Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0001315

Physical Location & Seq

Genomic Coordinates Forward (+)

40234282 .. 40237700

Gene Structure 3419 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1284000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1689 bp

ATGGCGTTTCACGGTGCTTTGCAATCGCTGCGATCGCTCAGCAGGGGCCCATCCACCAGGTATTCTTTCCCTTACCTTCCTTCCCCAATTTCATCATCTCTCTTCTCAGCTCTTTATGCTCAATCCAATGCGTTGCATGATGACCGTCCGATCAACAACCAATCTAGTCCCCACGAACGATTTGTTCTTGATCAACTCTCTAATCTGTTACCAGTTCCTCTTAATAATTCGGCTCCGAAACCATTGGAACCGAGTAATTCGGAGAAGCAGATAAATGTTAGGGCCCCTGACGGTTTCTTGTTGCCGGATGAGAAACTGCGTGGTGTTTTTCTTCAGAAATTGAGGGGTACAACTGCAATTGAGCATGCTTTGGACAATGTTGGTGTCGATTTGAGTGTTGATGTTGTTGCACAGGTAGTGAATAGAGGGAATTTAAGCAGCGAAGCGATGCTTATGTTCTTTAATTGGGTGACTAAGAAGCCCGCCATAGCGAAAGATATCCACACGTATCACATAATCCTCAAAGCATTAGGCAGAAGAAAGTTCTTTACACATATGATGCACATTATGCATAACATGAGGGCTCGAGGGATAAGTCCCGATTTAGAGACCATATCGATTGTAATGGATAGTTTCGTGAGGGCTGGATATGTGTCCAAGGCAATTCGAGTGTTCAGAAACTTGGAAGAAGTTGGTTTGGATTGTGATACTGAGTCTTTGAATATGCTTGTACAGTGTTTGTGCCAGCGGTCTCATGTAGGTGCTGCAAATTCATTTCTCAATTCCATCAAGGGGAAGATACAATTCAATGGTACTACGTATAATATTGTCATTGGTGGATGGTCAAGAAATGGAAGAGTTAGTGAAATGGTGAGGATTTTGGAAGCAATGGTTGCAGATGGGTTCAGTCCCGATAATTCAACATTCAGTTTCATTATTGAGGGTTTAGGGAGAGCTGGTCGGATTGATGATGCTGTTGAGATATTTGATAGCATGAAGACAAAAGGTTGTGTGCCAGACGCCAGAGCTTATAATGCCATGATTTCAAACTTTATCTCTGTTAGAGGGTTTGATGAATGTCGGAAGTACTATAAGGGTATGCCAAGTAATAATTGTGATCCAAATATTGATACTTATACCAAATTAATTGATGCTTTCCTTAAAGCCCGGAAAGTGGCTGATGCTCTTGAAACGTTTGATGAGATGTTAGGTCGAGGTTTTCTTCCCAGTACAGGGACAATAACCTCCTTTATTGAACCCTTATGTAGCTACGGTCCACCCTATGCTGCGATGATGATCTACCAGAAGGCAAGAAAGGTTGGATGCAGAGTATCATCGAGTGCTTATAAGCTATTGCTTATGCGACTTTCTAGGTTTGGCAAATGTGGAATGTTGCTAAACATTTGGGAGGATATGCAAGAATGCGGATATGATTCGGATATGGAAGTTTATGATTATGTAATTAATGGACTTTGCAACAATGGGCAGCTTGAAAGTGCTGTACTTGTCATGGAAGAGTCTGTGCAGAAAGGTTTTTGCCCAAGCAGGCTTATTTATAGCAAACTAAATAGCAAACTACTTGCTTCAAATAAAGTAGAGCGCGCTTATAGGCTCTTTTTAAAAGTTAAAGATGCTCGTCGTTATGACACTGCACAAAGATTTTGGCGTGCTAAGGGATGGCATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

563

Amino Acids

63.15

Weight (kDa)

9.03

Isoelectric Point (pI)

