Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001315

Physical Location & Seq

Genomic Coordinates Forward (+)

33570275 .. 33592848

Gene Structure 22574 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG314600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGTCGAGTAATGGTTGTGATCCAAATGTTGATACTTATACCAAATTGATTGCTGGTTTCCTTACAGCCCGGAAAGCGGCAGATGCACTGGAGATGTTTGATGAGATGTTAAGTCGAGGATTTGTTCATACGATGGGGACTATAACCTCTTCTATGGAAGCCTTATGTAGCTATGGTCCACCATATGCTGCTATGATGATCTACCAGAAAGCAAGAAAGGTCGGATGTAGAATATCATTGACTGCTTATAAGCTATTGCTTATGCGCCTTTCTAGATTTGGTAAATGTGGAATGTTGCTAAATATTTGGGATGAGATGCAGGAATGTGGTTATGCTTCTGATATCGAAGTTTATGAGTATGCAATCAGTGGACTTTGCAACATAGGGCAGCTTGAAAATACTGTACTTGTCATGGAAGAGTCTCTACGAAAAGGACATTGTATTAGAGATTGGTTTGATAATGGAGCTGACATTTTATCAGTCGTTGCCTACGCCAGTTTACTTTCCTTGGAAAACCAGAACAACCTTGTGGCCTTAGAATCGGAGCAGTCAGTCTTTAAAGAAGAGGATGGTATTAGGGCTATCAGTCACGAGGAGGTCGAGGATGCGGATAGCTGCCGGTGGTTTGCTAAGTTGCAAAGGCCCTCCAAGCCCCCCAAGGTGGTCGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

223

Amino Acids

24.93

Weight (kDa)

4.99

Isoelectric Point (pI)

