Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001315

Physical Location & Seq

Genomic Coordinates Reverse (-)

36928634 .. 36929231

Gene Structure 598 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002611

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGTCGAGTAATGGTTGTGATCCAAATGTTGATCCTTCTACCAAATTGATTGCTGGTTTCCTTAAAGCCCGGATAGTGGCGGATGCGCTGGAGATTTATGGTCCACCATATGCTGCTATGATGATCTACCAGAAAGCAAGAAAGGTCGGATGTAGAATATCATTGACTGCTTATAAGCTATTGCTTATGCGCCTTTCTAGATTTGGTAATAAATGTGGAAATTTGCTAAATATTTGGGATGAGATGCAGGAATGTGGTTATGCTTCTGATATCGAAGTTTATGAGTATGTAATCAGTGGACTTTGCAACATAGAGCAGCTTGAAAATGCTGTACTTGTCATGGAAGAGTCTGTACGAAAAGGTTTTTGCCCAAGCAGGCTTACCTATAGCGAACTAAGTAACAAACTTCTTGCTTCAAATAAGTTAGAATGGGCTTATAAGCTATATTTGAAGATTAAAGCTGCCCGTCGTTTTGATAAGGCACAGAGAATTTGCCGTGCTAGGGGATGGCACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

173

Amino Acids

19.62

Weight (kDa)

9.15

Isoelectric Point (pI)