42.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	165 - 213	9.1e-06	PPR repeat family
TPR_24	PF23276	265 - 365	5.9e-07	Fungal tetratrico peptide repeats
PPR_2	PF13041	273 - 317	2e-09	PPR repeat family
PPR_3	PF13812	292 - 350	1.5e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	300 - 333	1.5e-09	PPR repeat
PPR_2	PF13041	308 - 351	5.5e-10	PPR repeat family
PPR	PF01535	308 - 337	4.3e-06	PPR repeat
PPR_long	PF17177	321 - 409	1.2e-06	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	339 - 388	1.8e-08	PPR repeat family
PPR_2	PF13041	374 - 422	1.5e-09	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43820
fragaria_vesca	FvH4_5g24880 FvH4_5g25350 FvH4_5g25520
malus_domestica	MD16G1284000.v1.1
prunus_persica	Prupe.5G009500_v2.0.a1
pyrus_communis	pycom16g26010
rosa_chinensis	RchiOBHm_Chr6g0271861 RchiOBHm_Chr6g0271871 RchiOBHm_Chr6g0271981 RchiOBHm_Chr7g0215761 RchiOBHm_Chr7g0215771 RchiOBHm_Chr7g0215901 RchiOBHm_Chr7g0217231 RchiOBHm_Chr7g0219831
rosa_laevigata	RLG00000002611 RLG00000002625 RLG00000013566
rosa_multiflora	Rmu_sc0000055.1_g000008 Rmu_sc0000055.1_g000009 Rmu_sc0000516.1_g000005 Rmu_sc0000516.1_g000006 Rmu_sc0004379.1_g000016 Rmu_sc0006240.1_g000009 Rmu_sc0007857.1_g000006 Rmu_sc0016364.1_g000002 Rmu_sc0016407.1_g000001 Rmu_sc0023052.1_g000001
rosa_roxburghii	Rroxscaffold_2G00114980 Rroxscaffold_3G00243850 Rroxscaffold_5G00342010 Rroxscaffold_7G00186190
rosa_rugosa	Rorug06G0064100 Rorug07G0156600 Rorug07G0157900 Rorug07G0158000
rosa_samantha	Rh1BG116200 Rh6AG181800 Rh6BG185400 Rh6CG182900 Rh6CG183200 Rh6DG174300 Rh6DG174600 Rh7AG294600 Rh7AG306400 Rh7AG306500 Rh7BG286400 Rh7CG314600 Rh7CG325500 Rh7DG296900 Rh7DG299400 Rh7DG306200
rosa_wichuraiana	Rw6G015640 Rw7G026030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1032, 1347
AccII	CGCG	1 cut(s)	1602
AciI	CCGC	3 cut(s)	483, 748, 1425
AclI	AACGTT	1 cut(s)	1193
AclWI	GGATC	1 cut(s)	1112
AcsI	RAATTY	2 cut(s)	430, 769
AcuI	CTGAAG	1 cut(s)	317
AcyI	GRCGYC	1 cut(s)	1020
AfaI	GTAC	6 cut(s)	349, 732, 814, 1088, 1231, 1503
AfiI	CCNNNNNNNGG	4 cut(s)	792, 1174, 1232, 1233
AflIII	ACRYGT	1 cut(s)	504
AgsI	TTSAA	8 cut(s)	721, 808, 921, 1047, 1190, 1256, 1493, 1587
