Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001315

Physical Location & Seq

Genomic Coordinates Forward (+)

31892753 .. 31898010

Gene Structure 5258 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24386

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGGCGTTTCACGGCGCTTCACGCCGTGTCCTATCATCGCTGCCATCTCTCAGCAGCAGAGCCAGGTACTACCCAATGCTTCACCTTCATTCACCAATTTCTTCGTCTCTCTTTTCAACTCTTAATGCTCAATCCCAACATGAATATGTCAAATTCAATCCCAACCAGTCTTCTTCTCATGACGAACCTTCTGTTCTTCACCAGCTCTCTGTTCTGTTACCAATCCCCCATCAAATTTTACCTCCAAAACAATTTGACCCCACTGATTCGAATAAGAAGGTAGAATCTGTTAGGGCTGTGGATGGGTTTTTAATGCCCGACGAGAAATTACGTGGGGTTTTTCTTCAGAAATTGAAGGGTATAGCTGTAATTGAGCATGCGCTCGACAATGTTGGTGTGGATTTGAGTGTTGATGTTGTTGCACAAGTAGTGAATAGAGGTTGTTTAGGCGGTGAAGCAATGCTTGTGTTTTTTAATTGGGCGATTAAGAAGCCAAATGTAGCTAAGCATGTTCATACATACCATATAATCCTCAAAGCATTGGGTAGAAGAAAGTTCTTTAATTATATGATGCAAGTTTTGAATGACATGAGGAGCCAAGACATACGTCTCGATTTGGAGACTGTGTCGATTGTGATGGATAGTTTTGTGAGGGCTGGACATGTCTCGAAAGCAATCCAAATGTTCCGAAACTCGGCAGAGTTTGGGTTGGATTGCGATACTGAGTGTCTGAATGTGCTTCTGCAGTGTCTGTGTCAGCGGTCTCATGTAGTGGCTGCAAATTCGTTTCTTAATTCTGTGAAGGGGAAAGTGCGATTCAATGGCACTACGTATAACATTGTTATTGGTGGGTGGTCGAAATATGGTAGAGTTGGTGAGATGGAGAGGACTTTGGAAGCAATGGTAGCAGATGGGTTTAGTCCTGATAGTGCAACTTTCAGTTACATTCTTGAGGGTCTAGGAAGAGCTGATCGGATTGACGATGCAGTTGAGATTTTTGAGAGCATGAAGGGGAAAGGTTGCGTGCCAGACACCATTACATACAATGCAATGATCTCTAACTTCATCTCTGTTGCGAATATTGATGAATGTGTAAACTACTTCAAGAGTATGTCGAGTAATGCTTGCGATCCAAATGTTGATACTTATACCAAATTGATTGCTGGTTTCCTTAAAGCCCGGAAAGTGGCGGATGCACTGGAGATGTTTGATGAGATGTTAAGTCGAGGATTTGTTCCTACTACGGGACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

417

Amino Acids

46.36

Weight (kDa)

7.2

Isoelectric Point (pI)

