Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001315

Physical Location & Seq

Genomic Coordinates Forward (+)

32026798 .. 32028707

Gene Structure 1910 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24397

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1650 bp

ATGGCATTTCAGGGCACTTCACGCCGTGTCCTATCATCGCTGCCATCTCTCAGCAGCAGAGCCAGGTACTACCCAATGCTTCACCTTCATTCACCAATTTCTTCGTCTCTCTTTTCAACTCTTAATGCTCAATCCCAACATGAATATGTCAAATTCAATCCCAACCAGTCTTCTTCTCATGACGAACCTTTTGTTCTTCACCAGCTCTCTGTTCTGTTACCAATCCCCCATCAAATTTTACCTCCAAAACAATTTGACCCCACTGATTCGAATAAGAAGGTAGAATCTGTTAGGGCTGTGGATGGGTTTTTAATGCCCGACGAGAAATTACGTGGGGTTTTTCTTCAGAAATTGAAGGGTATAGCTGTAATTGAGCATGCGCTCGACAATGTTGGTGTGGATTTGAGCGTTGATGTTGTTGCACAAGTAGTGAATAGAGGTTGTTTAGGCGGTGAAGCAATGCTTGTGTTTTTTAATTGGGCGATTAAGAAGCCAAATGTAGCTAAGCATGTTCATACATACCATATAATCCTCAAAGCATTGGGTAGAAGAAAGTTCTTTAATTATATGATGGAAGTTTTGAATGGCATGAGGAGCCAAGACATACGTCTCGATTTGGAGACTGTGTCGATTGTGATGGATAGTTTTGTGAGGGCTGGACATGTCTCGAAAGTAATCCAAGTGTTCCGAAACTCGGCAGAGTTTGGGTTGGATTGCGATACTGAGTGTCTGAATGTGCTTCTGCAGTGTCTGTGGGAAGTGCGATTCAATGGCACTACGTATAACATTGTTATTGGTGGGTGGTCGAAATATGGTAGAGTTGGTGAGATGGAGAGGACTTTGGAAGCAATGGTAGCAGATGGGTTTAGTCCTGATAGTGCAACTTTCAGTTACATTCTTGAGGGTCTAGGAAGAGCTGATCGGATTGACGATGCAGTTGAGATTTTTGAGAGCATGAAGGGGAAAGGTTGCGTGCCAGACAACATTACATACAATGCAATGATCTCTAACTTCATCTCTGTTGCGAATATTGATGAATGTGTAAACTACTTCAAGAGTATGTCGAGTAATGCTTGCGATCCAAATGTTGATACTTATACCAAATTGATTGCTGGTTTCCTTAAAGCCCGGAAAGTGGCGGATGCACTGGAGATGTTTGATGAGATGTTAAGTCGAGGATTTGTTCCTACTACGGGGACTATAACCTCTTTTATGGAACCCCTATGTAGCTATGGTCAACCATATGCTGCTATGATGATCTACCAGAAAGCAAGAAAGGTCGGATGTAGAATATCATTGACTGCTTATAAGCTATTGCTTATGCGCCTTTCTAGATTTGGTAAATGTGGAATGTTGCTAAACATTTGGGAAGAGATGCAGGAATGTGGATATGCTTCTGATATCGAAGTTTATGAGTATGTAATCAGTGGACTTTGCAACATTGGGCAGCTTGAAAATGCTGTACTTGTCATGGAAGAGTCTCTACAAAAAGGTTTTTGCCCAAGCAGGCTTACCTATAGCAAACTAAGTAACAAACTTCTTGCTTCAAATAAGTTAGAGAGGGCTTATAAGCTATACTTGAAGATTAAAGCTGGTTGTCGTTTTGACAAGACACAGAGAATTTGGCGTGCTAGGGGATGGCATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

549

Amino Acids

61.94

Weight (kDa)

8.51

Isoelectric Point (pI)

