pycom16g26010

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Reverse (-)
28233611 .. 28236779
3169 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g26010.3

Sequence Viewer

Length: 1683 bp
ATGGCGTTTCACGGTGCTTTGCAATCGCTGCGATCGCTCAGCAGGGGCCCATCCACCAGGTATTCTTTCCCTTACCTTCCTTCCCCAATTTCATCATCTCACTTCTCAGCCCTTTATGCTCAATCCAATTCGTTGCATGATGACCGTCCGATCAACAACCAATCTACTCCCCACGAACGATTTGTTCTTGATCAACTCTCTAATCTGTTACCAGTACCTCTTAATAATTCGGCTCCAAAACAATTGGAACCGAGTAATTCGGAGAAGCCGATAAATGTTAGGGCCCCTGACGGTTTCTTGTTGCCGGATGAGAAATTGCGTGGTGTTTTTCTTCAGAAATTGAGGGGTACAACTGCAATTGAGCATGCTTTGGACAATGTCGGTGTCGATTTGAGTGTTGATGTTGTTGCACAGGTAGTGAATAGAGGGAATTTAAGCAGCGAAGCGATGCTTATGTTCTTTAATTGGGTGATTAAGAAGCCCGCCATAGCGAAAGATATCCACACGTATCATATAATCCTCAAAGCATTAGGCAGAAGAAAGTTCTTTACACATATGATGCATATTTTGCATAACATGAGGGCACGAGGGATAAGTCCCGATTTGGAGACCATATCGATTGTAATGGATAGTTTCGTGAGGGCTGGATATGTGTCCAAGGCAATTCAAGTGTTCCGAAACTTGGAAGAAGTTGGTTTGGATTGTGATACTGAGTCTTTGAATATGCTTGTACAGTGTTTGTGCCAGCGGTCTCATGTAGGTGCTGCAAATTCGTTTCTCAATTCCGTCAAGGGGAAGATACAGTTCAATGGTACTACGTATAATATTGTCATTGGTGGATGGTCAAGAAATGGAAGAGTTAGTGAAATGGAGAGGATTTTGGAAGTAATGGTAGCAGATGGGTTCAGTCCCGATAATTCGACATTCAGTTTCATTATTGAGGGTTTAGGGAGAGCTGGTCGGATTGATGATGCTGTTGAGATATTTGATAGCATGAAGACAAAAGGTTGTGTGCCAGACGCCAGAGCTTATAATGCCATGATTTCAAACTTTATCTCTGTTAGAGGTTTTGATGAATGTCTGAAGTACTATAAGGGTATGCCAAGTAATAATTGTGATCCAAATATTGATACTTATACCAATTTAATTGATGCTTTCCTTAAAGCCCGGAAAGTGGCTGATGCTCTTGAAATGTTTGATGAGATGTTAGGTCGAGGTTTTCTTCCCAGTACCGGAACATTAACCTCCTTTATTGAACCCTTATGTAACTACGGTCCACCCTATGCTGCGATGATGATCTACCAGAAGGCAAGAAAGGTTGGATGCAGAGTATCATTGAGTGCTTATAAGCTATTGCTTATGCGACTTTCTAGGTTTGGCAAATGTGGAATGTTGCTAAACATTTGGGAGGATATGCAGGAATGTGGATATGGTTCGGATATGGAAGTTTATGATTATATAATTAATGGACTTTGCAACAATGGGCAGCTTGAAAGTGCAGTACTTGTCATGGAAGAGTCTGTGCAGAAAGGCAAGGAAAGGCTGAAAACGGAAAACAAGGCAAAAGAGAAACCATTTTGCGACAATATTGGTGTATCATCAGTTGGGAAGATTCCGGGGCAGCTGCCGGACTTTGTTTTCACCATTAGCAATATTGGTGTTGCTTCCGTAACTACCAGTTGA

Protein Analysis

561

Amino Acids

62.21

Weight (kDa)

7.54

Isoelectric Point (pI)