37.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	243 - 371	5e-06	Fungal tetratrico peptide repeats
PPR_2	PF13041	277 - 321	4.4e-08	PPR repeat family
PPR_3	PF13812	298 - 354	4.4e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	304 - 337	2.2e-06	PPR repeat
PPR_2	PF13041	312 - 355	3.5e-10	PPR repeat family
PPR_long	PF17177	325 - 413	2.7e-07	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	343 - 392	4.8e-11	PPR repeat family
PPR_1	PF12854	376 - 406	8.3e-07	PPR repeat
PPR_2	PF13041	378 - 414	1.7e-08	PPR repeat family
PPR	PF01535	382 - 411	5.4e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43820
fragaria_vesca	FvH4_5g24880 FvH4_5g25350 FvH4_5g25520
malus_domestica	MD16G1284000.v1.1
prunus_persica	Prupe.5G009500_v2.0.a1
pyrus_communis	pycom16g26010
rosa_chinensis	RchiOBHm_Chr6g0271861 RchiOBHm_Chr6g0271871 RchiOBHm_Chr6g0271981 RchiOBHm_Chr7g0215761 RchiOBHm_Chr7g0215771 RchiOBHm_Chr7g0215901 RchiOBHm_Chr7g0217231 RchiOBHm_Chr7g0219831
rosa_laevigata	RLG00000002611 RLG00000002625 RLG00000013566
rosa_multiflora	Rmu_sc0000055.1_g000008 Rmu_sc0000055.1_g000009 Rmu_sc0000516.1_g000005 Rmu_sc0000516.1_g000006 Rmu_sc0004379.1_g000016 Rmu_sc0006240.1_g000009 Rmu_sc0007857.1_g000006 Rmu_sc0016364.1_g000002 Rmu_sc0016407.1_g000001 Rmu_sc0023052.1_g000001
rosa_roxburghii	Rroxscaffold_2G00114980 Rroxscaffold_3G00243850 Rroxscaffold_5G00342010 Rroxscaffold_7G00186190
rosa_rugosa	Rorug06G0064100 Rorug07G0156600 Rorug07G0157900 Rorug07G0158000
rosa_samantha	Rh1BG116200 Rh6AG181800 Rh6BG185400 Rh6CG182900 Rh6CG183200 Rh6DG174300 Rh6DG174600 Rh7AG294600 Rh7AG306400 Rh7AG306500 Rh7BG286400 Rh7CG314600 Rh7CG325500 Rh7DG296900 Rh7DG299400 Rh7DG306200
rosa_wichuraiana	Rw6G015640 Rw7G026030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	450, 760, 1190
AclWI	GGATC	1 cut(s)	1124
AcsI	RAATTY	3 cut(s)	152, 234, 781
AcuI	CTGAAG	1 cut(s)	329
AdeI	CACNNNGTG	1 cut(s)	26
AfaI	GTAC	1 cut(s)	68
AfiI	CCNNNNNNNGG	3 cut(s)	694, 1186, 1244
AflIII	ACRYGT	1 cut(s)	661
AgsI	TTSAA	6 cut(s)	117, 157, 355, 583, 820, 1105
AjnI	CCWGG	1 cut(s)	62
AluBI	AGCT	4 cut(s)	205, 365, 503, 968
AluI	AGCT	4 cut(s)	205, 365, 503, 968
Alw26I	GTCTC	5 cut(s)	111, 614, 614, 670, 768
AlwI	GGATC	1 cut(s)	1124
AlwNI	CAGNNNCTG	1 cut(s)	751
ApeKI	GCWGC	3 cut(s)	40, 54, 776
ApoI	RAATTY	3 cut(s)	152, 234, 781
AspLEI	GCGC	2 cut(s)	17, 382
