Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001315

Physical Location & Seq

Genomic Coordinates Reverse (-)

33418714 .. 33421761

Gene Structure 3048 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19305

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGCGTTTCACAGCGCTTCACGCCCTGTCTTATCATCACTGCCGTCTCTCAGCAGCAGAGCCAGGTACTACCCATTGCTTCACCTTCATTCACCAATTTCTTCGTCTCTCTTTTCAACTCTTAATGCTCAATCCCAACATGAATATGTCAAATTCAATCCCAACCAGTCTTCTTCTCTTGACGAACCTTCTGTTCTTCACCAGCTCTCTGTTCTGTTACCAATCCCCCATCAAATTTCACCTCCAAAACAATTTGGCCCCACTTATTCGAATAAGAAGGTAGAATCTGTTAGGGCTGTGGATGGGTTTTTAATGCCCGACCAGAAATTACGTGGGGTTTTTCTTCAGAAATTGAAGGGTATAGCTGTAATTGAGCATGCGCTCGACGATGTTGGTGTGGATTTGAGCGTTGATGTTGTTGCACAAGTAGTGAATAGAGGTTGTTTAGGCGGTGAAGCAATGCTTGTGTTTTTTAATTGGGTGATTAAGAAGCCAAATGTAGCTAAGCATGTTCATACATACCATATAATCCTCAAAGCATTGGGTAGAAGAAAGTTCTTTAATTATATGATGCAAGTTTTGAATGACATGAGGAGCCGAGACATACGTCTCGATTTGGAGACTGTGTCAATTGTGATGGATAGTTTTGTGAGGGCTGGACATGTCTCGAAAGCAATCCAAGTGTTCCGAAACTCGGCAGAGTTCGGGTGGGATTGCGATACTGAGTGTCTGAATGTGCTTCTGCAGTGTCTGTGTCGGCGGTCTCATGTAGTGGCTGCAAATTCATTTCTTAATTCTGTGAAGGGGAAAGTGCGATTCAATGGCACTACGTATAACATTGTTATTGGTGGGTGGTCGAAATATGGTAGAGTTGGTGAGATGGAGAGGACTTTGGAAGCAATGGTAGCAGATGGGTTTAGTCCTGATAGTGCAACTTTCAGTTACATTCTTGAGGGTCTAGGAAGAGCTGATCGGATTGACGATGCAGTTGAGATTTTTGAGAGCATGAAGGGGAAAGGTTGCGTGCCAGACACCATACATACAATGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

350

Amino Acids

39.05

Weight (kDa)

8.81

Isoelectric Point (pI)