39.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1032, 1347
AciI CCGC 2 cut(s) 483, 748
AclWI GGATC 1 cut(s) 1112
AcsI RAATTY 2 cut(s) 430, 769
AcuI CTGAAG 2 cut(s) 317, 1103
AcyI GRCGYC 1 cut(s) 1020
AfaI GTAC 7 cut(s) 216, 349, 732, 814, 1088, 1231, 1503
AfiI CCNNNNNNNGG 4 cut(s) 682, 792, 1174, 1232
AflIII ACRYGT 1 cut(s) 504
AgsI TTSAA 7 cut(s) 668, 721, 808, 1047, 1190, 1256, 1493
AjnI CCWGG 1 cut(s) 56
AluBI AGCT 5 cut(s) 956, 1028, 1351, 1489, 1624
AluI AGCT 5 cut(s) 956, 1028, 1351, 1489, 1624
Alw26I GTCTC 2 cut(s) 602, 756
AlwI GGATC 1 cut(s) 1112
AoxI GGCC 2 cut(s) 46, 282
ApaI GGGCCC 2 cut(s) 50, 286
ApeKI GCWGC 7 cut(s) 28, 438, 764, 1286, 1486, 1621, 1624
ApoI RAATTY 2 cut(s) 430, 769
AseI ATTAAT 1 cut(s) 1464
AsiSI GCGATCGC 1 cut(s) 35
AspS9I GGNCC 5 cut(s) 46, 47, 282, 283, 1274
AsuC2I CCSGG 2 cut(s) 1168, 1617
AsuHPI GGTGA 2 cut(s) 481, 1633
AvaII GGWCC 1 cut(s) 1274
BaeGI GKGCMC 3 cut(s) 50, 286, 586
BanII GRGCYC 2 cut(s) 50, 286
BauI CACGAG 1 cut(s) 585
BbsI GAAGAC 1 cut(s) 1004
BbvI GCAGC 7 cut(s) 15, 450, 751, 1273, 1498, 1611, 1633
BccI CCATC 3 cut(s) 58, 834, 893
BciT130I CCWGG 1 cut(s) 58
BclI TGATCA 1 cut(s) 190
BcnI CCSGG 2 cut(s) 1168, 1617
BcoDI GTCTC 2 cut(s) 602, 756
BfaI CTAG 1 cut(s) 1371
BisI GCNGC 7 cut(s) 29, 439, 765, 1287, 1487, 1622, 1625
BlpI GCTNAGC 1 cut(s) 38
BlsI GCNGC 7 cut(s) 30, 440, 766, 1288, 1488, 1623, 1626
BmcAI AGTACT 2 cut(s) 1088, 1503
Bme1390I CCNGG 3 cut(s) 58, 1168, 1617
Bme18I GGWCC 1 cut(s) 1274
BmgT120I GGNCC 5 cut(s) 46, 47, 282, 283, 1274
BmiI GGNNCC 6 cut(s) 47, 48, 234, 249, 284, 285
BmrFI CCNGG 3 cut(s) 58, 1168, 1617
BmrI ACTGGG 1 cut(s) 1221
BmsI GCATC 6 cut(s) 438, 549, 961, 1141, 1171, 1313
BmuI ACTGGG 1 cut(s) 1221
BpiI GAAGAC 1 cut(s) 1004
Bpu1102I GCTNAGC 1 cut(s) 38
BpuMI CCSGG 2 cut(s) 1168, 1617
Bsa29I ATCGAT 1 cut(s) 617
BsaAI YACGTR 2 cut(s) 507, 819
BsaBI GATNNNNATC 1 cut(s) 1295
BsaHI GRCGYC 1 cut(s) 1020
BsaI GGTCTC 2 cut(s) 602, 756
BsaJI CCNNGG 2 cut(s) 657, 1616
BsaWI WCCGGW 1 cut(s) 1232
BsaXI ACNNNNNCTCC 2 cut(s) 943, 973
