Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001315

Physical Location & Seq

Genomic Coordinates Reverse (-)

10703214 .. 10703569

Gene Structure 356 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00342010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGAGGGGACTTCACACGAGAGAGAGCTTGAGTGAGGAACGGGCTTCTCTTTGGTCGAAGGTACTTTGGAAGAAGACAGATGAGGGACTTGTGGAGTCGGCGGACGCGCAGTTTTTGAATCGATCGGTCAAAGTGGCTACAATTTCGTTTCTTAATTCGGTGAAGGGGAAAGTGCGATTCAATGGCACTACGTATAACATTGTTATTGGTGGGTGGTCGAATTATGGTAGAGTTGGTGAGATGGAGAGGACTTTGGAAGCAATGGTAGCAGATGGGTATAGTCCCGATAGTGCAACTTTCGCCACAATCTTGAGGGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

106

Amino Acids

11.8

Weight (kDa)

9.1

Isoelectric Point (pI)

28.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	64 - 105	7.1e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43820
fragaria_vesca	FvH4_5g24880 FvH4_5g25350 FvH4_5g25520
malus_domestica	MD16G1284000.v1.1
prunus_persica	Prupe.5G009500_v2.0.a1
pyrus_communis	pycom16g26010
rosa_chinensis	RchiOBHm_Chr6g0271861 RchiOBHm_Chr6g0271871 RchiOBHm_Chr6g0271981 RchiOBHm_Chr7g0215761 RchiOBHm_Chr7g0215771 RchiOBHm_Chr7g0215901 RchiOBHm_Chr7g0217231 RchiOBHm_Chr7g0219831
rosa_laevigata	RLG00000002611 RLG00000002625 RLG00000013566
rosa_multiflora	Rmu_sc0000055.1_g000008 Rmu_sc0000055.1_g000009 Rmu_sc0000516.1_g000005 Rmu_sc0000516.1_g000006 Rmu_sc0004379.1_g000016 Rmu_sc0006240.1_g000009 Rmu_sc0007857.1_g000006 Rmu_sc0016364.1_g000002 Rmu_sc0016407.1_g000001 Rmu_sc0023052.1_g000001
rosa_roxburghii	Rroxscaffold_2G00114980 Rroxscaffold_3G00243850 Rroxscaffold_5G00342010 Rroxscaffold_7G00186190
rosa_rugosa	Rorug06G0064100 Rorug07G0156600 Rorug07G0157900 Rorug07G0158000
rosa_samantha	Rh1BG116200 Rh6AG181800 Rh6BG185400 Rh6CG182900 Rh6CG183200 Rh6DG174300 Rh6DG174600 Rh7AG294600 Rh7AG306400 Rh7AG306500 Rh7BG286400 Rh7CG314600 Rh7CG325500 Rh7DG296900 Rh7DG299400 Rh7DG306200
rosa_wichuraiana	Rw6G015640 Rw7G026030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	107
AciI	CCGC	1 cut(s)	101
AfaI	GTAC	1 cut(s)	63
AgsI	TTSAA	2 cut(s)	118, 181
AluBI	AGCT	1 cut(s)	27
AluI	AGCT	1 cut(s)	27
AspLEI	GCGC	1 cut(s)	109
AsuHPI	GGTGA	2 cut(s)	172, 248
BauI	CACGAG	1 cut(s)	16
BbsI	GAAGAC	1 cut(s)	80
BccI	CCATC	2 cut(s)	235, 266
BfaI	CTAG	1 cut(s)	319
BpiI	GAAGAC	1 cut(s)	80
BpuEI	CTTGAG	1 cut(s)	49
Bsa29I	ATCGAT	1 cut(s)	121
BsaAI	YACGTR	1 cut(s)	192
Bse3DI	GCAATG	1 cut(s)	267
BseCI	ATCGAT	1 cut(s)	121
BseMI	GCAATG	1 cut(s)	267
Bsh1236I	CGCG	1 cut(s)	107
Bsh1285I	CGRYCG	1 cut(s)	125
BshVI	ATCGAT	1 cut(s)	121