39.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	260 - 304	6.3e-08	PPR repeat family
PPR_3	PF13812	281 - 337	1.5e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	287 - 320	3.1e-06	PPR repeat
PPR_2	PF13041	299 - 338	1.6e-09	PPR repeat family
PPR_long	PF17177	307 - 406	3.3e-08	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	329 - 375	4.9e-09	PPR repeat family
PPR_1	PF12854	359 - 389	1.2e-06	PPR repeat
PPR_2	PF13041	361 - 409	1.4e-10	PPR repeat family
PPR	PF01535	365 - 394	7.6e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43820
fragaria_vesca	FvH4_5g24880 FvH4_5g25350 FvH4_5g25520
malus_domestica	MD16G1284000.v1.1
prunus_persica	Prupe.5G009500_v2.0.a1
pyrus_communis	pycom16g26010
rosa_chinensis	RchiOBHm_Chr6g0271861 RchiOBHm_Chr6g0271871 RchiOBHm_Chr6g0271981 RchiOBHm_Chr7g0215761 RchiOBHm_Chr7g0215771 RchiOBHm_Chr7g0215901 RchiOBHm_Chr7g0217231 RchiOBHm_Chr7g0219831
rosa_laevigata	RLG00000002611 RLG00000002625 RLG00000013566
rosa_multiflora	Rmu_sc0000055.1_g000008 Rmu_sc0000055.1_g000009 Rmu_sc0000516.1_g000005 Rmu_sc0000516.1_g000006 Rmu_sc0004379.1_g000016 Rmu_sc0006240.1_g000009 Rmu_sc0007857.1_g000006 Rmu_sc0016364.1_g000002 Rmu_sc0016407.1_g000001 Rmu_sc0023052.1_g000001
rosa_roxburghii	Rroxscaffold_2G00114980 Rroxscaffold_3G00243850 Rroxscaffold_5G00342010 Rroxscaffold_7G00186190
rosa_rugosa	Rorug06G0064100 Rorug07G0156600 Rorug07G0157900 Rorug07G0158000
rosa_samantha	Rh1BG116200 Rh6AG181800 Rh6BG185400 Rh6CG182900 Rh6CG183200 Rh6DG174300 Rh6DG174600 Rh7AG294600 Rh7AG306400 Rh7AG306500 Rh7BG286400 Rh7CG314600 Rh7CG325500 Rh7DG296900 Rh7DG299400 Rh7DG306200
rosa_wichuraiana	Rw6G015640 Rw7G026030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1308, 1569
AciI	CCGC	2 cut(s)	450, 1139
AclWI	GGATC	1 cut(s)	1073
AcsI	RAATTY	3 cut(s)	152, 234, 1620
AcuI	CTGAAG	1 cut(s)	329
AdeI	CACNNNGTG	1 cut(s)	26
AfaI	GTAC	2 cut(s)	68, 1464
AfiI	CCNNNNNNNGG	3 cut(s)	694, 1135, 1193
AflIII	ACRYGT	1 cut(s)	661
AgsI	TTSAA	9 cut(s)	117, 157, 355, 583, 769, 1054, 1454, 1548, 1582
AjnI	CCWGG	1 cut(s)	62