Bsc4I CCNNNNNNNGG 4 cut(s) 682, 792, 1174, 1232
Bse1I ACTGG 3 cut(s) 212, 1227, 1677
Bse8I GATNNNNATC 1 cut(s) 1295
BseBI CCWGG 1 cut(s) 58
BseCI ATCGAT 1 cut(s) 617
BseDI CCNNGG 2 cut(s) 657, 1616
BseGI GGATG 4 cut(s) 50, 313, 845, 1328
BseJI GATNNNNATC 1 cut(s) 1295
BseLI CCNNNNNNNGG 4 cut(s) 682, 792, 1174, 1232
BseMII CTCAG 3 cut(s) 52, 120, 702
BseNI ACTGG 3 cut(s) 212, 1227, 1677
BseSI GKGCMC 3 cut(s) 50, 286, 586
BseXI GCAGC 7 cut(s) 15, 450, 751, 1273, 1498, 1611, 1633
BsgI GTGCAG 2 cut(s) 1518, 1544
Bsh1285I CGRYCG 1 cut(s) 35
BshFI GGCC 2 cut(s) 48, 284
BshVI ATCGAT 1 cut(s) 617
BsiEI CGRYCG 1 cut(s) 35
BsiSI CCGG 5 cut(s) 305, 1168, 1233, 1616, 1628
BslFI GGGAC 2 cut(s) 582, 894
BslI CCNNNNNNNGG 4 cut(s) 682, 792, 1174, 1232
BsmAI GTCTC 2 cut(s) 602, 756
BsmFI GGGAC 2 cut(s) 582, 894
BsnI GGCC 2 cut(s) 48, 284
Bso31I GGTCTC 2 cut(s) 602, 756
Bsp120I GGGCCC 2 cut(s) 46, 282
Bsp1286I GDGCHC 3 cut(s) 50, 286, 586
Bsp1407I TGTACA 1 cut(s) 730
Bsp143I GATC 5 cut(s) 32, 150, 190, 1117, 1296
Bsp1720I GCTNAGC 1 cut(s) 38
BspACI CCGC 2 cut(s) 483, 748
BspANI GGCC 2 cut(s) 48, 284
BspCNI CTCAG 3 cut(s) 51, 119, 703
BspDI ATCGAT 1 cut(s) 617
BspLI GGNNCC 6 cut(s) 47, 48, 234, 249, 284, 285
BspPI GGATC 1 cut(s) 1112
BspTNI GGTCTC 2 cut(s) 602, 756
BsrGI TGTACA 1 cut(s) 730
BsrI ACTGG 3 cut(s) 212, 1227, 1677
BssECI CCNNGG 2 cut(s) 657, 1616
BssMI GATC 5 cut(s) 32, 150, 190, 1117, 1296
BssNI GRCGYC 1 cut(s) 1020
BssSI CACGAG 1 cut(s) 585
BssT1I CCWWGG 1 cut(s) 657
Bst2BI CACGAG 1 cut(s) 585
Bst2UI CCWGG 1 cut(s) 58
Bst4CI ACNGT 6 cut(s) 14, 146, 293, 735, 804, 1274
Bst6I CTCTTC 2 cut(s) 850, 1509
BstACI GRCGYC 1 cut(s) 1020
BstAPI GCANNNNNTGC 2 cut(s) 28, 568
BstAUI TGTACA 1 cut(s) 730
BstBAI YACGTR 2 cut(s) 507, 819
BstC8I GCNNGC 3 cut(s) 366, 483, 746
BstDEI CTNAG 3 cut(s) 38, 106, 711
BstF5I GGATG 4 cut(s) 50, 313, 845, 1328
BstKTI GATC 5 cut(s) 35, 153, 193, 1120, 1299
BstMAI GTCTC 2 cut(s) 602, 756
BstMBI GATC 5 cut(s) 32, 150, 190, 1117, 1296
BstMCI CGRYCG 1 cut(s) 35
BstMWI GCNNNNNNNGC 5 cut(s) 28, 34, 116, 568, 1034