40.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	4 - 36	7.7e-06	PPR repeat
PPR_2	PF13041	8 - 56	7.5e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43820
fragaria_vesca	FvH4_5g24880 FvH4_5g25350 FvH4_5g25520
malus_domestica	MD16G1284000.v1.1
prunus_persica	Prupe.5G009500_v2.0.a1
pyrus_communis	pycom16g26010
rosa_chinensis	RchiOBHm_Chr6g0271861 RchiOBHm_Chr6g0271871 RchiOBHm_Chr6g0271981 RchiOBHm_Chr7g0215761 RchiOBHm_Chr7g0215771 RchiOBHm_Chr7g0215901 RchiOBHm_Chr7g0217231 RchiOBHm_Chr7g0219831
rosa_laevigata	RLG00000002611 RLG00000002625 RLG00000013566
rosa_multiflora	Rmu_sc0000055.1_g000008 Rmu_sc0000055.1_g000009 Rmu_sc0000516.1_g000005 Rmu_sc0000516.1_g000006 Rmu_sc0004379.1_g000016 Rmu_sc0006240.1_g000009 Rmu_sc0007857.1_g000006 Rmu_sc0016364.1_g000002 Rmu_sc0016407.1_g000001 Rmu_sc0023052.1_g000001
rosa_roxburghii	Rroxscaffold_2G00114980 Rroxscaffold_3G00243850 Rroxscaffold_5G00342010 Rroxscaffold_7G00186190
rosa_rugosa	Rorug06G0064100 Rorug07G0156600 Rorug07G0157900 Rorug07G0158000
rosa_samantha	Rh1BG116200 Rh6AG181800 Rh6BG185400 Rh6CG182900 Rh6CG183200 Rh6DG174300 Rh6DG174600 Rh7AG294600 Rh7AG306400 Rh7AG306500 Rh7BG286400 Rh7CG314600 Rh7CG325500 Rh7DG296900 Rh7DG299400 Rh7DG306200
rosa_wichuraiana	Rw6G015640 Rw7G026030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	249
AciI	CCGC	2 cut(s)	77, 608
AclWI	GGATC	1 cut(s)	14
AfaI	GTAC	1 cut(s)	405
AfiI	CCNNNNNNNGG	2 cut(s)	76, 661
AgsI	TTSAA	1 cut(s)	395
AluBI	AGCT	5 cut(s)	171, 253, 391, 467, 615
AluI	AGCT	5 cut(s)	171, 253, 391, 467, 615
Alw26I	GTCTC	1 cut(s)	426
AlwI	GGATC	1 cut(s)	14
AoxI	GGCC	2 cut(s)	531, 641
ApeKI	GCWGC	3 cut(s)	188, 388, 615
AspLEI	GCGC	1 cut(s)	267
AspS9I	GGNCC	2 cut(s)	176, 642
AsuC2I	CCSGG	1 cut(s)	70
AvaII	GGWCC	1 cut(s)	176
BarI	GAAGNNNNNNTAC	2 cut(s)	408, 440
BauI	CACGAG	1 cut(s)	590
BbvI	GCAGC	3 cut(s)	175, 400, 602
BccI	CCATC	2 cut(s)	127, 563
BcnI	CCSGG	1 cut(s)	70
BcoDI	GTCTC	1 cut(s)	426
BfaI	CTAG	1 cut(s)	273
BisI	GCNGC	4 cut(s)	78, 189, 389, 616
BlsI	GCNGC	4 cut(s)	79, 190, 390, 617
Bme1390I	CCNGG	1 cut(s)	70
Bme18I	GGWCC	1 cut(s)	176
BmgT120I	GGNCC	2 cut(s)	176, 642
BmrFI	CCNGG	1 cut(s)	70
BmsI	GCATC	3 cut(s)	73, 306, 595
BpmI	CTGGAG	1 cut(s)	110
BpuMI	CCSGG	1 cut(s)	70
BsaJI	CCNNGG	2 cut(s)	507, 657
Bsc4I	CCNNNNNNNGG	2 cut(s)	76, 661
Bse118I	RCCGGY	1 cut(s)	618
Bse1I	ACTGG	2 cut(s)	93, 495
BseDI	CCNNGG	2 cut(s)	507, 657
BseGI	GGATG	4 cut(s)	230, 316, 574, 610
BseLI	CCNNNNNNNGG	2 cut(s)	76, 661
BseNI	ACTGG	2 cut(s)	93, 495
BseRI	GAGGAG	1 cut(s)	608
BseXI	GCAGC	3 cut(s)	175, 400, 602
BshFI	GGCC	2 cut(s)	533, 643
BsiSI	CCGG	2 cut(s)	70, 619
BslFI	GGGAC	1 cut(s)	151
BslI	CCNNNNNNNGG	2 cut(s)	76, 661
BsmAI	GTCTC	1 cut(s)	426
BsmFI	GGGAC	1 cut(s)	151
BsnI	GGCC	2 cut(s)	533, 643
Bsp143I	GATC	2 cut(s)	19, 198
BspACI	CCGC	2 cut(s)	77, 608
BspANI	GGCC	2 cut(s)	533, 643
BspPI	GGATC	1 cut(s)	14
BsrFI	RCCGGY	1 cut(s)	618
BsrI	ACTGG	2 cut(s)	93, 495
BssAI	RCCGGY	1 cut(s)	618
BssECI	CCNNGG	2 cut(s)	507, 657
BssMI	GATC	2 cut(s)	19, 198
BssSI	CACGAG	1 cut(s)	590
BssT1I	CCWWGG	2 cut(s)	507, 657
Bst2BI	CACGAG	1 cut(s)	590
Bst4CI	ACNGT	1 cut(s)	403
Bst6I	CTCTTC	3 cut(s)	154, 411, 558
BstDEI	CTNAG	2 cut(s)	535, 630
BstF5I	GGATG	4 cut(s)	230, 316, 574, 610
BstHHI	GCGC	1 cut(s)	267
BstKTI	GATC	2 cut(s)	22, 201
BstMAI	GTCTC	1 cut(s)	426
BstMBI	GATC	2 cut(s)	19, 198
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 83, 649
BstSCI	CCNGG	1 cut(s)	68