AjnI	CCWGG	1 cut(s)	56
AluBI	AGCT	6 cut(s)	110, 956, 1028, 1269, 1351, 1489
AluI	AGCT	6 cut(s)	110, 956, 1028, 1269, 1351, 1489
Alw26I	GTCTC	2 cut(s)	602, 756
AlwI	GGATC	1 cut(s)	1112
Ama87I	CYCGRG	1 cut(s)	585
AoxI	GGCC	2 cut(s)	46, 282
ApaI	GGGCCC	2 cut(s)	50, 286
ApeKI	GCWGC	5 cut(s)	28, 438, 764, 1286, 1486
ApoI	RAATTY	2 cut(s)	430, 769
AseI	ATTAAT	2 cut(s)	1145, 1464
AsiSI	GCGATCGC	1 cut(s)	35
AspLEI	GCGC	2 cut(s)	1602, 1604
AspS9I	GGNCC	5 cut(s)	46, 47, 282, 283, 1274
AsuC2I	CCSGG	1 cut(s)	1168
AsuHPI	GGTGA	2 cut(s)	481, 883
AvaI	CYCGRG	1 cut(s)	585
AvaII	GGWCC	1 cut(s)	1274
BaeGI	GKGCMC	2 cut(s)	50, 286
BanII	GRGCYC	3 cut(s)	50, 286, 586
BbsI	GAAGAC	1 cut(s)	1004
BbvI	GCAGC	5 cut(s)	15, 450, 751, 1273, 1498
BccI	CCATC	5 cut(s)	58, 794, 834, 893, 1671
BciT130I	CCWGG	1 cut(s)	58
BclI	TGATCA	1 cut(s)	190
BcnI	CCSGG	1 cut(s)	1168
BcoDI	GTCTC	2 cut(s)	602, 756
BfaI	CTAG	2 cut(s)	165, 1371
BisI	GCNGC	5 cut(s)	29, 439, 765, 1287, 1487
BlpI	GCTNAGC	1 cut(s)	38
BlsI	GCNGC	5 cut(s)	30, 440, 766, 1288, 1488
BmcAI	AGTACT	1 cut(s)	1088
Bme1390I	CCNGG	2 cut(s)	58, 1168
Bme18I	GGWCC	1 cut(s)	1274
BmeT110I	CYCGRG	1 cut(s)	585
BmgT120I	GGNCC	5 cut(s)	46, 47, 282, 283, 1274
BmiI	GGNNCC	6 cut(s)	47, 48, 234, 249, 284, 285
BmrFI	CCNGG	2 cut(s)	58, 1168
BmrI	ACTGGG	1 cut(s)	1221
BmsI	GCATC	7 cut(s)	438, 549, 961, 1141, 1171, 1313, 1621
BmuI	ACTGGG	1 cut(s)	1221
BpiI	GAAGAC	1 cut(s)	1004
Bpu10I	CCTNAGC	1 cut(s)	1671
Bpu1102I	GCTNAGC	1 cut(s)	38
BpuMI	CCSGG	1 cut(s)	1168
Bsa29I	ATCGAT	1 cut(s)	617
BsaAI	YACGTR	2 cut(s)	507, 819
BsaBI	GATNNNNATC	1 cut(s)	1295
BsaHI	GRCGYC	1 cut(s)	1020
BsaI	GGTCTC	2 cut(s)	602, 756
BsaJI	CCNNGG	1 cut(s)	657
BsaXI	ACNNNNNCTCC	2 cut(s)	943, 973
Bsc4I	CCNNNNNNNGG	4 cut(s)	792, 1174, 1232, 1233
Bse1I	ACTGG	2 cut(s)	212, 1227
Bse3DI	GCAATG	1 cut(s)	894
Bse8I	GATNNNNATC	1 cut(s)	1295
BseBI	CCWGG	1 cut(s)	58
BseCI	ATCGAT	1 cut(s)	617
BseDI	CCNNGG	1 cut(s)	657
BseGI	GGATG	5 cut(s)	50, 313, 845, 1328, 1682
BseJI	GATNNNNATC	1 cut(s)	1295
BseLI	CCNNNNNNNGG	4 cut(s)	792, 1174, 1232, 1233
BseMI	GCAATG	1 cut(s)	894
BseMII	CTCAG	3 cut(s)	52, 120, 702
BseNI	ACTGG	2 cut(s)	212, 1227
BsePI	GCGCGC	1 cut(s)	1600