BstNI CCWGG 1 cut(s) 58
BstNSI RCATGY 1 cut(s) 368
BstSCI CCNGG 3 cut(s) 56, 1166, 1615
BstSLI GKGCMC 3 cut(s) 50, 286, 586
BstSNI TACGTA 1 cut(s) 819
BstV1I GCAGC 7 cut(s) 15, 450, 751, 1273, 1498, 1611, 1633
BstV2I GAAGAC 1 cut(s) 1004
Bsu15I ATCGAT 1 cut(s) 617
BsuRI GGCC 2 cut(s) 48, 284
BsuTUI ATCGAT 1 cut(s) 617
BtgZI GCGATG 2 cut(s) 461, 1304
BtsCI GGATG 4 cut(s) 50, 313, 845, 1328
BtsIMutI CAGTG 1 cut(s) 740
Cac8I GCNNGC 3 cut(s) 366, 483, 746
Cfr13I GGNCC 5 cut(s) 46, 47, 282, 283, 1274
ClaI ATCGAT 1 cut(s) 617
CseI GACGC 1 cut(s) 1028
CsiI ACCWGGT 1 cut(s) 56
Csp6I GTAC 7 cut(s) 215, 348, 731, 813, 1087, 1230, 1502
CviAII CATG 7 cut(s) 137, 365, 577, 755, 994, 1039, 1510
CviQI GTAC 7 cut(s) 215, 348, 731, 813, 1087, 1230, 1502
DdeI CTNAG 3 cut(s) 38, 106, 711
DpnI GATC 5 cut(s) 34, 152, 192, 1119, 1298
DpnII GATC 5 cut(s) 32, 150, 190, 1117, 1296
Eam1104I CTCTTC 2 cut(s) 850, 1509
EarI CTCTTC 2 cut(s) 850, 1509
Eco105I TACGTA 1 cut(s) 819
Eco130I CCWWGG 1 cut(s) 657
Eco24I GRGCYC 2 cut(s) 50, 286
Eco31I GGTCTC 2 cut(s) 602, 756
Eco32I GATATC 1 cut(s) 499
Eco47I GGWCC 1 cut(s) 1274
Eco57I CTGAAG 2 cut(s) 317, 1103
EcoO109I RGGNCCY 3 cut(s) 46, 282, 283
EcoRII CCWGG 1 cut(s) 56
EcoRV GATATC 1 cut(s) 499
EcoT14I CCWWGG 1 cut(s) 657
EcoT22I ATGCAT 1 cut(s) 564
EcoT38I GRGCYC 2 cut(s) 50, 286
ErhI CCWWGG 1 cut(s) 657
FaeI CATG 7 cut(s) 140, 368, 580, 758, 997, 1042, 1513
FalI AAGNNNNNCTT 2 cut(s) 435, 467
FaqI GGGAC 2 cut(s) 582, 894
FatI CATG 7 cut(s) 136, 364, 576, 754, 993, 1038, 1509
FauI CCCGC 1 cut(s) 490
FauNDI CATATG 1 cut(s) 555
FbaI TGATCA 1 cut(s) 190
Fnu4HI GCNGC 7 cut(s) 29, 439, 765, 1287, 1487, 1622, 1625
FokI GGATG 4 cut(s) 37, 320, 852, 1335
FriOI GRGCYC 2 cut(s) 50, 286
Fsp4HI GCNGC 7 cut(s) 29, 439, 765, 1287, 1487, 1622, 1625
FspBI CTAG 1 cut(s) 1371
GluI GCNGC 7 cut(s) 29, 439, 765, 1287, 1487, 1622, 1625
HaeIII GGCC 2 cut(s) 48, 284
HapII CCGG 5 cut(s) 305, 1168, 1233, 1616, 1628
HgaI GACGC 1 cut(s) 1028
Hin1I GRCGYC 1 cut(s) 1020
Hin1II CATG 7 cut(s) 140, 368, 580, 758, 997, 1042, 1513
