Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007857.1

Orthogroup ID

OG0001315

Physical Location & Seq

Genomic Coordinates Reverse (-)

11483 .. 18224

Gene Structure 6742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007857.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

atggtgaggactttggaagcaatggtagcagatgggtttagtcctgatagtgcaactttcagttacattcttgagggtctaggaagagctgatcggattgacgatgcagttgagatttttgagagcatgaaggggaaaggttgcgtgccagacaccattacatacaatgcaatgatctctaactttatctctgttgcgaatattgatgaatgtgtaaactacttcaagagtatgtcgagtaatgcttgcgatccaaatgttgatacttataccaaattgattgctggtttccttaaagcccggaaagcggcggatgcactggagatgtttgatgagatgttaagtcgagaatttgttcctactacggggactataacctcttttatggaacccttatgtagctatggtccaccatatgctgctatgatgaactaccagaaagcaagaaaggtcggatgtagaatatcattgactgcttataagctattgcttatgcgcctttctagatttggtaaatgtggaatgttgctaaacatttgggaagagatgcaggaatgtggttatgcttctgatatcgaagtttatgagtatgtaatcagtggactttgcaacattgggcagcttgaaaatgctgtacttgtcatggaagactctctacgaaaagccctgcccctacagcctactaccgcacgccctgcacacctgcgcagccacctgcacaacacccaagctagcctacctctcgcaagactaccgcctgcctcccttccgcgtgctgctgcacggccgacctacccaactcgcctcctctcacccatcagccctacacccggctgtctagctgctgcccctgtaagccttagtcggagctccctgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

292

Amino Acids

32.02

Weight (kDa)

6.33

Isoelectric Point (pI)