40.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	277 - 321	3.4e-08	PPR repeat family
PPR_1	PF12854	304 - 337	1.7e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43820
fragaria_vesca	FvH4_5g24880 FvH4_5g25350 FvH4_5g25520
malus_domestica	MD16G1284000.v1.1
prunus_persica	Prupe.5G009500_v2.0.a1
pyrus_communis	pycom16g26010
rosa_chinensis	RchiOBHm_Chr6g0271861 RchiOBHm_Chr6g0271871 RchiOBHm_Chr6g0271981 RchiOBHm_Chr7g0215761 RchiOBHm_Chr7g0215771 RchiOBHm_Chr7g0215901 RchiOBHm_Chr7g0217231 RchiOBHm_Chr7g0219831
rosa_laevigata	RLG00000002611 RLG00000002625 RLG00000013566
rosa_multiflora	Rmu_sc0000055.1_g000008 Rmu_sc0000055.1_g000009 Rmu_sc0000516.1_g000005 Rmu_sc0000516.1_g000006 Rmu_sc0004379.1_g000016 Rmu_sc0006240.1_g000009 Rmu_sc0007857.1_g000006 Rmu_sc0016364.1_g000002 Rmu_sc0016407.1_g000001 Rmu_sc0023052.1_g000001
rosa_roxburghii	Rroxscaffold_2G00114980 Rroxscaffold_3G00243850 Rroxscaffold_5G00342010 Rroxscaffold_7G00186190
rosa_rugosa	Rorug06G0064100 Rorug07G0156600 Rorug07G0157900 Rorug07G0158000
rosa_samantha	Rh1BG116200 Rh6AG181800 Rh6BG185400 Rh6CG182900 Rh6CG183200 Rh6DG174300 Rh6DG174600 Rh7AG294600 Rh7AG306400 Rh7AG306500 Rh7BG286400 Rh7CG314600 Rh7CG325500 Rh7DG296900 Rh7DG299400 Rh7DG306200
rosa_wichuraiana	Rw6G015640 Rw7G026030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	450, 760
AcsI	RAATTY	3 cut(s)	152, 234, 781
AcuI	CTGAAG	1 cut(s)	329
AfaI	GTAC	1 cut(s)	68
AfeI	AGCGCT	1 cut(s)	16
AfiI	CCNNNNNNNGG	1 cut(s)	694
AflIII	ACRYGT	1 cut(s)	661
AgsI	TTSAA	5 cut(s)	117, 157, 355, 583, 820
AjnI	CCWGG	1 cut(s)	62
AluBI	AGCT	4 cut(s)	205, 365, 503, 968
AluI	AGCT	4 cut(s)	205, 365, 503, 968
Alw26I	GTCTC	7 cut(s)	51, 111, 594, 614, 614, 670, 768
AlwNI	CAGNNNCTG	1 cut(s)	751
Aor51HI	AGCGCT	1 cut(s)	16
AoxI	GGCC	1 cut(s)	256
ApeKI	GCWGC	2 cut(s)	54, 776
ApoI	RAATTY	3 cut(s)	152, 234, 781
AspLEI	GCGC	2 cut(s)	17, 382
AspS9I	GGNCC	1 cut(s)	257
AsuHPI	GGTGA	7 cut(s)	74, 84, 191, 231, 464, 493, 887
AsuII	TTCGAA	1 cut(s)	269
BbsI	GAAGAC	1 cut(s)	162
BbvI	GCAGC	2 cut(s)	66, 763
BccI	CCATC	5 cut(s)	237, 296, 631, 874, 905
BceAI	ACGGC	1 cut(s)	28
BciT130I	CCWGG	1 cut(s)	64
BcoDI	GTCTC	7 cut(s)	51, 111, 594, 614, 614, 670, 768
BfaI	CTAG	1 cut(s)	959
BfmI	CTRYAG	1 cut(s)	743
BfoI	RGCGCY	1 cut(s)	18
BisI	GCNGC	2 cut(s)	55, 777
BlpI	GCTNAGC	1 cut(s)	504
BlsI	GCNGC	2 cut(s)	56, 778
Bme1390I	CCNGG	1 cut(s)	64
BmgT120I	GGNCC	1 cut(s)	257
BmiI	GGNNCC	2 cut(s)	259, 596
BmrFI	CCNGG	1 cut(s)	64
BmsI	GCATC	2 cut(s)	561, 973
BoxI	GACNNNNGTC	1 cut(s)	606