BstV1I	GCAGC	3 cut(s)	175, 400, 602
BsuRI	GGCC	2 cut(s)	533, 643
BtsCI	GGATG	4 cut(s)	230, 316, 574, 610
BtsIMutI	CAGTG	2 cut(s)	86, 373
CfoI	GCGC	1 cut(s)	267
Cfr10I	RCCGGY	1 cut(s)	618
Cfr13I	GGNCC	2 cut(s)	176, 642
Csp6I	GTAC	1 cut(s)	404
CviAII	CATG	1 cut(s)	412
CviQI	GTAC	1 cut(s)	404
DdeI	CTNAG	2 cut(s)	535, 630
DpnI	GATC	2 cut(s)	21, 200
DpnII	GATC	2 cut(s)	19, 198
DraI	TTTAAA	1 cut(s)	559
Eam1104I	CTCTTC	3 cut(s)	154, 411, 558
EarI	CTCTTC	3 cut(s)	154, 411, 558
Eco130I	CCWWGG	2 cut(s)	507, 657
Eco32I	GATATC	1 cut(s)	343
Eco47I	GGWCC	1 cut(s)	176
EcoO109I	RGGNCCY	1 cut(s)	642
EcoRV	GATATC	1 cut(s)	343
EcoT14I	CCWWGG	2 cut(s)	507, 657
ErhI	CCWWGG	2 cut(s)	507, 657
FaeI	CATG	1 cut(s)	415
FaqI	GGGAC	1 cut(s)	151
FatI	CATG	1 cut(s)	411
FauNDI	CATATG	1 cut(s)	184
Fnu4HI	GCNGC	4 cut(s)	78, 189, 389, 616
FokI	GGATG	4 cut(s)	237, 323, 581, 617
Fsp4HI	GCNGC	4 cut(s)	78, 189, 389, 616
FspBI	CTAG	1 cut(s)	273
GlaI	GCGC	1 cut(s)	266
GluI	GCNGC	4 cut(s)	78, 189, 389, 616
GsuI	CTGGAG	1 cut(s)	110
HaeIII	GGCC	2 cut(s)	533, 643
HapII	CCGG	2 cut(s)	70, 619
HhaI	GCGC	1 cut(s)	267
Hin1II	CATG	1 cut(s)	415
Hin6I	GCGC	1 cut(s)	265
HinP1I	GCGC	1 cut(s)	265
HinfI	GANTC	2 cut(s)	419, 539
HpaII	CCGG	2 cut(s)	70, 619
Hpy166II	GTNNAC	3 cut(s)	179, 371, 500
Hpy188I	TCNGA	3 cut(s)	224, 340, 544
Hpy188III	TCNNGA	2 cut(s)	273, 590
Hpy8I	GTNNAC	3 cut(s)	179, 371, 500
HpyCH4III	ACNGT	1 cut(s)	403
HpyCH4V	TGCA	5 cut(s)	86, 319, 362, 378, 637
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 83, 649
HpyF3I	CTNAG	2 cut(s)	535, 630
Hsp92II	CATG	1 cut(s)	415
HspAI	GCGC	1 cut(s)	265
Kzo9I	GATC	2 cut(s)	19, 198
LmnI	GCTCC	2 cut(s)	464, 544
LpnPI	CCDG	8 cut(s)	39, 74, 83, 218, 305, 508, 530, 632
Lsp1109I	GCAGC	3 cut(s)	175, 400, 602
LweI	GCATC	3 cut(s)	73, 306, 595
MaeI	CTAG	1 cut(s)	273
MaeIII	GTNAC	1 cut(s)	587
MalI	GATC	2 cut(s)	21, 200
MboI	GATC	2 cut(s)	19, 198
MboII	GAAGA	3 cut(s)	141, 428, 575
MluCI	AATT	1 cut(s)	44
MlyI	GAGTC	1 cut(s)	428
MmeI	TCCRAC	1 cut(s)	202
MnlI	CCTC	7 cut(s)	110, 157, 559, 586, 589, 595, 655
MseI	TTAA	2 cut(s)	110, 558
MspI	CCGG	2 cut(s)	70, 619
MspR9I	CCNGG	1 cut(s)	70
MwoI	GCNNNNNNNGC	3 cut(s)	74, 83, 649
NciI	CCSGG	1 cut(s)	70
NdeI	CATATG	1 cut(s)	184
NdeII	GATC	2 cut(s)	19, 198
NlaIII	CATG	1 cut(s)	415
NmuCI	GTSAC	1 cut(s)	587
PcsI	WCGNNNNNNNCGW	1 cut(s)	597
PfeI	GAWTC	1 cut(s)	539
PkrI	GCNGC	4 cut(s)	79, 190, 390, 617
PleI	GAGTC	1 cut(s)	427
PpsI	GAGTC	1 cut(s)	427
PsiI	TTATAA	1 cut(s)	249
PspPI	GGNCC	2 cut(s)	176, 642
RsaI	GTAC	1 cut(s)	405
RsaNI	GTAC	1 cut(s)	404
SaqAI	TTAA	2 cut(s)	110, 558
SatI	GCNGC	4 cut(s)	78, 189, 389, 616
Sau3AI	GATC	2 cut(s)	19, 198
Sau96I	GGNCC	2 cut(s)	176, 642
SchI	GAGTC	1 cut(s)	428
ScrFI	CCNGG	1 cut(s)	70
SfaNI	GCATC	3 cut(s)	73, 306, 595
SinI	GGWCC	1 cut(s)	176
Sse9I	AATT	1 cut(s)	44
SsiI	CCGC	2 cut(s)	77, 608
SspI	AATATT	1 cut(s)	304
SspMI	CTAG	1 cut(s)	273
StyD4I	CCNGG	1 cut(s)	68
StyI	CCWWGG	2 cut(s)	507, 657
TaaI	ACNGT	1 cut(s)	403
TaqI	TCGA	4 cut(s)	5, 115, 345, 600
TasI	AATT	1 cut(s)	44
TatI	WGTACW	1 cut(s)	403
TauI	GCSGC	1 cut(s)	80
TfiI	GAWTC	1 cut(s)	539
Tru1I	TTAA	2 cut(s)	110, 558
Tru9I	TTAA	2 cut(s)	110, 558
TscAI	CASTG	2 cut(s)	93, 373
TseFI	GTSAC	1 cut(s)	587
TseI	GCWGC	3 cut(s)	188, 388, 615
Tsp45I	GTSAC	1 cut(s)	587
TspDTI	ATGAA	1 cut(s)	116
TspRI	CASTG	2 cut(s)	93, 373
VpaK11BI	GGWCC	1 cut(s)	176
XbaI	TCTAGA	1 cut(s)	272
XspI	CTAG	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.