AluBI	AGCT	9 cut(s)	205, 365, 503, 917, 1230, 1312, 1450, 1573, 1592
AluI	AGCT	9 cut(s)	205, 365, 503, 917, 1230, 1312, 1450, 1573, 1592
Alw26I	GTCTC	5 cut(s)	111, 614, 614, 670, 1485
AlwI	GGATC	1 cut(s)	1073
AlwNI	CAGNNNCTG	1 cut(s)	751
ApeKI	GCWGC	4 cut(s)	40, 54, 1247, 1447
ApoI	RAATTY	3 cut(s)	152, 234, 1620
ArsI	GACNNNNNNTTYG	2 cut(s)	173, 205
AspLEI	GCGC	2 cut(s)	382, 1326
AsuC2I	CCSGG	1 cut(s)	1129
AsuHPI	GGTGA	5 cut(s)	74, 84, 191, 464, 836
AsuII	TTCGAA	1 cut(s)	269
BaeGI	GKGCMC	1 cut(s)	17
BarI	GAAGNNNNNNTAC	2 cut(s)	1467, 1499
BbsI	GAAGAC	1 cut(s)	162
BbvI	GCAGC	4 cut(s)	27, 66, 1234, 1459
BccI	CCATC	8 cut(s)	52, 237, 296, 565, 631, 823, 854, 1632
BceAI	ACGGC	1 cut(s)	9
BciT130I	CCWGG	1 cut(s)	64
BcnI	CCSGG	1 cut(s)	1129
BcoDI	GTCTC	5 cut(s)	111, 614, 614, 670, 1485
BfaI	CTAG	3 cut(s)	908, 1332, 1632
BfmI	CTRYAG	2 cut(s)	743, 1516
BisI	GCNGC	4 cut(s)	41, 55, 1248, 1448
BlpI	GCTNAGC	1 cut(s)	504
BlsI	GCNGC	4 cut(s)	42, 56, 1249, 1449
Bme1390I	CCNGG	2 cut(s)	64, 1129
BmiI	GGNNCC	2 cut(s)	596, 1218
BmrFI	CCNGG	2 cut(s)	64, 1129
BmsI	GCATC	3 cut(s)	922, 1132, 1365
BoxI	GACNNNNGTC	1 cut(s)	606
BpiI	GAAGAC	1 cut(s)	162
BpmI	CTGGAG	1 cut(s)	1169
Bpu1102I	GCTNAGC	1 cut(s)	504
Bpu14I	TTCGAA	1 cut(s)	269
BpuEI	CTTGAG	1 cut(s)	920
BpuMI	CCSGG	1 cut(s)	1129
BsaAI	YACGTR	2 cut(s)	332, 780
BsaXI	ACNNNNNCTCC	2 cut(s)	611, 641
Bsc4I	CCNNNNNNNGG	3 cut(s)	694, 1135, 1193
Bse1I	ACTGG	2 cut(s)	166, 1152
Bse3DI	GCAATG	3 cut(s)	465, 855, 1005
BseBI	CCWGG	1 cut(s)	64
BseGI	GGATG	4 cut(s)	307, 1147, 1289, 1643
BseLI	CCNNNNNNNGG	3 cut(s)	694, 1135, 1193
BseMI	GCAATG	3 cut(s)	465, 855, 1005
BseMII	CTCAG	2 cut(s)	64, 714
BseNI	ACTGG	2 cut(s)	166, 1152
BseRI	GAGGAG	1 cut(s)	607
BseSI	GKGCMC	1 cut(s)	17
BseXI	GCAGC	4 cut(s)	27, 66, 1234, 1459
BsiSI	CCGG	1 cut(s)	1129
BslFI	GGGAC	1 cut(s)	1210
BslI	CCNNNNNNNGG	3 cut(s)	694, 1135, 1193
BsmAI	GTCTC	5 cut(s)	111, 614, 614, 670, 1485
BsmBI	CGTCTC	2 cut(s)	111, 614
BsmFI	GGGAC	1 cut(s)	1210
Bsp119I	TTCGAA	1 cut(s)	269
Bsp1286I	GDGCHC	1 cut(s)	17
Bsp143I	GATC	4 cut(s)	919, 1002, 1078, 1257
Bsp1720I	GCTNAGC	1 cut(s)	504