BsiEI	CGRYCG	1 cut(s)	125
BslFI	GGGAC	3 cut(s)	21, 99, 267
BsmFI	GGGAC	3 cut(s)	21, 99, 267
Bsp143I	GATC	1 cut(s)	122
BspACI	CCGC	1 cut(s)	101
BspDI	ATCGAT	1 cut(s)	121
BspFNI	CGCG	1 cut(s)	107
BsrDI	GCAATG	1 cut(s)	267
BssMI	GATC	1 cut(s)	122
BssSI	CACGAG	1 cut(s)	16
Bst2BI	CACGAG	1 cut(s)	16
BstBAI	YACGTR	1 cut(s)	192
BstFNI	CGCG	1 cut(s)	107
BstHHI	GCGC	1 cut(s)	109
BstKTI	GATC	1 cut(s)	125
BstMBI	GATC	1 cut(s)	122
BstMCI	CGRYCG	1 cut(s)	125
BstMWI	GCNNNNNNNGC	2 cut(s)	266, 299
BstSNI	TACGTA	1 cut(s)	192
BstUI	CGCG	1 cut(s)	107
BstV2I	GAAGAC	1 cut(s)	80
Bsu15I	ATCGAT	1 cut(s)	121
BsuTUI	ATCGAT	1 cut(s)	121
CfoI	GCGC	1 cut(s)	109
ClaI	ATCGAT	1 cut(s)	121
CseI	GACGC	1 cut(s)	113
Csp6I	GTAC	1 cut(s)	62
CviJI	RGCY	3 cut(s)	27, 44, 137
CviKI_1	RGCY	3 cut(s)	27, 44, 137
CviQI	GTAC	1 cut(s)	62
DpnI	GATC	1 cut(s)	124
DpnII	GATC	1 cut(s)	122
EciI	GGCGGA	1 cut(s)	116
Eco105I	TACGTA	1 cut(s)	192
FaiI	YATR	3 cut(s)	195, 225, 279
FaqI	GGGAC	3 cut(s)	21, 99, 267
FspBI	CTAG	1 cut(s)	319
GlaI	GCGC	1 cut(s)	108
HgaI	GACGC	1 cut(s)	113
HhaI	GCGC	1 cut(s)	109
Hin6I	GCGC	1 cut(s)	107
HinP1I	GCGC	1 cut(s)	107
HinfI	GANTC	3 cut(s)	95, 118, 177
HphI	GGTGA	2 cut(s)	172, 248
Hpy188III	TCNNGA	2 cut(s)	284, 310
HpyAV	CCTTC	2 cut(s)	52, 157
HpyCH4IV	ACGT	1 cut(s)	191
HpyCH4V	TGCA	1 cut(s)	293
HpyF10VI	GCNNNNNNNGC	2 cut(s)	266, 299
HpySE526I	ACGT	1 cut(s)	191
HspAI	GCGC	1 cut(s)	107
Kzo9I	GATC	1 cut(s)	122
MaeI	CTAG	1 cut(s)	319
MaeII	ACGT	1 cut(s)	191
MalI	GATC	1 cut(s)	124
MboI	GATC	1 cut(s)	122
MboII	GAAGA	2 cut(s)	82, 85
MluCI	AATT	3 cut(s)	141, 154, 220
MlyI	GAGTC	1 cut(s)	104
MnlI	CCTC	4 cut(s)	28, 76, 240, 306
MseI	TTAA	1 cut(s)	153
MvnI	CGCG	1 cut(s)	107
MwoI	GCNNNNNNNGC	2 cut(s)	266, 299
NdeII	GATC	1 cut(s)	122
PfeI	GAWTC	2 cut(s)	118, 177
Ple19I	CGATCG	1 cut(s)	125
PleI	GAGTC	1 cut(s)	103
PpsI	GAGTC	1 cut(s)	103
Ppu21I	YACGTR	1 cut(s)	192
PvuI	CGATCG	1 cut(s)	125
RsaI	GTAC	1 cut(s)	63
RsaNI	GTAC	1 cut(s)	62
SaqAI	TTAA	1 cut(s)	153
Sau3AI	GATC	1 cut(s)	122
SchI	GAGTC	1 cut(s)	104
SetI	ASST	3 cut(s)	29, 63, 194
SgeI	CNNG	7 cut(s)	28, 30, 40, 53, 101, 118, 296
SmlI	CTYRAG	2 cut(s)	28, 310
SmoI	CTYRAG	2 cut(s)	28, 310
SnaBI	TACGTA	1 cut(s)	192
Sse9I	AATT	3 cut(s)	141, 154, 220
SsiI	CCGC	1 cut(s)	101
SspMI	CTAG	1 cut(s)	319
TaiI	ACGT	1 cut(s)	194
TaqI	TCGA	3 cut(s)	56, 121, 218
TaqII	GACCGA	1 cut(s)	115
TasI	AATT	3 cut(s)	141, 154, 220
TfiI	GAWTC	2 cut(s)	118, 177
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
XspI	CTAG	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.