45.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43820
fragaria_vesca	FvH4_5g24880 FvH4_5g25350 FvH4_5g25520
malus_domestica	MD16G1284000.v1.1
prunus_persica	Prupe.5G009500_v2.0.a1
pyrus_communis	pycom16g26010
rosa_chinensis	RchiOBHm_Chr6g0271861 RchiOBHm_Chr6g0271871 RchiOBHm_Chr6g0271981 RchiOBHm_Chr7g0215761 RchiOBHm_Chr7g0215771 RchiOBHm_Chr7g0215901 RchiOBHm_Chr7g0217231 RchiOBHm_Chr7g0219831
rosa_laevigata	RLG00000002611 RLG00000002625 RLG00000013566
rosa_multiflora	Rmu_sc0000055.1_g000008 Rmu_sc0000055.1_g000009 Rmu_sc0000516.1_g000005 Rmu_sc0000516.1_g000006 Rmu_sc0004379.1_g000016 Rmu_sc0006240.1_g000009 Rmu_sc0007857.1_g000006 Rmu_sc0016364.1_g000002 Rmu_sc0016407.1_g000001 Rmu_sc0023052.1_g000001
rosa_roxburghii	Rroxscaffold_2G00114980 Rroxscaffold_3G00243850 Rroxscaffold_5G00342010 Rroxscaffold_7G00186190
rosa_rugosa	Rorug06G0064100 Rorug07G0156600 Rorug07G0157900 Rorug07G0158000
rosa_samantha	Rh1BG116200 Rh6AG181800 Rh6BG185400 Rh6CG182900 Rh6CG183200 Rh6DG174300 Rh6DG174600 Rh7AG294600 Rh7AG306400 Rh7AG306500 Rh7BG286400 Rh7CG314600 Rh7CG325500 Rh7DG296900 Rh7DG299400 Rh7DG306200
rosa_wichuraiana	Rw6G015640 Rw7G026030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	480
AarI	CACCTGC	2 cut(s)	711, 723
Acc16I	TGCGCA	1 cut(s)	707
Acc36I	ACCTGC	2 cut(s)	711, 723
AccII	CGCG	1 cut(s)	772
AciI	CCGC	5 cut(s)	308, 311, 687, 755, 770
AclWI	GGATC	1 cut(s)	245
AcoI	YGGCCR	1 cut(s)	785
AcsI	RAATTY	1 cut(s)	350
AfaI	GTAC	1 cut(s)	636
AfiI	CCNNNNNNNGG	3 cut(s)	307, 365, 830
AgsI	TTSAA	2 cut(s)	226, 626
AluBI	AGCT	7 cut(s)	89, 402, 484, 622, 731, 842, 870
AluI	AGCT	7 cut(s)	89, 402, 484, 622, 731, 842, 870
Alw21I	GWGCWC	1 cut(s)	872
AlwI	GGATC	1 cut(s)	245
AoxI	GGCC	1 cut(s)	785
ApeKI	GCWGC	7 cut(s)	419, 619, 708, 776, 779, 842, 845
ApoI	RAATTY	1 cut(s)	350
Asp700I	GAANNNNTTC	1 cut(s)	354
AspLEI	GCGC	2 cut(s)	498, 708
AspS9I	GGNCC	1 cut(s)	407
AsuC2I	CCSGG	2 cut(s)	301, 831
AsuHPI	GGTGA	2 cut(s)	16, 804
AsuNHI	GCTAGC	1 cut(s)	731
AvaII	GGWCC	1 cut(s)	407
BanII	GRGCYC	1 cut(s)	872
BarI	GAAGNNNNNNTAC	2 cut(s)	639, 671
BbsI	GAAGAC	1 cut(s)	654
Bbv12I	GWGCWC	1 cut(s)	872
BbvI	GCAGC	7 cut(s)	406, 631, 720, 763, 766, 829, 832
BccI	CCATC	2 cut(s)	26, 824
BceAI	ACGGC	1 cut(s)	800
BcnI	CCSGG	2 cut(s)	301, 831
BfaI	CTAG	4 cut(s)	80, 504, 732, 839
BfmI	CTRYAG	2 cut(s)	674, 875
BfuAI	ACCTGC	2 cut(s)	711, 723
BisI	GCNGC	8 cut(s)	309, 420, 620, 709, 777, 780, 843, 846
BlsI	GCNGC	8 cut(s)	310, 421, 621, 710, 778, 781, 844, 847
Bme1390I	CCNGG	2 cut(s)	301, 831
Bme18I	GGWCC	1 cut(s)	407
BmgT120I	GGNCC	1 cut(s)	407
BmiI	GGNNCC	1 cut(s)	390
BmrFI	CCNGG	2 cut(s)	301, 831
BmsI	GCATC	3 cut(s)	94, 304, 537
BmtI	GCTAGC	1 cut(s)	735
BpiI	GAAGAC	1 cut(s)	654
BpmI	CTGGAG	1 cut(s)	341
BpuEI	CTTGAG	1 cut(s)	92
BpuMI	CCSGG	2 cut(s)	301, 831
Bsc4I	CCNNNNNNNGG	3 cut(s)	307, 365, 830
Bse1I	ACTGG	1 cut(s)	324
Bse3DI	GCAATG	2 cut(s)	27, 177