38.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43820
fragaria_vesca	FvH4_5g24880 FvH4_5g25350 FvH4_5g25520
malus_domestica	MD16G1284000.v1.1
prunus_persica	Prupe.5G009500_v2.0.a1
pyrus_communis	pycom16g26010
rosa_chinensis	RchiOBHm_Chr6g0271861 RchiOBHm_Chr6g0271871 RchiOBHm_Chr6g0271981 RchiOBHm_Chr7g0215761 RchiOBHm_Chr7g0215771 RchiOBHm_Chr7g0215901 RchiOBHm_Chr7g0217231 RchiOBHm_Chr7g0219831
rosa_laevigata	RLG00000002611 RLG00000002625 RLG00000013566
rosa_multiflora	Rmu_sc0000055.1_g000008 Rmu_sc0000055.1_g000009 Rmu_sc0000516.1_g000005 Rmu_sc0000516.1_g000006 Rmu_sc0004379.1_g000016 Rmu_sc0006240.1_g000009 Rmu_sc0007857.1_g000006 Rmu_sc0016364.1_g000002 Rmu_sc0016407.1_g000001 Rmu_sc0023052.1_g000001
rosa_roxburghii	Rroxscaffold_2G00114980 Rroxscaffold_3G00243850 Rroxscaffold_5G00342010 Rroxscaffold_7G00186190
rosa_rugosa	Rorug06G0064100 Rorug07G0156600 Rorug07G0157900 Rorug07G0158000
rosa_samantha	Rh1BG116200 Rh6AG181800 Rh6BG185400 Rh6CG182900 Rh6CG183200 Rh6DG174300 Rh6DG174600 Rh7AG294600 Rh7AG306400 Rh7AG306500 Rh7BG286400 Rh7CG314600 Rh7CG325500 Rh7DG296900 Rh7DG299400 Rh7DG306200
rosa_wichuraiana	Rw6G015640 Rw7G026030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	174, 438
AciI	CCGC	1 cut(s)	80
AclWI	GGATC	2 cut(s)	14, 26
AcsI	RAATTY	2 cut(s)	220, 489
AfaI	GTAC	2 cut(s)	333, 354
AfiI	CCNNNNNNNGG	2 cut(s)	76, 502
AgsI	TTSAA	3 cut(s)	323, 417, 451
AluBI	AGCT	4 cut(s)	178, 319, 442, 461
AluI	AGCT	4 cut(s)	178, 319, 442, 461
AlwI	GGATC	2 cut(s)	14, 26
ApeKI	GCWGC	3 cut(s)	113, 316, 461
ApoI	RAATTY	2 cut(s)	220, 489
AspLEI	GCGC	2 cut(s)	88, 192
AspS9I	GGNCC	1 cut(s)	101
AsuC2I	CCSGG	1 cut(s)	70
AvaII	GGWCC	1 cut(s)	101
BarI	GAAGNNNNNNTAC	2 cut(s)	336, 368
BbvI	GCAGC	3 cut(s)	100, 328, 448
BccI	CCATC	1 cut(s)	501
BceAI	ACGGC	1 cut(s)	480
BcnI	CCSGG	1 cut(s)	70
BfaI	CTAG	2 cut(s)	198, 501
BfmI	CTRYAG	1 cut(s)	385
BisI	GCNGC	3 cut(s)	114, 317, 462
BlsI	GCNGC	3 cut(s)	115, 318, 463
Bme1390I	CCNGG	1 cut(s)	70
Bme18I	GGWCC	1 cut(s)	101
BmgT120I	GGNCC	1 cut(s)	101
BmrFI	CCNGG	1 cut(s)	70
BmsI	GCATC	2 cut(s)	73, 234
BpmI	CTGGAG	1 cut(s)	110
BpuMI	CCSGG	1 cut(s)	70
Bsc4I	CCNNNNNNNGG	2 cut(s)	76, 502
BseGI	GGATG	4 cut(s)	88, 155, 244, 512
BseLI	CCNNNNNNNGG	2 cut(s)	76, 502
BseXI	GCAGC	3 cut(s)	100, 328, 448
BsiSI	CCGG	1 cut(s)	70
BslI	CCNNNNNNNGG	2 cut(s)	76, 502
Bsp143I	GATC	3 cut(s)	19, 31, 123
BspACI	CCGC	1 cut(s)	80
BspPI	GGATC	2 cut(s)	14, 26
BssMI	GATC	3 cut(s)	19, 31, 123
Bst6I	CTCTTC	1 cut(s)	339
BstC8I	GCNNGC	1 cut(s)	377
BstDEI	CTNAG	1 cut(s)	395
BstF5I	GGATG	4 cut(s)	88, 155, 244, 512
BstHHI	GCGC	2 cut(s)	88, 192
BstKTI	GATC	3 cut(s)	22, 34, 126
BstMBI	GATC	3 cut(s)	19, 31, 123
BstSCI	CCNGG	1 cut(s)	68
BstSFI	CTRYAG	1 cut(s)	385
BstV1I	GCAGC	3 cut(s)	100, 328, 448
BtsCI	GGATG	4 cut(s)	88, 155, 244, 512
BtsIMutI	CAGTG	1 cut(s)	301
Cac8I	GCNNGC	1 cut(s)	377