BpiI	GAAGAC	1 cut(s)	162
Bpu1102I	GCTNAGC	1 cut(s)	504
Bpu14I	TTCGAA	1 cut(s)	269
BpuEI	CTTGAG	1 cut(s)	971
BsaAI	YACGTR	2 cut(s)	332, 831
BsaI	GGTCTC	1 cut(s)	768
BsaXI	ACNNNNNCTCC	2 cut(s)	611, 641
Bsc4I	CCNNNNNNNGG	1 cut(s)	694
Bse1I	ACTGG	1 cut(s)	166
Bse3DI	GCAATG	3 cut(s)	74, 465, 906
BseBI	CCWGG	1 cut(s)	64
BseGI	GGATG	1 cut(s)	307
BseLI	CCNNNNNNNGG	1 cut(s)	694
BseMI	GCAATG	3 cut(s)	74, 465, 906
BseMII	CTCAG	2 cut(s)	64, 714
BseNI	ACTGG	1 cut(s)	166
BseRI	GAGGAG	1 cut(s)	607
BseXI	GCAGC	2 cut(s)	66, 763
BshFI	GGCC	1 cut(s)	258
BslI	CCNNNNNNNGG	1 cut(s)	694
BsmAI	GTCTC	7 cut(s)	51, 111, 594, 614, 614, 670, 768
BsmBI	CGTCTC	3 cut(s)	51, 111, 614
BsnI	GGCC	1 cut(s)	258
Bso31I	GGTCTC	1 cut(s)	768
Bsp119I	TTCGAA	1 cut(s)	269
Bsp143I	GATC	1 cut(s)	970
Bsp1720I	GCTNAGC	1 cut(s)	504
BspACI	CCGC	2 cut(s)	450, 760
BspANI	GGCC	1 cut(s)	258
BspCNI	CTCAG	2 cut(s)	63, 715
BspLI	GGNNCC	2 cut(s)	259, 596
BspMAI	CTGCAG	1 cut(s)	747
BspQI	GCTCTTC	1 cut(s)	958
BspT104I	TTCGAA	1 cut(s)	269
BspTNI	GGTCTC	1 cut(s)	768
BsrDI	GCAATG	3 cut(s)	74, 465, 906
BsrI	ACTGG	1 cut(s)	166
BssMI	GATC	1 cut(s)	970
Bst2UI	CCWGG	1 cut(s)	64
Bst4CI	ACNGT	1 cut(s)	625
Bst6I	CTCTTC	1 cut(s)	958
BstBAI	YACGTR	2 cut(s)	332, 831
BstBI	TTCGAA	1 cut(s)	269
BstC8I	GCNNGC	2 cut(s)	378, 1025
BstDEI	CTNAG	3 cut(s)	50, 504, 723
BstF5I	GGATG	1 cut(s)	307
BstH2I	RGCGCY	1 cut(s)	18
BstHHI	GCGC	2 cut(s)	17, 382
BstKTI	GATC	1 cut(s)	973
BstMAI	GTCTC	7 cut(s)	51, 111, 594, 614, 614, 670, 768
BstMBI	GATC	1 cut(s)	970
BstMWI	GCNNNNNNNGC	2 cut(s)	21, 905
BstNI	CCWGG	1 cut(s)	64
BstNSI	RCATGY	3 cut(s)	380, 512, 665
BstPAI	GACNNNNGTC	1 cut(s)	606
BstSCI	CCNGG	1 cut(s)	62
BstSFI	CTRYAG	1 cut(s)	743
BstSNI	TACGTA	1 cut(s)	831
BstV1I	GCAGC	2 cut(s)	66, 763
BstV2I	GAAGAC	1 cut(s)	162
BsuRI	GGCC	1 cut(s)	258
BtsCI	GGATG	1 cut(s)	307
BtsI	GCAGTG	2 cut(s)	38, 752
BtsIMutI	CAGTG	2 cut(s)	38, 752
Cac8I	GCNNGC	2 cut(s)	378, 1025
CaiI	CAGNNNCTG	1 cut(s)	751
CfoI	GCGC	2 cut(s)	17, 382
Cfr13I	GGNCC	1 cut(s)	257
Csp6I	GTAC	1 cut(s)	67
CviAII	CATG	7 cut(s)	140, 377, 509, 589, 662, 767, 1006
CviQI	GTAC	1 cut(s)	67
DdeI	CTNAG	3 cut(s)	50, 504, 723
DpnI	GATC	1 cut(s)	972
DpnII	GATC	1 cut(s)	970
Eam1104I	CTCTTC	1 cut(s)	958
EarI	CTCTTC	1 cut(s)	958
Eco105I	TACGTA	1 cut(s)	831
Eco31I	GGTCTC	1 cut(s)	768
Eco47III	AGCGCT	1 cut(s)	16
Eco57I	CTGAAG	1 cut(s)	329
EcoRII	CCWGG	1 cut(s)	62
Esp3I	CGTCTC	3 cut(s)	51, 111, 614
FaeI	CATG	7 cut(s)	143, 380, 512, 592, 665, 770, 1009
FalI	AAGNNNNNCTT	2 cut(s)	447, 479