BseSI	GKGCMC	2 cut(s)	50, 286
BseXI	GCAGC	5 cut(s)	15, 450, 751, 1273, 1498
BsgI	GTGCAG	2 cut(s)	1544, 1635
Bsh1236I	CGCG	1 cut(s)	1602
Bsh1285I	CGRYCG	1 cut(s)	35
BshFI	GGCC	2 cut(s)	48, 284
BshVI	ATCGAT	1 cut(s)	617
BsiEI	CGRYCG	1 cut(s)	35
BsiHKCI	CYCGRG	1 cut(s)	585
BsiSI	CCGG	2 cut(s)	305, 1168
BslFI	GGGAC	4 cut(s)	153, 582, 894, 1249
BslI	CCNNNNNNNGG	4 cut(s)	792, 1174, 1232, 1233
BsmAI	GTCTC	2 cut(s)	602, 756
BsmFI	GGGAC	4 cut(s)	153, 582, 894, 1249
BsmI	GAATGC	1 cut(s)	1427
BsnI	GGCC	2 cut(s)	48, 284
Bso31I	GGTCTC	2 cut(s)	602, 756
BsoBI	CYCGRG	1 cut(s)	585
Bsp120I	GGGCCC	2 cut(s)	46, 282
Bsp1286I	GDGCHC	3 cut(s)	50, 286, 586
Bsp1407I	TGTACA	1 cut(s)	730
Bsp143I	GATC	5 cut(s)	32, 150, 190, 1117, 1296
Bsp1720I	GCTNAGC	1 cut(s)	38
BspACI	CCGC	3 cut(s)	483, 748, 1425
BspANI	GGCC	2 cut(s)	48, 284
BspCNI	CTCAG	3 cut(s)	51, 119, 703
BspDI	ATCGAT	1 cut(s)	617
BspFNI	CGCG	1 cut(s)	1602
BspLI	GGNNCC	6 cut(s)	47, 48, 234, 249, 284, 285
BspPI	GGATC	1 cut(s)	1112
BspTNI	GGTCTC	2 cut(s)	602, 756
BsrDI	GCAATG	1 cut(s)	894
BsrGI	TGTACA	1 cut(s)	730
BsrI	ACTGG	2 cut(s)	212, 1227
BssECI	CCNNGG	1 cut(s)	657
BssHII	GCGCGC	1 cut(s)	1600
BssMI	GATC	5 cut(s)	32, 150, 190, 1117, 1296
BssNI	GRCGYC	1 cut(s)	1020
BssT1I	CCWWGG	1 cut(s)	657
Bst2UI	CCWGG	1 cut(s)	58
Bst4CI	ACNGT	5 cut(s)	14, 146, 293, 735, 1274
Bst6I	CTCTTC	3 cut(s)	107, 850, 1509
BstACI	GRCGYC	1 cut(s)	1020
BstAPI	GCANNNNNTGC	3 cut(s)	28, 568, 893
BstAUI	TGTACA	1 cut(s)	730
BstBAI	YACGTR	2 cut(s)	507, 819
BstC8I	GCNNGC	6 cut(s)	366, 483, 746, 1547, 1602, 1668
BstDEI	CTNAG	5 cut(s)	38, 106, 474, 711, 1671
BstF5I	GGATG	5 cut(s)	50, 313, 845, 1328, 1682
BstFNI	CGCG	1 cut(s)	1602
BstHHI	GCGC	2 cut(s)	1602, 1604
BstKTI	GATC	5 cut(s)	35, 153, 193, 1120, 1299
BstMAI	GTCTC	2 cut(s)	602, 756
BstMBI	GATC	5 cut(s)	32, 150, 190, 1117, 1296
BstMCI	CGRYCG	1 cut(s)	35
BstMWI	GCNNNNNNNGC	6 cut(s)	28, 34, 116, 568, 893, 1034
BstNI	CCWGG	1 cut(s)	58
BstNSI	RCATGY	1 cut(s)	368
BstSCI	CCNGG	2 cut(s)	56, 1166
BstSLI	GKGCMC	2 cut(s)	50, 286
BstSNI	TACGTA	1 cut(s)	819
BstUI	CGCG	1 cut(s)	1602
BstV1I	GCAGC	5 cut(s)	15, 450, 751, 1273, 1498
BstV2I	GAAGAC	1 cut(s)	1004