HinfI GANTC 3 cut(s) 713, 1517, 1612
HpaII CCGG 5 cut(s) 305, 1168, 1233, 1616, 1628
HphI GGTGA 2 cut(s) 481, 1633
Hpy166II GTNNAC 1 cut(s) 1277
Hpy188I TCNGA 7 cut(s) 150, 262, 336, 677, 963, 1083, 1438
Hpy188III TCNNGA 6 cut(s) 188, 599, 637, 846, 911, 1187
Hpy8I GTNNAC 1 cut(s) 1277
HpyAV CCTTC 3 cut(s) 86, 90, 1300
HpyCH4III ACNGT 6 cut(s) 14, 146, 293, 735, 804, 1274
HpyCH4IV ACGT 2 cut(s) 506, 818
HpyF10VI GCNNNNNNNGC 5 cut(s) 28, 34, 116, 568, 1034
HpyF3I CTNAG 3 cut(s) 38, 106, 711
HpySE526I ACGT 2 cut(s) 506, 818
Hsp92I GRCGYC 1 cut(s) 1020
Hsp92II CATG 7 cut(s) 140, 368, 580, 758, 997, 1042, 1513
Ksp22I TGATCA 1 cut(s) 190
Kzo9I GATC 5 cut(s) 32, 150, 190, 1117, 1296
LmnI GCTCC 1 cut(s) 238
Lsp1109I GCAGC 7 cut(s) 15, 450, 751, 1273, 1498, 1611, 1633
LweI GCATC 6 cut(s) 438, 549, 961, 1141, 1171, 1313
MabI ACCWGGT 1 cut(s) 56
MaeI CTAG 1 cut(s) 1371
MaeII ACGT 2 cut(s) 506, 818
MaeIII GTNAC 3 cut(s) 207, 1265, 1669
MalI GATC 5 cut(s) 34, 152, 192, 1119, 1298
MboI GATC 5 cut(s) 32, 150, 190, 1117, 1296
MboII GAAGA 9 cut(s) 323, 549, 698, 808, 867, 1009, 1214, 1526, 1621
MfeI CAATTG 2 cut(s) 242, 357
MhlI GDGCHC 3 cut(s) 50, 286, 586
MlyI GAGTC 2 cut(s) 722, 1526
MmeI TCCRAC 2 cut(s) 941, 1300
Mph1103I ATGCAT 1 cut(s) 564
MseI TTAA 8 cut(s) 222, 434, 462, 474, 1145, 1161, 1241, 1464
MslI CAYNNNNRTG 1 cut(s) 759
MspA1I CMGCKG 2 cut(s) 748, 1624
MspI CCGG 5 cut(s) 305, 1168, 1233, 1616, 1628
MspR9I CCNGG 3 cut(s) 58, 1168, 1617
MunI CAATTG 2 cut(s) 242, 357
MvaI CCWGG 1 cut(s) 58
MwoI GCNNNNNNNGC 5 cut(s) 28, 34, 116, 568, 1034
NciI CCSGG 2 cut(s) 1168, 1617
NdeI CATATG 1 cut(s) 555
NdeII GATC 5 cut(s) 32, 150, 190, 1117, 1296
NlaIII CATG 7 cut(s) 140, 368, 580, 758, 997, 1042, 1513
NlaIV GGNNCC 6 cut(s) 47, 48, 234, 249, 284, 285
NsiI ATGCAT 1 cut(s) 564
NspI RCATGY 1 cut(s) 368
PaeI GCATGC 1 cut(s) 368
PcsI WCGNNNNNNNCGW 1 cut(s) 266
PfeI GAWTC 1 cut(s) 1612
PflFI GACNNNGTC 1 cut(s) 377
PkrI GCNGC 7 cut(s) 30, 440, 766, 1288, 1488, 1623, 1626
Ple19I CGATCG 1 cut(s) 35
PleI GAGTC 2 cut(s) 721, 1525