AsuC2I	CCSGG	1 cut(s)	1180
AsuHPI	GGTGA	5 cut(s)	74, 84, 191, 464, 887
AsuII	TTCGAA	1 cut(s)	269
BbsI	GAAGAC	1 cut(s)	162
BbvI	GCAGC	3 cut(s)	27, 66, 763
BccI	CCATC	6 cut(s)	52, 237, 296, 631, 874, 905
BceAI	ACGGC	2 cut(s)	9, 28
BciT130I	CCWGG	1 cut(s)	64
BcnI	CCSGG	1 cut(s)	1180
BcoDI	GTCTC	5 cut(s)	111, 614, 614, 670, 768
BfaI	CTAG	1 cut(s)	959
BfmI	CTRYAG	1 cut(s)	743
BfoI	RGCGCY	1 cut(s)	18
BisI	GCNGC	3 cut(s)	41, 55, 777
BlpI	GCTNAGC	1 cut(s)	504
BlsI	GCNGC	3 cut(s)	42, 56, 778
Bme1390I	CCNGG	2 cut(s)	64, 1180
BmiI	GGNNCC	1 cut(s)	596
BmrFI	CCNGG	2 cut(s)	64, 1180
BmsI	GCATC	3 cut(s)	561, 973, 1183
BoxI	GACNNNNGTC	1 cut(s)	606
BpiI	GAAGAC	1 cut(s)	162
BpmI	CTGGAG	1 cut(s)	1220
Bpu1102I	GCTNAGC	1 cut(s)	504
Bpu14I	TTCGAA	1 cut(s)	269
BpuEI	CTTGAG	1 cut(s)	971
BpuMI	CCSGG	1 cut(s)	1180
BsaAI	YACGTR	2 cut(s)	332, 831
BsaI	GGTCTC	1 cut(s)	768
BsaXI	ACNNNNNCTCC	2 cut(s)	611, 641
Bsc4I	CCNNNNNNNGG	3 cut(s)	694, 1186, 1244
Bse1I	ACTGG	2 cut(s)	166, 1203
Bse3DI	GCAATG	3 cut(s)	465, 906, 1056
BseBI	CCWGG	1 cut(s)	64
BseGI	GGATG	2 cut(s)	307, 1198
BseLI	CCNNNNNNNGG	3 cut(s)	694, 1186, 1244
BseMI	GCAATG	3 cut(s)	465, 906, 1056
BseMII	CTCAG	2 cut(s)	64, 714
BseNI	ACTGG	2 cut(s)	166, 1203
BseRI	GAGGAG	1 cut(s)	607
BseXI	GCAGC	3 cut(s)	27, 66, 763
BsiSI	CCGG	1 cut(s)	1180
BslI	CCNNNNNNNGG	3 cut(s)	694, 1186, 1244
BsmAI	GTCTC	5 cut(s)	111, 614, 614, 670, 768
BsmBI	CGTCTC	2 cut(s)	111, 614
Bso31I	GGTCTC	1 cut(s)	768
Bsp119I	TTCGAA	1 cut(s)	269
Bsp143I	GATC	3 cut(s)	970, 1053, 1129
Bsp1720I	GCTNAGC	1 cut(s)	504
BspACI	CCGC	3 cut(s)	450, 760, 1190
BspCNI	CTCAG	2 cut(s)	63, 715
BspHI	TCATGA	1 cut(s)	178
BspLI	GGNNCC	1 cut(s)	596
BspMAI	CTGCAG	1 cut(s)	747
BspPI	GGATC	1 cut(s)	1124
BspQI	GCTCTTC	1 cut(s)	958
BspT104I	TTCGAA	1 cut(s)	269
BspTNI	GGTCTC	1 cut(s)	768
BsrDI	GCAATG	3 cut(s)	465, 906, 1056
BsrI	ACTGG	2 cut(s)	166, 1203
BssMI	GATC	3 cut(s)	970, 1053, 1129
Bst2UI	CCWGG	1 cut(s)	64
Bst4CI	ACNGT	1 cut(s)	625
Bst6I	CTCTTC	1 cut(s)	958
BstBAI	YACGTR	2 cut(s)	332, 831
BstBI	TTCGAA	1 cut(s)	269
BstC8I	GCNNGC	3 cut(s)	378, 1025, 1126
BstDEI	CTNAG	3 cut(s)	50, 504, 723
BstF5I	GGATG	2 cut(s)	307, 1198
BstH2I	RGCGCY	1 cut(s)	18
BstHHI	GCGC	2 cut(s)	17, 382
BstKTI	GATC	3 cut(s)	973, 1056, 1132
BstMAI	GTCTC	5 cut(s)	111, 614, 614, 670, 768
BstMBI	GATC	3 cut(s)	970, 1053, 1129
BstMWI	GCNNNNNNNGC	2 cut(s)	21, 905
BstNI	CCWGG	1 cut(s)	64