BseGI	GGATG	2 cut(s)	319, 461
BseLI	CCNNNNNNNGG	3 cut(s)	307, 365, 830
BseMI	GCAATG	2 cut(s)	27, 177
BseNI	ACTGG	1 cut(s)	324
BseRI	GAGGAG	1 cut(s)	797
BseX3I	CGGCCG	1 cut(s)	785
BseXI	GCAGC	7 cut(s)	406, 631, 720, 763, 766, 829, 832
BsgI	GTGCAG	3 cut(s)	681, 701, 765
Bsh1236I	CGCG	1 cut(s)	772
Bsh1285I	CGRYCG	1 cut(s)	788
BshFI	GGCC	1 cut(s)	787
BsiEI	CGRYCG	1 cut(s)	788
BsiHKAI	GWGCWC	1 cut(s)	872
BsiSI	CCGG	2 cut(s)	301, 831
BslFI	GGGAC	1 cut(s)	382
BslI	CCNNNNNNNGG	3 cut(s)	307, 365, 830
BsmFI	GGGAC	1 cut(s)	382
BsnI	GGCC	1 cut(s)	787
Bsp1286I	GDGCHC	1 cut(s)	872
Bsp143I	GATC	3 cut(s)	91, 174, 250
BspACI	CCGC	5 cut(s)	308, 311, 687, 755, 770
BspANI	GGCC	1 cut(s)	787
BspFNI	CGCG	1 cut(s)	772
BspLI	GGNNCC	1 cut(s)	390
BspMI	ACCTGC	2 cut(s)	711, 723
BspOI	GCTAGC	1 cut(s)	735
BspPI	GGATC	1 cut(s)	245
BspQI	GCTCTTC	1 cut(s)	79
BsrDI	GCAATG	2 cut(s)	27, 177
BsrI	ACTGG	1 cut(s)	324
BssMI	GATC	3 cut(s)	91, 174, 250
Bst6I	CTCTTC	2 cut(s)	79, 537
BstAPI	GCANNNNNTGC	1 cut(s)	695
BstC8I	GCNNGC	6 cut(s)	146, 247, 691, 733, 759, 774
BstDEI	CTNAG	1 cut(s)	860
BstF5I	GGATG	2 cut(s)	319, 461
BstFNI	CGCG	1 cut(s)	772
BstHHI	GCGC	2 cut(s)	498, 708
BstKTI	GATC	3 cut(s)	94, 177, 253
BstMBI	GATC	3 cut(s)	91, 174, 250
BstMCI	CGRYCG	1 cut(s)	788
BstMWI	GCNNNNNNNGC	5 cut(s)	26, 305, 314, 676, 695
BstSCI	CCNGG	2 cut(s)	299, 829
BstSFI	CTRYAG	2 cut(s)	674, 875
BstUI	CGCG	1 cut(s)	772
BstV1I	GCAGC	7 cut(s)	406, 631, 720, 763, 766, 829, 832
BstV2I	GAAGAC	1 cut(s)	654
BstZI	CGGCCG	1 cut(s)	785
BsuRI	GGCC	1 cut(s)	787
BtsCI	GGATG	2 cut(s)	319, 461
BtsIMutI	CAGTG	2 cut(s)	317, 604
BveI	ACCTGC	2 cut(s)	711, 723
Cac8I	GCNNGC	6 cut(s)	146, 247, 691, 733, 759, 774
CfoI	GCGC	2 cut(s)	498, 708
Cfr13I	GGNCC	1 cut(s)	407
Csp6I	GTAC	1 cut(s)	635
CviAII	CATG	2 cut(s)	127, 643
CviQI	GTAC	1 cut(s)	635
DdeI	CTNAG	1 cut(s)	860
DpnI	GATC	3 cut(s)	93, 176, 252
DpnII	GATC	3 cut(s)	91, 174, 250
EaeI	YGGCCR	1 cut(s)	785
EagI	CGGCCG	1 cut(s)	785
Eam1104I	CTCTTC	2 cut(s)	79, 537
EarI	CTCTTC	2 cut(s)	79, 537
EciI	GGCGGA	1 cut(s)	326
Ecl136II	GAGCTC	1 cut(s)	870
EclXI	CGGCCG	1 cut(s)	785
Eco24I	GRGCYC	1 cut(s)	872
Eco32I	GATATC	1 cut(s)	574
Eco47I	GGWCC	1 cut(s)	407
Eco52I	CGGCCG	1 cut(s)	785
Eco53kI	GAGCTC	1 cut(s)	870
EcoICRI	GAGCTC	1 cut(s)	870
EcoRV	GATATC	1 cut(s)	574
EcoT38I	GRGCYC	1 cut(s)	872
FaeI	CATG	2 cut(s)	130, 646
FaqI	GGGAC	1 cut(s)	382
FatI	CATG	2 cut(s)	126, 642
FauNDI	CATATG	1 cut(s)	415
Fnu4HI	GCNGC	8 cut(s)	309, 420, 620, 709, 777, 780, 843, 846
FokI	GGATG	2 cut(s)	326, 468
FriOI	GRGCYC	1 cut(s)	872
Fsp4HI	GCNGC	8 cut(s)	309, 420, 620, 709, 777, 780, 843, 846
FspBI	CTAG	4 cut(s)	80, 504, 732, 839
FspI	TGCGCA	1 cut(s)	707
GlaI	GCGC	2 cut(s)	497, 707
GluI	GCNGC	8 cut(s)	309, 420, 620, 709, 777, 780, 843, 846
GsuI	CTGGAG	1 cut(s)	341
HaeIII	GGCC	1 cut(s)	787
HapII	CCGG	2 cut(s)	301, 831
HhaI	GCGC	2 cut(s)	498, 708
Hin1II	CATG	2 cut(s)	130, 646
Hin6I	GCGC	2 cut(s)	496, 706