BspACI	CCGC	2 cut(s)	450, 1139
BspCNI	CTCAG	2 cut(s)	63, 715
BspHI	TCATGA	1 cut(s)	178
BspLI	GGNNCC	2 cut(s)	596, 1218
BspMAI	CTGCAG	1 cut(s)	747
BspPI	GGATC	1 cut(s)	1073
BspQI	GCTCTTC	1 cut(s)	907
BspT104I	TTCGAA	1 cut(s)	269
BsrDI	GCAATG	3 cut(s)	465, 855, 1005
BsrI	ACTGG	2 cut(s)	166, 1152
BssMI	GATC	4 cut(s)	919, 1002, 1078, 1257
Bst2UI	CCWGG	1 cut(s)	64
Bst4CI	ACNGT	1 cut(s)	625
Bst6I	CTCTTC	3 cut(s)	907, 1365, 1470
BstBAI	YACGTR	2 cut(s)	332, 780
BstBI	TTCGAA	1 cut(s)	269
BstC8I	GCNNGC	5 cut(s)	378, 974, 1075, 1508, 1629
BstDEI	CTNAG	4 cut(s)	50, 504, 723, 1526
BstF5I	GGATG	4 cut(s)	307, 1147, 1289, 1643
BstHHI	GCGC	2 cut(s)	382, 1326
BstKTI	GATC	4 cut(s)	922, 1005, 1081, 1260
BstMAI	GTCTC	5 cut(s)	111, 614, 614, 670, 1485
BstMBI	GATC	4 cut(s)	919, 1002, 1078, 1257
BstMWI	GCNNNNNNNGC	3 cut(s)	21, 594, 854
BstNI	CCWGG	1 cut(s)	64
BstNSI	RCATGY	3 cut(s)	380, 512, 665
BstPAI	GACNNNNGTC	1 cut(s)	606
BstSCI	CCNGG	2 cut(s)	62, 1127
BstSFI	CTRYAG	2 cut(s)	743, 1516
BstSLI	GKGCMC	1 cut(s)	17
BstSNI	TACGTA	1 cut(s)	780
BstV1I	GCAGC	4 cut(s)	27, 66, 1234, 1459
BstV2I	GAAGAC	1 cut(s)	162
BtgZI	GCGATG	1 cut(s)	21
BtsCI	GGATG	4 cut(s)	307, 1147, 1289, 1643
BtsI	GCAGTG	1 cut(s)	752
BtsIMutI	CAGTG	4 cut(s)	261, 752, 1145, 1432
Cac8I	GCNNGC	5 cut(s)	378, 974, 1075, 1508, 1629
CaiI	CAGNNNCTG	1 cut(s)	751
CciI	TCATGA	1 cut(s)	178
CfoI	GCGC	2 cut(s)	382, 1326
Csp6I	GTAC	2 cut(s)	67, 1463
CviAII	CATG	8 cut(s)	140, 179, 377, 509, 589, 662, 955, 1471
CviQI	GTAC	2 cut(s)	67, 1463
DdeI	CTNAG	4 cut(s)	50, 504, 723, 1526
DpnI	GATC	4 cut(s)	921, 1004, 1080, 1259
DpnII	GATC	4 cut(s)	919, 1002, 1078, 1257
DraIII	CACNNNGTG	1 cut(s)	26
Eam1104I	CTCTTC	3 cut(s)	907, 1365, 1470
EarI	CTCTTC	3 cut(s)	907, 1365, 1470
EciI	GGCGGA	1 cut(s)	1154
Eco105I	TACGTA	1 cut(s)	780
Eco32I	GATATC	1 cut(s)	1402
Eco57I	CTGAAG	1 cut(s)	329
EcoRII	CCWGG	1 cut(s)	62
EcoRV	GATATC	1 cut(s)	1402
Esp3I	CGTCTC	2 cut(s)	111, 614
FaeI	CATG	8 cut(s)	143, 182, 380, 512, 592, 665, 958, 1474
FalI	AAGNNNNNCTT	4 cut(s)	447, 479, 1562, 1594
FaqI	GGGAC	1 cut(s)	1210