Bsu15I	ATCGAT	1 cut(s)	617
BsuRI	GGCC	2 cut(s)	48, 284
BsuTUI	ATCGAT	1 cut(s)	617
BtgZI	GCGATG	2 cut(s)	461, 1304
BtsCI	GGATG	5 cut(s)	50, 313, 845, 1328, 1682
BtsI	GCAGTG	1 cut(s)	1647
BtsIMutI	CAGTG	2 cut(s)	740, 1647
Cac8I	GCNNGC	6 cut(s)	366, 483, 746, 1547, 1602, 1668
CfoI	GCGC	2 cut(s)	1602, 1604
Cfr13I	GGNCC	5 cut(s)	46, 47, 282, 283, 1274
ClaI	ATCGAT	1 cut(s)	617
CseI	GACGC	1 cut(s)	1028
CsiI	ACCWGGT	1 cut(s)	56
Csp6I	GTAC	6 cut(s)	348, 731, 813, 1087, 1230, 1502
CviAII	CATG	7 cut(s)	137, 365, 577, 755, 994, 1039, 1510
CviQI	GTAC	6 cut(s)	348, 731, 813, 1087, 1230, 1502
DdeI	CTNAG	5 cut(s)	38, 106, 474, 711, 1671
DpnI	GATC	5 cut(s)	34, 152, 192, 1119, 1298
DpnII	GATC	5 cut(s)	32, 150, 190, 1117, 1296
DraI	TTTAAA	1 cut(s)	1620
Eam1104I	CTCTTC	3 cut(s)	107, 850, 1509
EarI	CTCTTC	3 cut(s)	107, 850, 1509
Eco105I	TACGTA	1 cut(s)	819
Eco130I	CCWWGG	1 cut(s)	657
Eco24I	GRGCYC	3 cut(s)	50, 286, 586
Eco31I	GGTCTC	2 cut(s)	602, 756
Eco32I	GATATC	1 cut(s)	499
Eco47I	GGWCC	1 cut(s)	1274
Eco57I	CTGAAG	1 cut(s)	317
Eco88I	CYCGRG	1 cut(s)	585
EcoO109I	RGGNCCY	3 cut(s)	46, 282, 283
EcoRII	CCWGG	1 cut(s)	56
EcoRV	GATATC	1 cut(s)	499
EcoT14I	CCWWGG	1 cut(s)	657
EcoT22I	ATGCAT	1 cut(s)	573
EcoT38I	GRGCYC	3 cut(s)	50, 286, 586
ErhI	CCWWGG	1 cut(s)	657
FaeI	CATG	7 cut(s)	140, 368, 580, 758, 997, 1042, 1513
FalI	AAGNNNNNCTT	2 cut(s)	435, 467
FaqI	GGGAC	4 cut(s)	153, 582, 894, 1249
FatI	CATG	7 cut(s)	136, 364, 576, 754, 993, 1038, 1509
FauI	CCCGC	1 cut(s)	490
FauNDI	CATATG	1 cut(s)	555
FbaI	TGATCA	1 cut(s)	190
Fnu4HI	GCNGC	5 cut(s)	29, 439, 765, 1287, 1487
FokI	GGATG	4 cut(s)	37, 320, 852, 1335
FriOI	GRGCYC	3 cut(s)	50, 286, 586
Fsp4HI	GCNGC	5 cut(s)	29, 439, 765, 1287, 1487
FspBI	CTAG	2 cut(s)	165, 1371
GlaI	GCGC	2 cut(s)	1601, 1603
GluI	GCNGC	5 cut(s)	29, 439, 765, 1287, 1487
HaeIII	GGCC	2 cut(s)	48, 284
HapII	CCGG	2 cut(s)	305, 1168
HgaI	GACGC	1 cut(s)	1028
HhaI	GCGC	2 cut(s)	1602, 1604
Hin1I	GRCGYC	1 cut(s)	1020
Hin1II	CATG	7 cut(s)	140, 368, 580, 758, 997, 1042, 1513
Hin6I	GCGC	2 cut(s)	1600, 1602
HinP1I	GCGC	2 cut(s)	1600, 1602
HinfI	GANTC	3 cut(s)	713, 1433, 1517
HpaII	CCGG	2 cut(s)	305, 1168
