Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001315

Physical Location & Seq

Genomic Coordinates Forward (+)

32235122 .. 32235586

Gene Structure 465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG294600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGTCGAGTAATGGTTGTGATCCAAATGTTGATACTTATACCAAATTGATTGCTGGTTTCCTTACAGCCCGGAAAGCGGCAGATGCACTGGAGATGTTTGATGAGATGTTAAGTCGAGGATTTGTTCATACGATGGGGACTATAACCTCTTCTATGGAAGCCTTATGTAGCTATGGTCCACCATATGCTGCTATGATGATCTACCAGAAAGCAAGAAAGGTCGGATGTAGAATATCATTGACTGCTTATAAGCTATTGCTTATGCGCCTTTCTAGATTTGGTAAATGTGGAATGTTGCTAAATATTTGGGATGAGATGCAGGAATGTGGTTATGCTTCTGATATCGAAGTTTATGAGTATGCAATCAGTGGACTTTGCAACATAGGGCAGCTTGAAAATACTGTACTTGTCATGGAAGAGTCTCTACGAAAAGGTTTTTGCCCAAGCATACCTATAGCAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

154

Amino Acids

17.07

Weight (kDa)

5.41

Isoelectric Point (pI)

32.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	4 - 36	4.3e-06	PPR repeat
PPR_2	PF13041	8 - 56	3.9e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43820
fragaria_vesca	FvH4_5g24880 FvH4_5g25350 FvH4_5g25520
malus_domestica	MD16G1284000.v1.1
prunus_persica	Prupe.5G009500_v2.0.a1
pyrus_communis	pycom16g26010
rosa_chinensis	RchiOBHm_Chr6g0271861 RchiOBHm_Chr6g0271871 RchiOBHm_Chr6g0271981 RchiOBHm_Chr7g0215761 RchiOBHm_Chr7g0215771 RchiOBHm_Chr7g0215901 RchiOBHm_Chr7g0217231 RchiOBHm_Chr7g0219831
rosa_laevigata	RLG00000002611 RLG00000002625 RLG00000013566
rosa_multiflora	Rmu_sc0000055.1_g000008 Rmu_sc0000055.1_g000009 Rmu_sc0000516.1_g000005 Rmu_sc0000516.1_g000006 Rmu_sc0004379.1_g000016 Rmu_sc0006240.1_g000009 Rmu_sc0007857.1_g000006 Rmu_sc0016364.1_g000002 Rmu_sc0016407.1_g000001 Rmu_sc0023052.1_g000001
rosa_roxburghii	Rroxscaffold_2G00114980 Rroxscaffold_3G00243850 Rroxscaffold_5G00342010 Rroxscaffold_7G00186190
rosa_rugosa	Rorug06G0064100 Rorug07G0156600 Rorug07G0157900 Rorug07G0158000
rosa_samantha	Rh1BG116200 Rh6AG181800 Rh6BG185400 Rh6CG182900 Rh6CG183200 Rh6DG174300 Rh6DG174600 Rh7AG294600 Rh7AG306400 Rh7AG306500 Rh7BG286400 Rh7CG314600 Rh7CG325500 Rh7DG296900 Rh7DG299400 Rh7DG306200
rosa_wichuraiana	Rw6G015640 Rw7G026030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	249
AciI	CCGC	1 cut(s)	77