BstNSI	RCATGY	3 cut(s)	380, 512, 665
BstPAI	GACNNNNGTC	1 cut(s)	606
BstSCI	CCNGG	2 cut(s)	62, 1178
BstSFI	CTRYAG	1 cut(s)	743
BstSNI	TACGTA	1 cut(s)	831
BstV1I	GCAGC	3 cut(s)	27, 66, 763
BstV2I	GAAGAC	1 cut(s)	162
BtgZI	GCGATG	1 cut(s)	21
BtsCI	GGATG	2 cut(s)	307, 1198
BtsI	GCAGTG	1 cut(s)	752
BtsIMutI	CAGTG	3 cut(s)	261, 752, 1196
Cac8I	GCNNGC	3 cut(s)	378, 1025, 1126
CaiI	CAGNNNCTG	1 cut(s)	751
CciI	TCATGA	1 cut(s)	178
CfoI	GCGC	2 cut(s)	17, 382
Csp6I	GTAC	1 cut(s)	67
CviAII	CATG	8 cut(s)	140, 179, 377, 509, 589, 662, 767, 1006
CviQI	GTAC	1 cut(s)	67
DdeI	CTNAG	3 cut(s)	50, 504, 723
DpnI	GATC	3 cut(s)	972, 1055, 1131
DpnII	GATC	3 cut(s)	970, 1053, 1129
DraIII	CACNNNGTG	1 cut(s)	26
Eam1104I	CTCTTC	1 cut(s)	958
EarI	CTCTTC	1 cut(s)	958
EciI	GGCGGA	1 cut(s)	1205
Eco105I	TACGTA	1 cut(s)	831
Eco31I	GGTCTC	1 cut(s)	768
Eco57I	CTGAAG	1 cut(s)	329
EcoRII	CCWGG	1 cut(s)	62
Esp3I	CGTCTC	2 cut(s)	111, 614
FaeI	CATG	8 cut(s)	143, 182, 380, 512, 592, 665, 770, 1009
FalI	AAGNNNNNCTT	2 cut(s)	447, 479
FatI	CATG	8 cut(s)	139, 178, 376, 508, 588, 661, 766, 1005
Fnu4HI	GCNGC	3 cut(s)	41, 55, 777
FokI	GGATG	2 cut(s)	314, 1205
Fsp4HI	GCNGC	3 cut(s)	41, 55, 777
FspBI	CTAG	1 cut(s)	959
GlaI	GCGC	2 cut(s)	16, 381
GluI	GCNGC	3 cut(s)	41, 55, 777
GsuI	CTGGAG	1 cut(s)	1220
HaeII	RGCGCY	1 cut(s)	18
HapII	CCGG	1 cut(s)	1180
HhaI	GCGC	2 cut(s)	17, 382
Hin1II	CATG	8 cut(s)	143, 182, 380, 512, 592, 665, 770, 1009
Hin6I	GCGC	2 cut(s)	15, 380
HinP1I	GCGC	2 cut(s)	15, 380
HinfI	GANTC	3 cut(s)	266, 284, 816
HpaII	CCGG	1 cut(s)	1180
HphI	GGTGA	5 cut(s)	74, 84, 191, 464, 887
Hpy166II	GTNNAC	1 cut(s)	1096
Hpy188I	TCNGA	4 cut(s)	348, 689, 732, 975
Hpy188III	TCNNGA	6 cut(s)	179, 611, 667, 923, 950, 1105
Hpy8I	GTNNAC	1 cut(s)	1096
Hpy99I	CGWCG	1 cut(s)	323
HpyAV	CCTTC	6 cut(s)	95, 198, 271, 349, 796, 1003
HpyCH4III	ACNGT	1 cut(s)	625
HpyCH4IV	ACGT	3 cut(s)	331, 607, 830
HpyCH4V	TGCA	8 cut(s)	422, 574, 745, 779, 932, 986, 1049, 1196
HpyF10VI	GCNNNNNNNGC	2 cut(s)	21, 905
HpyF3I	CTNAG	3 cut(s)	50, 504, 723
HpySE526I	ACGT	3 cut(s)	331, 607, 830
Hsp92II	CATG	8 cut(s)	143, 182, 380, 512, 592, 665, 770, 1009
HspAI	GCGC	2 cut(s)	15, 380
Kzo9I	GATC	3 cut(s)	970, 1053, 1129
LguI	GCTCTTC	1 cut(s)	958
LmnI	GCTCC	1 cut(s)	594
Lsp1109I	GCAGC	3 cut(s)	27, 66, 763
LweI	GCATC	3 cut(s)	561, 973, 1183
MaeI	CTAG	1 cut(s)	959
MaeII	ACGT	3 cut(s)	331, 607, 830