HphI	GGTGA	2 cut(s)	481, 883
Hpy166II	GTNNAC	1 cut(s)	1277
Hpy188I	TCNGA	9 cut(s)	150, 237, 262, 336, 677, 963, 1083, 1438, 1688
Hpy188III	TCNNGA	6 cut(s)	188, 599, 637, 846, 911, 1187
Hpy8I	GTNNAC	1 cut(s)	1277
Hpy99I	CGWCG	1 cut(s)	1641
HpyAV	CCTTC	3 cut(s)	86, 90, 1300
HpyCH4III	ACNGT	5 cut(s)	14, 146, 293, 735, 1274
HpyCH4IV	ACGT	3 cut(s)	506, 818, 1193
HpyF10VI	GCNNNNNNNGC	6 cut(s)	28, 34, 116, 568, 893, 1034
HpyF3I	CTNAG	5 cut(s)	38, 106, 474, 711, 1671
HpySE526I	ACGT	3 cut(s)	506, 818, 1193
Hsp92I	GRCGYC	1 cut(s)	1020
Hsp92II	CATG	7 cut(s)	140, 368, 580, 758, 997, 1042, 1513
HspAI	GCGC	2 cut(s)	1600, 1602
Ksp22I	TGATCA	1 cut(s)	190
Kzo9I	GATC	5 cut(s)	32, 150, 190, 1117, 1296
LmnI	GCTCC	1 cut(s)	238
Lsp1109I	GCAGC	5 cut(s)	15, 450, 751, 1273, 1498
LweI	GCATC	7 cut(s)	438, 549, 961, 1141, 1171, 1313, 1621
MabI	ACCWGGT	1 cut(s)	56
MaeI	CTAG	2 cut(s)	165, 1371
MaeII	ACGT	3 cut(s)	506, 818, 1193
MaeIII	GTNAC	2 cut(s)	207, 469
MalI	GATC	5 cut(s)	34, 152, 192, 1119, 1298
MboI	GATC	5 cut(s)	32, 150, 190, 1117, 1296
MboII	GAAGA	9 cut(s)	94, 323, 549, 698, 808, 867, 1009, 1214, 1526
MfeI	CAATTG	1 cut(s)	357
MhlI	GDGCHC	3 cut(s)	50, 286, 586
MlyI	GAGTC	2 cut(s)	722, 1526
MmeI	TCCRAC	3 cut(s)	941, 1061, 1300
Mph1103I	ATGCAT	1 cut(s)	573
MseI	TTAA	8 cut(s)	222, 434, 462, 1145, 1161, 1464, 1619, 1626
MslI	CAYNNNNRTG	1 cut(s)	759
MspA1I	CMGCKG	1 cut(s)	748
MspI	CCGG	2 cut(s)	305, 1168
MspR9I	CCNGG	2 cut(s)	58, 1168
MunI	CAATTG	1 cut(s)	357
Mva1269I	GAATGC	1 cut(s)	1427
MvaI	CCWGG	1 cut(s)	58
MvnI	CGCG	1 cut(s)	1602
MwoI	GCNNNNNNNGC	6 cut(s)	28, 34, 116, 568, 893, 1034
NciI	CCSGG	1 cut(s)	1168
NdeI	CATATG	1 cut(s)	555
NdeII	GATC	5 cut(s)	32, 150, 190, 1117, 1296
NlaIII	CATG	7 cut(s)	140, 368, 580, 758, 997, 1042, 1513
NlaIV	GGNNCC	6 cut(s)	47, 48, 234, 249, 284, 285
NmuCI	GTSAC	1 cut(s)	469
NsiI	ATGCAT	1 cut(s)	573
NspI	RCATGY	1 cut(s)	368
PaeI	GCATGC	1 cut(s)	368
PaeR7I	CTCGAG	1 cut(s)	585
PauI	GCGCGC	1 cut(s)	1600
PctI	GAATGC	1 cut(s)	1427
PfeI	GAWTC	1 cut(s)	1433
PkrI	GCNGC	5 cut(s)	30, 440, 766, 1288, 1488
Ple19I	CGATCG	1 cut(s)	35
PleI	GAGTC	2 cut(s)	721, 1525
PpsI	GAGTC	2 cut(s)	721, 1525
Ppu21I	YACGTR	2 cut(s)	507, 819