PpsI GAGTC 2 cut(s) 721, 1525
Ppu21I YACGTR 2 cut(s) 507, 819
PshBI ATTAAT 1 cut(s) 1464
PsiI TTATAA 2 cut(s) 1032, 1347
Psp6I CCWGG 1 cut(s) 56
PspGI CCWGG 1 cut(s) 56
PspN4I GGNNCC 6 cut(s) 47, 48, 234, 249, 284, 285
PspOMI GGGCCC 2 cut(s) 46, 282
PspPI GGNCC 5 cut(s) 46, 47, 282, 283, 1274
PsyI GACNNNGTC 1 cut(s) 377
PvuI CGATCG 1 cut(s) 35
PvuII CAGCTG 1 cut(s) 1624
RgaI GCGATCGC 1 cut(s) 35
RsaI GTAC 7 cut(s) 216, 349, 732, 814, 1088, 1231, 1503
RsaNI GTAC 7 cut(s) 215, 348, 731, 813, 1087, 1230, 1502
RseI CAYNNNNRTG 1 cut(s) 759
SaqAI TTAA 8 cut(s) 222, 434, 462, 474, 1145, 1161, 1241, 1464
SatI GCNGC 7 cut(s) 29, 439, 765, 1287, 1487, 1622, 1625
Sau3AI GATC 5 cut(s) 32, 150, 190, 1117, 1296
Sau96I GGNCC 5 cut(s) 46, 47, 282, 283, 1274
ScaI AGTACT 2 cut(s) 1088, 1503
SchI GAGTC 2 cut(s) 722, 1526
ScrFI CCNGG 3 cut(s) 58, 1168, 1617
SduI GDGCHC 3 cut(s) 50, 286, 586
SexAI ACCWGGT 1 cut(s) 56
SfaAI GCGATCGC 1 cut(s) 35
SfaNI GCATC 6 cut(s) 438, 549, 961, 1141, 1171, 1313
SgfI GCGATCGC 1 cut(s) 35
SinI GGWCC 1 cut(s) 1274
SmiMI CAYNNNNRTG 1 cut(s) 759
SnaBI TACGTA 1 cut(s) 819
SphI GCATGC 1 cut(s) 368
SsiI CCGC 2 cut(s) 483, 748
SspI AATATT 4 cut(s) 826, 1126, 1588, 1654
SspMI CTAG 1 cut(s) 1371
StyD4I CCNGG 3 cut(s) 56, 1166, 1615
StyI CCWWGG 1 cut(s) 657
TaaI ACNGT 6 cut(s) 14, 146, 293, 735, 804, 1274
TaiI ACGT 2 cut(s) 509, 821
TaqI TCGA 4 cut(s) 387, 617, 920, 1213
TatI WGTACW 3 cut(s) 730, 1086, 1501
TfiI GAWTC 1 cut(s) 1612
Tru1I TTAA 8 cut(s) 222, 434, 462, 474, 1145, 1161, 1241, 1464
Tru9I TTAA 8 cut(s) 222, 434, 462, 474, 1145, 1161, 1241, 1464
TscAI CASTG 1 cut(s) 740
TseI GCWGC 7 cut(s) 28, 438, 764, 1286, 1486, 1621, 1624
TspDTI ATGAA 4 cut(s) 81, 922, 1010, 1089
TspGWI ACGGA 3 cut(s) 775, 1565, 1657
TspRI CASTG 1 cut(s) 740
Tth111I GACNNNGTC 1 cut(s) 377
VpaK11BI GGWCC 1 cut(s) 1274
VspI ATTAAT 1 cut(s) 1464
XapI RAATTY 2 cut(s) 430, 769
XceI RCATGY 1 cut(s) 368
XspI CTAG 1 cut(s) 1371
ZrmI AGTACT 2 cut(s) 1088, 1503
Zsp2I ATGCAT 1 cut(s) 564
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.