CfoI	GCGC	2 cut(s)	88, 192
Cfr13I	GGNCC	1 cut(s)	101
Csp6I	GTAC	2 cut(s)	332, 353
CviAII	CATG	1 cut(s)	340
CviJI	RGCY	7 cut(s)	68, 178, 319, 379, 434, 442, 461
CviKI_1	RGCY	7 cut(s)	68, 178, 319, 379, 434, 442, 461
CviQI	GTAC	2 cut(s)	332, 353
DdeI	CTNAG	1 cut(s)	395
DpnI	GATC	3 cut(s)	21, 33, 125
DpnII	GATC	3 cut(s)	19, 31, 123
Eam1104I	CTCTTC	1 cut(s)	339
EarI	CTCTTC	1 cut(s)	339
EciI	GGCGGA	1 cut(s)	95
Eco32I	GATATC	1 cut(s)	271
Eco47I	GGWCC	1 cut(s)	101
EcoRV	GATATC	1 cut(s)	271
FaeI	CATG	1 cut(s)	343
FatI	CATG	1 cut(s)	339
FauNDI	CATATG	1 cut(s)	109
Fnu4HI	GCNGC	3 cut(s)	114, 317, 462
FokI	GGATG	3 cut(s)	95, 162, 251
Fsp4HI	GCNGC	3 cut(s)	114, 317, 462
FspBI	CTAG	2 cut(s)	198, 501
GlaI	GCGC	2 cut(s)	87, 191
GluI	GCNGC	3 cut(s)	114, 317, 462
GsuI	CTGGAG	1 cut(s)	110
HapII	CCGG	1 cut(s)	70
HhaI	GCGC	2 cut(s)	88, 192
Hin1II	CATG	1 cut(s)	343
Hin6I	GCGC	2 cut(s)	86, 190
HinP1I	GCGC	2 cut(s)	86, 190
HinfI	GANTC	1 cut(s)	347
HpaII	CCGG	1 cut(s)	70
Hpy166II	GTNNAC	2 cut(s)	104, 299
Hpy188I	TCNGA	3 cut(s)	149, 268, 518
Hpy188III	TCNNGA	1 cut(s)	198
Hpy8I	GTNNAC	2 cut(s)	104, 299
Hpy99I	CGWCG	1 cut(s)	471
HpyAV	CCTTC	1 cut(s)	45
HpyCH4V	TGCA	2 cut(s)	247, 306
HpyF3I	CTNAG	1 cut(s)	395
Hsp92II	CATG	1 cut(s)	343
HspAI	GCGC	2 cut(s)	86, 190
Kzo9I	GATC	3 cut(s)	19, 31, 123
LpnPI	CCDG	6 cut(s)	39, 74, 83, 143, 233, 361
Lsp1109I	GCAGC	3 cut(s)	100, 328, 448
LweI	GCATC	2 cut(s)	73, 234
MaeI	CTAG	2 cut(s)	198, 501
MaeIII	GTNAC	1 cut(s)	398
MalI	GATC	3 cut(s)	21, 33, 125
MboI	GATC	3 cut(s)	19, 31, 123
MboII	GAAGA	2 cut(s)	356, 463
MluCI	AATT	3 cut(s)	44, 220, 489
MlyI	GAGTC	1 cut(s)	356
MmeI	TCCRAC	1 cut(s)	127
MseI	TTAA	2 cut(s)	63, 456
MspI	CCGG	1 cut(s)	70
MspR9I	CCNGG	1 cut(s)	70
NciI	CCSGG	1 cut(s)	70
NdeI	CATATG	1 cut(s)	109
NdeII	GATC	3 cut(s)	19, 31, 123
NlaIII	CATG	1 cut(s)	343
PkrI	GCNGC	3 cut(s)	115, 318, 463
PleI	GAGTC	1 cut(s)	355
PpsI	GAGTC	1 cut(s)	355
PsiI	TTATAA	2 cut(s)	174, 438
PspPI	GGNCC	1 cut(s)	101
RsaI	GTAC	2 cut(s)	333, 354
RsaNI	GTAC	2 cut(s)	332, 353
SaqAI	TTAA	2 cut(s)	63, 456
SatI	GCNGC	3 cut(s)	114, 317, 462
Sau3AI	GATC	3 cut(s)	19, 31, 123
Sau96I	GGNCC	1 cut(s)	101
SchI	GAGTC	1 cut(s)	356
ScrFI	CCNGG	1 cut(s)	70
SetI	ASST	7 cut(s)	147, 180, 321, 364, 386, 444, 463
SfaNI	GCATC	2 cut(s)	73, 234
SfcI	CTRYAG	1 cut(s)	385
SinI	GGWCC	1 cut(s)	101
Sse9I	AATT	3 cut(s)	44, 220, 489
SsiI	CCGC	1 cut(s)	80
SspI	AATATT	1 cut(s)	232
SspMI	CTAG	2 cut(s)	198, 501
StyD4I	CCNGG	1 cut(s)	68
TaqI	TCGA	2 cut(s)	5, 273
TasI	AATT	3 cut(s)	44, 220, 489
TatI	WGTACW	1 cut(s)	331
Tru1I	TTAA	2 cut(s)	63, 456
Tru9I	TTAA	2 cut(s)	63, 456
TscAI	CASTG	1 cut(s)	301
TseI	GCWGC	3 cut(s)	113, 316, 461
TspRI	CASTG	1 cut(s)	301
VpaK11BI	GGWCC	1 cut(s)	101
XapI	RAATTY	2 cut(s)	220, 489
XbaI	TCTAGA	1 cut(s)	197
XspI	CTAG	2 cut(s)	198, 501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.