PshBI	ATTAAT	2 cut(s)	1145, 1464
PsiI	TTATAA	2 cut(s)	1032, 1347
Psp1406I	AACGTT	1 cut(s)	1193
Psp6I	CCWGG	1 cut(s)	56
PspGI	CCWGG	1 cut(s)	56
PspN4I	GGNNCC	6 cut(s)	47, 48, 234, 249, 284, 285
PspOMI	GGGCCC	2 cut(s)	46, 282
PspPI	GGNCC	5 cut(s)	46, 47, 282, 283, 1274
PspXI	VCTCGAGB	1 cut(s)	585
PteI	GCGCGC	1 cut(s)	1600
PvuI	CGATCG	1 cut(s)	35
RgaI	GCGATCGC	1 cut(s)	35
RsaI	GTAC	6 cut(s)	349, 732, 814, 1088, 1231, 1503
RsaNI	GTAC	6 cut(s)	348, 731, 813, 1087, 1230, 1502
RseI	CAYNNNNRTG	1 cut(s)	759
SaqAI	TTAA	8 cut(s)	222, 434, 462, 1145, 1161, 1464, 1619, 1626
SatI	GCNGC	5 cut(s)	29, 439, 765, 1287, 1487
Sau3AI	GATC	5 cut(s)	32, 150, 190, 1117, 1296
Sau96I	GGNCC	5 cut(s)	46, 47, 282, 283, 1274
ScaI	AGTACT	1 cut(s)	1088
SchI	GAGTC	2 cut(s)	722, 1526
ScrFI	CCNGG	2 cut(s)	58, 1168
SduI	GDGCHC	3 cut(s)	50, 286, 586
SexAI	ACCWGGT	1 cut(s)	56
SfaAI	GCGATCGC	1 cut(s)	35
SfaNI	GCATC	7 cut(s)	438, 549, 961, 1141, 1171, 1313, 1621
Sfr274I	CTCGAG	1 cut(s)	585
SgfI	GCGATCGC	1 cut(s)	35
SinI	GGWCC	1 cut(s)	1274
SlaI	CTCGAG	1 cut(s)	585
SmiMI	CAYNNNNRTG	1 cut(s)	759
SmlI	CTYRAG	1 cut(s)	585
SmoI	CTYRAG	1 cut(s)	585
SnaBI	TACGTA	1 cut(s)	819
SphI	GCATGC	1 cut(s)	368
SsiI	CCGC	3 cut(s)	483, 748, 1425
SspI	AATATT	2 cut(s)	826, 1126
SspMI	CTAG	2 cut(s)	165, 1371
StyD4I	CCNGG	2 cut(s)	56, 1166
StyI	CCWWGG	1 cut(s)	657
TaaI	ACNGT	5 cut(s)	14, 146, 293, 735, 1274
TaiI	ACGT	3 cut(s)	509, 821, 1196
TaqI	TCGA	6 cut(s)	387, 586, 617, 667, 1213, 1337
TatI	WGTACW	4 cut(s)	730, 1086, 1229, 1501
TfiI	GAWTC	1 cut(s)	1433
Tru1I	TTAA	8 cut(s)	222, 434, 462, 1145, 1161, 1464, 1619, 1626
Tru9I	TTAA	8 cut(s)	222, 434, 462, 1145, 1161, 1464, 1619, 1626
TscAI	CASTG	2 cut(s)	740, 1654
TseFI	GTSAC	1 cut(s)	469
TseI	GCWGC	5 cut(s)	28, 438, 764, 1286, 1486
Tsp45I	GTSAC	1 cut(s)	469
TspDTI	ATGAA	5 cut(s)	81, 762, 922, 1010, 1089
TspRI	CASTG	2 cut(s)	740, 1654
VpaK11BI	GGWCC	1 cut(s)	1274
VspI	ATTAAT	2 cut(s)	1145, 1464
XapI	RAATTY	2 cut(s)	430, 769
XceI	RCATGY	1 cut(s)	368
XhoI	CTCGAG	1 cut(s)	585
XspI	CTAG	2 cut(s)	165, 1371
ZrmI	AGTACT	1 cut(s)	1088
Zsp2I	ATGCAT	1 cut(s)	573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.