HinP1I	GCGC	2 cut(s)	496, 706
HinfI	GANTC	1 cut(s)	650
HpaII	CCGG	2 cut(s)	301, 831
HphI	GGTGA	2 cut(s)	16, 804
Hpy166II	GTNNAC	3 cut(s)	217, 410, 602
Hpy188I	TCNGA	4 cut(s)	96, 455, 571, 867
Hpy188III	TCNNGA	5 cut(s)	44, 71, 226, 347, 504
Hpy8I	GTNNAC	3 cut(s)	217, 410, 602
HpyAV	CCTTC	2 cut(s)	124, 776
HpyCH4V	TGCA	9 cut(s)	53, 107, 170, 317, 550, 609, 698, 718, 782
HpyF10VI	GCNNNNNNNGC	5 cut(s)	26, 305, 314, 676, 695
HpyF3I	CTNAG	1 cut(s)	860
Hsp92II	CATG	2 cut(s)	130, 646
HspAI	GCGC	2 cut(s)	496, 706
Kzo9I	GATC	3 cut(s)	91, 174, 250
LguI	GCTCTTC	1 cut(s)	79
LmnI	GCTCC	2 cut(s)	867, 875
Lsp1109I	GCAGC	7 cut(s)	406, 631, 720, 763, 766, 829, 832
LweI	GCATC	3 cut(s)	94, 304, 537
MaeI	CTAG	4 cut(s)	80, 504, 732, 839
MaeIII	GTNAC	1 cut(s)	62
MalI	GATC	3 cut(s)	93, 176, 252
MboI	GATC	3 cut(s)	91, 174, 250
MboII	GAAGA	3 cut(s)	96, 554, 659
MhlI	GDGCHC	1 cut(s)	872
MluCI	AATT	2 cut(s)	275, 350
MlyI	GAGTC	1 cut(s)	644
MmeI	TCCRAC	2 cut(s)	433, 845
MnlI	CCTC	6 cut(s)	67, 388, 750, 772, 815, 818
MroXI	GAANNNNTTC	1 cut(s)	354
MseI	TTAA	2 cut(s)	294, 341
MspI	CCGG	2 cut(s)	301, 831
MspR9I	CCNGG	2 cut(s)	301, 831
MvnI	CGCG	1 cut(s)	772
MwoI	GCNNNNNNNGC	5 cut(s)	26, 305, 314, 676, 695
NciI	CCSGG	2 cut(s)	301, 831
NdeI	CATATG	1 cut(s)	415
NdeII	GATC	3 cut(s)	91, 174, 250
NheI	GCTAGC	1 cut(s)	731
NlaIII	CATG	2 cut(s)	130, 646
NlaIV	GGNNCC	1 cut(s)	390
NsbI	TGCGCA	1 cut(s)	707
PaqCI	CACCTGC	2 cut(s)	711, 723
PciSI	GCTCTTC	1 cut(s)	79
PdmI	GAANNNNTTC	1 cut(s)	354
PkrI	GCNGC	8 cut(s)	310, 421, 621, 710, 778, 781, 844, 847
PleI	GAGTC	1 cut(s)	644
PpsI	GAGTC	1 cut(s)	644
PsiI	TTATAA	1 cut(s)	480
Psp124BI	GAGCTC	1 cut(s)	872
PspN4I	GGNNCC	1 cut(s)	390
PspPI	GGNCC	1 cut(s)	407
RsaI	GTAC	1 cut(s)	636
RsaNI	GTAC	1 cut(s)	635
SacI	GAGCTC	1 cut(s)	872
SapI	GCTCTTC	1 cut(s)	79
SaqAI	TTAA	2 cut(s)	294, 341
SatI	GCNGC	8 cut(s)	309, 420, 620, 709, 777, 780, 843, 846
Sau3AI	GATC	3 cut(s)	91, 174, 250
Sau96I	GGNCC	1 cut(s)	407
SchI	GAGTC	1 cut(s)	644
ScrFI	CCNGG	2 cut(s)	301, 831
SduI	GDGCHC	1 cut(s)	872
SfaNI	GCATC	3 cut(s)	94, 304, 537
SfcI	CTRYAG	2 cut(s)	674, 875
SinI	GGWCC	1 cut(s)	407
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
Sse9I	AATT	2 cut(s)	275, 350
SsiI	CCGC	5 cut(s)	308, 311, 687, 755, 770
SspI	AATATT	1 cut(s)	202
SspMI	CTAG	4 cut(s)	80, 504, 732, 839
SstI	GAGCTC	1 cut(s)	872
StyD4I	CCNGG	2 cut(s)	299, 829
TaqI	TCGA	3 cut(s)	236, 346, 576
TasI	AATT	2 cut(s)	275, 350
TatI	WGTACW	1 cut(s)	634
TauI	GCSGC	1 cut(s)	311
Tru1I	TTAA	2 cut(s)	294, 341
Tru9I	TTAA	2 cut(s)	294, 341
TscAI	CASTG	2 cut(s)	324, 604
TseI	GCWGC	7 cut(s)	419, 619, 708, 776, 779, 842, 845
TspDTI	ATGAA	3 cut(s)	143, 222, 443
TspRI	CASTG	2 cut(s)	324, 604
VpaK11BI	GGWCC	1 cut(s)	407
XapI	RAATTY	1 cut(s)	350
XbaI	TCTAGA	1 cut(s)	503
XmnI	GAANNNNTTC	1 cut(s)	354
XspI	CTAG	4 cut(s)	80, 504, 732, 839

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.