	GATC	3 cut(s)	658, 741, 817
MboII	GAAGA	3 cut(s)	23, 249, 663
MluCI	AATT	8 cut(s)	14, 38, 163, 250, 469, 481, 497, 823
MmeI	TCCRAC	1 cut(s)	378
MnlI	CCTC	7 cut(s)	119, 230, 273, 333, 438, 567, 634
MseI	TTAA	5 cut(s)	162, 174, 249, 480, 826
MwoI	GCNNNNNNNGC	1 cut(s)	593
NdeII	GATC	3 cut(s)	658, 741, 817
NlaIII	CATG	5 cut(s)	68, 200, 280, 353, 458
NlaIV	GGNNCC	1 cut(s)	284
NmeAIII	GCCGAG	1 cut(s)	362
NspI	RCATGY	3 cut(s)	68, 200, 353
PaeI	GCATGC	1 cut(s)	68
PciI	ACATGT	1 cut(s)	349
PciSI	GCTCTTC	1 cut(s)	646
PfeI	GAWTC	1 cut(s)	504
PflFI	GACNNNGTC	1 cut(s)	313
PkrI	GCNGC	1 cut(s)	466
Ppu21I	YACGTR	1 cut(s)	20
PpuMI	RGGWCCY	1 cut(s)	282
PscI	ACATGT	1 cut(s)	349
PshAI	GACNNNNGTC	1 cut(s)	294
Psp5II	RGGWCCY	1 cut(s)	282
PspN4I	GGNNCC	1 cut(s)	284
PspPI	GGNCC	1 cut(s)	282
PspPPI	RGGWCCY	1 cut(s)	282
PstNI	CAGNNNCTG	1 cut(s)	439
PsyI	GACNNNGTC	1 cut(s)	313
SapI	GCTCTTC	1 cut(s)	646
SaqAI	TTAA	5 cut(s)	162, 174, 249, 480, 826
SatI	GCNGC	1 cut(s)	465
Sau3AI	GATC	3 cut(s)	658, 741, 817
Sau96I	GGNCC	1 cut(s)	282
SetI	ASST	8 cut(s)	22, 55, 130, 193, 222, 298, 658, 709
SfaNI	GCATC	2 cut(s)	249, 661
SfcI	CTRYAG	1 cut(s)	431
SinI	GGWCC	1 cut(s)	282
SmlI	CTYRAG	1 cut(s)	638
SmoI	CTYRAG	1 cut(s)	638
SphI	GCATGC	1 cut(s)	68
Sse9I	AATT	8 cut(s)	14, 38, 163, 250, 469, 481, 497, 823
SsiI	CCGC	1 cut(s)	448
SspI	AATATT	1 cut(s)	769
SspMI	CTAG	1 cut(s)	647
TaaI	ACNGT	2 cut(s)	313, 435
TaiI	ACGT	2 cut(s)	22, 298
TaqI	TCGA	7 cut(s)	60, 72, 300, 317, 356, 545, 803
TasI	AATT	8 cut(s)	14, 38, 163, 250, 469, 481, 497, 823
TfiI	GAWTC	1 cut(s)	504
Tru1I	TTAA	5 cut(s)	162, 174, 249, 480, 826
Tru9I	TTAA	5 cut(s)	162, 174, 249, 480, 826
TscAI	CASTG	1 cut(s)	440
TseI	GCWGC	1 cut(s)	464
TspDTI	ATGAA	2 cut(s)	191, 789
TspRI	CASTG	1 cut(s)	440
Tth111I	GACNNNGTC	1 cut(s)	313
VpaK11BI	GGWCC	1 cut(s)	282
XapI	RAATTY	1 cut(s)	469
XceI	RCATGY	3 cut(s)	68, 200, 353
XspI	CTAG	1 cut(s)	647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.