AclWI	GGATC	1 cut(s)	14
AfaI	GTAC	1 cut(s)	405
AfiI	CCNNNNNNNGG	1 cut(s)	76
AgsI	TTSAA	1 cut(s)	395
AluBI	AGCT	3 cut(s)	171, 253, 391
AluI	AGCT	3 cut(s)	171, 253, 391
Alw26I	GTCTC	1 cut(s)	426
AlwI	GGATC	1 cut(s)	14
ApeKI	GCWGC	2 cut(s)	188, 388
AspLEI	GCGC	1 cut(s)	267
AspS9I	GGNCC	1 cut(s)	176
AsuC2I	CCSGG	1 cut(s)	70
AvaII	GGWCC	1 cut(s)	176
BarI	GAAGNNNNNNTAC	2 cut(s)	408, 440
BbvI	GCAGC	2 cut(s)	175, 400
BccI	CCATC	1 cut(s)	127
BcnI	CCSGG	1 cut(s)	70
BcoDI	GTCTC	1 cut(s)	426
BfaI	CTAG	1 cut(s)	273
BfmI	CTRYAG	1 cut(s)	453
BisI	GCNGC	3 cut(s)	78, 189, 389
BlsI	GCNGC	3 cut(s)	79, 190, 390
Bme1390I	CCNGG	1 cut(s)	70
Bme18I	GGWCC	1 cut(s)	176
BmgT120I	GGNCC	1 cut(s)	176
BmrFI	CCNGG	1 cut(s)	70
BmsI	GCATC	2 cut(s)	73, 306
BpmI	CTGGAG	1 cut(s)	110
BpuMI	CCSGG	1 cut(s)	70
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
Bse1I	ACTGG	1 cut(s)	93
BseGI	GGATG	2 cut(s)	230, 316
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseNI	ACTGG	1 cut(s)	93
BseXI	GCAGC	2 cut(s)	175, 400
BsiSI	CCGG	1 cut(s)	70
BslFI	GGGAC	1 cut(s)	151
BslI	CCNNNNNNNGG	1 cut(s)	76
BsmAI	GTCTC	1 cut(s)	426
BsmFI	GGGAC	1 cut(s)	151
Bsp143I	GATC	2 cut(s)	19, 198
BspACI	CCGC	1 cut(s)	77
BspPI	GGATC	1 cut(s)	14
BsrI	ACTGG	1 cut(s)	93
BssMI	GATC	2 cut(s)	19, 198
Bst4CI	ACNGT	1 cut(s)	403
Bst6I	CTCTTC	2 cut(s)	154, 411
BstF5I	GGATG	2 cut(s)	230, 316
BstHHI	GCGC	1 cut(s)	267
BstKTI	GATC	2 cut(s)	22, 201
BstMAI	GTCTC	1 cut(s)	426
BstMBI	GATC	2 cut(s)	19, 198
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 83
BstSCI	CCNGG	1 cut(s)	68
BstSFI	CTRYAG	1 cut(s)	453
BstV1I	GCAGC	2 cut(s)	175, 400
BtsCI	GGATG	2 cut(s)	230, 316
BtsIMutI	CAGTG	2 cut(s)	86, 373
CfoI	GCGC	1 cut(s)	267
Cfr13I	GGNCC	1 cut(s)	176
Csp6I	GTAC	1 cut(s)	404
CviAII	CATG	1 cut(s)	412
CviJI	RGCY	5 cut(s)	68, 161, 171, 253, 391
CviKI_1	RGCY	5 cut(s)	68, 161, 171, 253, 391
CviQI	GTAC	1 cut(s)	404
DpnI	GATC	2 cut(s)	21, 200
DpnII	GATC	2 cut(s)	19, 198
Eam1104I	CTCTTC	2 cut(s)	154, 411
EarI	CTCTTC	2 cut(s)	154, 411
Eco32I	GATATC	1 cut(s)	343
Eco47I	GGWCC	1 cut(s)	176
EcoRV	GATATC	1 cut(s)	343
FaeI	CATG	1 cut(s)	415
FaqI	GGGAC	1 cut(s)	151
FatI	CATG	1 cut(s)	411
FauNDI	CATATG	1 cut(s)	184
Fnu4HI	GCNGC	3 cut(s)	78, 189, 389