FatI	CATG	8 cut(s)	139, 178, 376, 508, 588, 661, 954, 1470
FauNDI	CATATG	1 cut(s)	1243
Fnu4HI	GCNGC	4 cut(s)	41, 55, 1248, 1448
FokI	GGATG	3 cut(s)	314, 1154, 1296
Fsp4HI	GCNGC	4 cut(s)	41, 55, 1248, 1448
FspBI	CTAG	3 cut(s)	908, 1332, 1632
GlaI	GCGC	2 cut(s)	381, 1325
GluI	GCNGC	4 cut(s)	41, 55, 1248, 1448
GsuI	CTGGAG	1 cut(s)	1169
HapII	CCGG	1 cut(s)	1129
HhaI	GCGC	2 cut(s)	382, 1326
Hin1II	CATG	8 cut(s)	143, 182, 380, 512, 592, 665, 958, 1474
Hin6I	GCGC	2 cut(s)	380, 1324
HinP1I	GCGC	2 cut(s)	380, 1324
HincII	GTYRAC	1 cut(s)	1238
HindII	GTYRAC	1 cut(s)	1238
HinfI	GANTC	4 cut(s)	266, 284, 765, 1478
HpaII	CCGG	1 cut(s)	1129
HphI	GGTGA	5 cut(s)	74, 84, 191, 464, 836
Hpy166II	GTNNAC	3 cut(s)	1045, 1238, 1430
Hpy188I	TCNGA	7 cut(s)	348, 689, 732, 924, 1283, 1399, 1649
Hpy188III	TCNNGA	7 cut(s)	179, 611, 667, 872, 899, 1054, 1332
Hpy8I	GTNNAC	3 cut(s)	1045, 1238, 1430
Hpy99I	CGWCG	1 cut(s)	323
HpyAV	CCTTC	4 cut(s)	95, 271, 349, 952
HpyCH4III	ACNGT	1 cut(s)	625
HpyCH4IV	ACGT	3 cut(s)	331, 607, 779
HpyCH4V	TGCA	8 cut(s)	422, 745, 881, 935, 998, 1145, 1378, 1437
HpyF10VI	GCNNNNNNNGC	3 cut(s)	21, 594, 854
HpyF3I	CTNAG	4 cut(s)	50, 504, 723, 1526
HpySE526I	ACGT	3 cut(s)	331, 607, 779
Hsp92II	CATG	8 cut(s)	143, 182, 380, 512, 592, 665, 958, 1474
HspAI	GCGC	2 cut(s)	380, 1324
Kzo9I	GATC	4 cut(s)	919, 1002, 1078, 1257
LguI	GCTCTTC	1 cut(s)	907
LmnI	GCTCC	1 cut(s)	594
Lsp1109I	GCAGC	4 cut(s)	27, 66, 1234, 1459
LweI	GCATC	3 cut(s)	922, 1132, 1365
MaeI	CTAG	3 cut(s)	908, 1332, 1632
MaeII	ACGT	3 cut(s)	331, 607, 779
MaeIII	GTNAC	3 cut(s)	216, 890, 1529
MalI	GATC	4 cut(s)	921, 1004, 1080, 1259
MboI	GATC	4 cut(s)	919, 1002, 1078, 1257
MhlI	GDGCHC	1 cut(s)	17
MlyI	GAGTC	1 cut(s)	1487
MmeI	TCCRAC	2 cut(s)	690, 1261
MseI	TTAA	8 cut(s)	123, 311, 474, 486, 561, 1122, 1169, 1587
MslI	CAYNNNNRTG	1 cut(s)	144
MspI	CCGG	1 cut(s)	1129
MspR9I	CCNGG	2 cut(s)	64, 1129
MvaI	CCWGG	1 cut(s)	64
MwoI	GCNNNNNNNGC	3 cut(s)	21, 594, 854
NciI	CCSGG	1 cut(s)	1129
NdeI	CATATG	1 cut(s)	1243
NdeII	GATC	4 cut(s)	919, 1002, 1078, 1257
NlaIII	CATG	8 cut(s)	143, 182, 380, 512, 592, 665, 958, 1474