MaeIII	GTNAC	2 cut(s)	216, 941
MalI	GATC	3 cut(s)	972, 1055, 1131
MboI	GATC	3 cut(s)	970, 1053, 1129
MboII	GAAGA	7 cut(s)	93, 162, 165, 188, 335, 561, 975
MmeI	TCCRAC	1 cut(s)	690
MnlI	CCTC	8 cut(s)	252, 431, 542, 585, 645, 879, 946, 1220
MseI	TTAA	8 cut(s)	123, 311, 474, 486, 561, 792, 1173, 1220
MslI	CAYNNNNRTG	1 cut(s)	144
MspA1I	CMGCKG	1 cut(s)	760
MspI	CCGG	1 cut(s)	1180
MspR9I	CCNGG	2 cut(s)	64, 1180
MvaI	CCWGG	1 cut(s)	64
MwoI	GCNNNNNNNGC	2 cut(s)	21, 905
NciI	CCSGG	1 cut(s)	1180
NdeII	GATC	3 cut(s)	970, 1053, 1129
NlaIII	CATG	8 cut(s)	143, 182, 380, 512, 592, 665, 770, 1009
NlaIV	GGNNCC	1 cut(s)	596
NmeAIII	GCCGAG	1 cut(s)	674
NspI	RCATGY	3 cut(s)	380, 512, 665
NspV	TTCGAA	1 cut(s)	269
PaeI	GCATGC	1 cut(s)	380
PagI	TCATGA	1 cut(s)	178
PciI	ACATGT	1 cut(s)	661
PciSI	GCTCTTC	1 cut(s)	958
PfeI	GAWTC	3 cut(s)	266, 284, 816
PflFI	GACNNNGTC	1 cut(s)	625
PkrI	GCNGC	3 cut(s)	42, 56, 778
Ppu21I	YACGTR	2 cut(s)	332, 831
PscI	ACATGT	1 cut(s)	661
PshAI	GACNNNNGTC	1 cut(s)	606
Psp6I	CCWGG	1 cut(s)	62
PspGI	CCWGG	1 cut(s)	62
PspN4I	GGNNCC	1 cut(s)	596
PstI	CTGCAG	1 cut(s)	747
PstNI	CAGNNNCTG	1 cut(s)	751
PsyI	GACNNNGTC	1 cut(s)	625
RsaI	GTAC	1 cut(s)	68
RsaNI	GTAC	1 cut(s)	67
RseI	CAYNNNNRTG	1 cut(s)	144
SapI	GCTCTTC	1 cut(s)	958
SaqAI	TTAA	8 cut(s)	123, 311, 474, 486, 561, 792, 1173, 1220
SatI	GCNGC	3 cut(s)	41, 55, 777
Sau3AI	GATC	3 cut(s)	970, 1053, 1129
ScrFI	CCNGG	2 cut(s)	64, 1180
SfaNI	GCATC	3 cut(s)	561, 973, 1183
SfcI	CTRYAG	1 cut(s)	743
SfuI	TTCGAA	1 cut(s)	269
SmiMI	CAYNNNNRTG	1 cut(s)	144
SmlI	CTYRAG	1 cut(s)	950
SmoI	CTYRAG	1 cut(s)	950
SnaBI	TACGTA	1 cut(s)	831
SphI	GCATGC	1 cut(s)	380
SsiI	CCGC	3 cut(s)	450, 760, 1190
SspI	AATATT	1 cut(s)	1081
SspMI	CTAG	1 cut(s)	959
StyD4I	CCNGG	2 cut(s)	62, 1178
TaaI	ACNGT	1 cut(s)	625
TaiI	ACGT	3 cut(s)	334, 610, 833
TaqI	TCGA	8 cut(s)	269, 384, 612, 629, 668, 857, 1115, 1225
TfiI	GAWTC	3 cut(s)	266, 284, 816
Tru1I	TTAA	8 cut(s)	123, 311, 474, 486, 561, 792, 1173, 1220
Tru9I	TTAA	8 cut(s)	123, 311, 474, 486, 561, 792, 1173, 1220
TscAI	CASTG	3 cut(s)	268, 752, 1203
TseI	GCWGC	3 cut(s)	40, 54, 776
TspDTI	ATGAA	6 cut(s)	77, 156, 503, 1022, 1054, 1101
TspRI	CASTG	3 cut(s)	268, 752, 1203
Tth111I	GACNNNGTC	1 cut(s)	625
XapI	RAATTY	3 cut(s)	152, 234, 781
XceI	RCATGY	3 cut(s)	380, 512, 665
XspI	CTAG	1 cut(s)	959

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.