FokI	GGATG	2 cut(s)	237, 323
Fsp4HI	GCNGC	3 cut(s)	78, 189, 389
FspBI	CTAG	1 cut(s)	273
GlaI	GCGC	1 cut(s)	266
GluI	GCNGC	3 cut(s)	78, 189, 389
GsuI	CTGGAG	1 cut(s)	110
HapII	CCGG	1 cut(s)	70
HhaI	GCGC	1 cut(s)	267
Hin1II	CATG	1 cut(s)	415
Hin6I	GCGC	1 cut(s)	265
HinP1I	GCGC	1 cut(s)	265
HinfI	GANTC	1 cut(s)	419
HpaII	CCGG	1 cut(s)	70
Hpy166II	GTNNAC	2 cut(s)	179, 371
Hpy188I	TCNGA	2 cut(s)	224, 340
Hpy188III	TCNNGA	1 cut(s)	273
Hpy8I	GTNNAC	2 cut(s)	179, 371
HpyCH4III	ACNGT	1 cut(s)	403
HpyCH4V	TGCA	4 cut(s)	86, 319, 362, 378
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 83
Hsp92II	CATG	1 cut(s)	415
HspAI	GCGC	1 cut(s)	265
Kzo9I	GATC	2 cut(s)	19, 198
LpnPI	CCDG	5 cut(s)	39, 74, 83, 218, 305
Lsp1109I	GCAGC	2 cut(s)	175, 400
LweI	GCATC	2 cut(s)	73, 306
MaeI	CTAG	1 cut(s)	273
MalI	GATC	2 cut(s)	21, 200
MboI	GATC	2 cut(s)	19, 198
MboII	GAAGA	2 cut(s)	141, 428
MluCI	AATT	1 cut(s)	44
MlyI	GAGTC	1 cut(s)	428
MmeI	TCCRAC	1 cut(s)	202
MnlI	CCTC	2 cut(s)	110, 157
MseI	TTAA	1 cut(s)	110
MspI	CCGG	1 cut(s)	70
MspR9I	CCNGG	1 cut(s)	70
MwoI	GCNNNNNNNGC	2 cut(s)	74, 83
NciI	CCSGG	1 cut(s)	70
NdeI	CATATG	1 cut(s)	184
NdeII	GATC	2 cut(s)	19, 198
NlaIII	CATG	1 cut(s)	415
PkrI	GCNGC	3 cut(s)	79, 190, 390
PleI	GAGTC	1 cut(s)	427
PpsI	GAGTC	1 cut(s)	427
PsiI	TTATAA	1 cut(s)	249
PspPI	GGNCC	1 cut(s)	176
RsaI	GTAC	1 cut(s)	405
RsaNI	GTAC	1 cut(s)	404
SaqAI	TTAA	1 cut(s)	110
SatI	GCNGC	3 cut(s)	78, 189, 389
Sau3AI	GATC	2 cut(s)	19, 198
Sau96I	GGNCC	1 cut(s)	176
SchI	GAGTC	1 cut(s)	428
ScrFI	CCNGG	1 cut(s)	70
SetI	ASST	7 cut(s)	149, 173, 222, 255, 393, 436, 454
SfaNI	GCATC	2 cut(s)	73, 306
SfcI	CTRYAG	1 cut(s)	453
SinI	GGWCC	1 cut(s)	176
Sse9I	AATT	1 cut(s)	44
SsiI	CCGC	1 cut(s)	77
SspI	AATATT	1 cut(s)	304
SspMI	CTAG	1 cut(s)	273
StyD4I	CCNGG	1 cut(s)	68
TaaI	ACNGT	1 cut(s)	403
TaqI	TCGA	3 cut(s)	5, 115, 345
TasI	AATT	1 cut(s)	44
TatI	WGTACW	1 cut(s)	403
TauI	GCSGC	1 cut(s)	80
Tru1I	TTAA	1 cut(s)	110
Tru9I	TTAA	1 cut(s)	110
TscAI	CASTG	2 cut(s)	93, 373
TseI	GCWGC	2 cut(s)	188, 388
TspDTI	ATGAA	1 cut(s)	116
TspRI	CASTG	2 cut(s)	93, 373
VpaK11BI	GGWCC	1 cut(s)	176
XbaI	TCTAGA	1 cut(s)	272
XspI	CTAG	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.