NlaIV	GGNNCC	2 cut(s)	596, 1218
NmeAIII	GCCGAG	1 cut(s)	674
NspI	RCATGY	3 cut(s)	380, 512, 665
NspV	TTCGAA	1 cut(s)	269
PaeI	GCATGC	1 cut(s)	380
PagI	TCATGA	1 cut(s)	178
PciI	ACATGT	1 cut(s)	661
PciSI	GCTCTTC	1 cut(s)	907
PfeI	GAWTC	3 cut(s)	266, 284, 765
PflFI	GACNNNGTC	1 cut(s)	625
PkrI	GCNGC	4 cut(s)	42, 56, 1249, 1449
PleI	GAGTC	1 cut(s)	1486
PpsI	GAGTC	1 cut(s)	1486
Ppu21I	YACGTR	2 cut(s)	332, 780
PscI	ACATGT	1 cut(s)	661
PshAI	GACNNNNGTC	1 cut(s)	606
PsiI	TTATAA	2 cut(s)	1308, 1569
Psp6I	CCWGG	1 cut(s)	62
PspGI	CCWGG	1 cut(s)	62
PspN4I	GGNNCC	2 cut(s)	596, 1218
PstI	CTGCAG	1 cut(s)	747
PstNI	CAGNNNCTG	1 cut(s)	751
PsyI	GACNNNGTC	1 cut(s)	625
RsaI	GTAC	2 cut(s)	68, 1464
RsaNI	GTAC	2 cut(s)	67, 1463
RseI	CAYNNNNRTG	1 cut(s)	144
SapI	GCTCTTC	1 cut(s)	907
SaqAI	TTAA	8 cut(s)	123, 311, 474, 486, 561, 1122, 1169, 1587
SatI	GCNGC	4 cut(s)	41, 55, 1248, 1448
Sau3AI	GATC	4 cut(s)	919, 1002, 1078, 1257
SchI	GAGTC	1 cut(s)	1487
ScrFI	CCNGG	2 cut(s)	64, 1129
SduI	GDGCHC	1 cut(s)	17
SfaNI	GCATC	3 cut(s)	922, 1132, 1365
SfcI	CTRYAG	2 cut(s)	743, 1516
SfuI	TTCGAA	1 cut(s)	269
SmiMI	CAYNNNNRTG	1 cut(s)	144
SmlI	CTYRAG	1 cut(s)	899
SmoI	CTYRAG	1 cut(s)	899
SnaBI	TACGTA	1 cut(s)	780
SphI	GCATGC	1 cut(s)	380
SsiI	CCGC	2 cut(s)	450, 1139
SspI	AATATT	1 cut(s)	1030
SspMI	CTAG	3 cut(s)	908, 1332, 1632
StyD4I	CCNGG	2 cut(s)	62, 1127
TaaI	ACNGT	1 cut(s)	625
TaiI	ACGT	3 cut(s)	334, 610, 782
TaqI	TCGA	9 cut(s)	269, 384, 612, 629, 668, 806, 1064, 1174, 1404
TatI	WGTACW	1 cut(s)	1462
TfiI	GAWTC	3 cut(s)	266, 284, 765
Tru1I	TTAA	8 cut(s)	123, 311, 474, 486, 561, 1122, 1169, 1587
Tru9I	TTAA	8 cut(s)	123, 311, 474, 486, 561, 1122, 1169, 1587
TscAI	CASTG	4 cut(s)	268, 752, 1152, 1432
TseI	GCWGC	4 cut(s)	40, 54, 1247, 1447
TspDTI	ATGAA	6 cut(s)	77, 156, 503, 971, 1003, 1050
TspRI	CASTG	4 cut(s)	268, 752, 1152, 1432
Tth111I	GACNNNGTC	1 cut(s)	625
XapI	RAATTY	3 cut(s)	152, 234, 1620
XbaI	TCTAGA	1 cut(s)	1331
XceI	RCATGY	3 cut(s)	380, 512, 665
XspI	CTAG	3 cut(s)	908, 1332, 1632

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.