FatI	CATG	7 cut(s)	139, 376, 508, 588, 661, 766, 1005
Fnu4HI	GCNGC	2 cut(s)	55, 777
FokI	GGATG	1 cut(s)	314
Fsp4HI	GCNGC	2 cut(s)	55, 777
FspBI	CTAG	1 cut(s)	959
GlaI	GCGC	2 cut(s)	16, 381
GluI	GCNGC	2 cut(s)	55, 777
HaeII	RGCGCY	1 cut(s)	18
HaeIII	GGCC	1 cut(s)	258
HhaI	GCGC	2 cut(s)	17, 382
Hin1II	CATG	7 cut(s)	143, 380, 512, 592, 665, 770, 1009
Hin6I	GCGC	2 cut(s)	15, 380
HinP1I	GCGC	2 cut(s)	15, 380
HinfI	GANTC	2 cut(s)	284, 816
HphI	GGTGA	7 cut(s)	74, 84, 191, 231, 464, 493, 887
Hpy188I	TCNGA	4 cut(s)	348, 689, 732, 975
Hpy188III	TCNNGA	5 cut(s)	179, 611, 667, 923, 950
Hpy99I	CGWCG	1 cut(s)	389
HpyAV	CCTTC	6 cut(s)	95, 198, 271, 349, 796, 1003
HpyCH4III	ACNGT	1 cut(s)	625
HpyCH4IV	ACGT	3 cut(s)	331, 607, 830
HpyCH4V	TGCA	7 cut(s)	422, 574, 745, 779, 932, 986, 1048
HpyF10VI	GCNNNNNNNGC	2 cut(s)	21, 905
HpyF3I	CTNAG	3 cut(s)	50, 504, 723
HpySE526I	ACGT	3 cut(s)	331, 607, 830
Hsp92II	CATG	7 cut(s)	143, 380, 512, 592, 665, 770, 1009
HspAI	GCGC	2 cut(s)	15, 380
Kzo9I	GATC	1 cut(s)	970
LguI	GCTCTTC	1 cut(s)	958
LmnI	GCTCC	1 cut(s)	594
LpnPI	CCDG	9 cut(s)	39, 49, 76, 179, 215, 335, 642, 936, 1041
Lsp1109I	GCAGC	2 cut(s)	66, 763
LweI	GCATC	2 cut(s)	561, 973
MaeI	CTAG	1 cut(s)	959
MaeII	ACGT	3 cut(s)	331, 607, 830
MaeIII	GTNAC	2 cut(s)	216, 941
MalI	GATC	1 cut(s)	972
MboI	GATC	1 cut(s)	970
MboII	GAAGA	7 cut(s)	93, 162, 165, 188, 335, 561, 975
MfeI	CAATTG	1 cut(s)	630
MnlI	CCTC	7 cut(s)	252, 431, 542, 585, 645, 879, 946
MseI	TTAA	6 cut(s)	123, 311, 474, 486, 561, 792
MslI	CAYNNNNRTG	1 cut(s)	144
MspR9I	CCNGG	1 cut(s)	64
MunI	CAATTG	1 cut(s)	630
MvaI	CCWGG	1 cut(s)	64
MwoI	GCNNNNNNNGC	2 cut(s)	21, 905
NdeII	GATC	1 cut(s)	970
NlaIII	CATG	7 cut(s)	143, 380, 512, 592, 665, 770, 1009
NlaIV	GGNNCC	2 cut(s)	259, 596
NmeAIII	GCCGAG	2 cut(s)	623, 674
NspI	RCATGY	3 cut(s)	380, 512, 665
NspV	TTCGAA	1 cut(s)	269
PaeI	GCATGC	1 cut(s)	380
PciI	ACATGT	1 cut(s)	661
PciSI	GCTCTTC	1 cut(s)	958
PfeI	GAWTC	2 cut(s)	284, 816
PflFI	GACNNNGTC	1 cut(s)	625
PkrI	GCNGC	2 cut(s)	56, 778
Ppu21I	YACGTR	2 cut(s)	332, 831
PscI	ACATGT	1 cut(s)	661
PshAI	GACNNNNGTC	1 cut(s)	606
Psp6I	CCWGG	1 cut(s)	62
PspGI	CCWGG	1 cut(s)	62
PspN4I	GGNNCC	2 cut(s)	259, 596
PspPI	GGNCC	1 cut(s)	257
PstI	CTGCAG	1 cut(s)	747
PstNI	CAGNNNCTG	1 cut(s)	751
PsyI	GACNNNGTC	1 cut(s)	625
RsaI	GTAC	1 cut(s)	68
RsaNI	GTAC	1 cut(s)	67
RseI	CAYNNNNRTG	1 cut(s)	144
SapI	GCTCTTC	1 cut(s)	958
SaqAI	TTAA	6 cut(s)	123, 311, 474, 486, 561, 792
SatI	GCNGC	2 cut(s)	55, 777
Sau3AI	GATC	1 cut(s)	970
Sau96I	GGNCC	1 cut(s)	257
ScrFI	CCNGG	1 cut(s)	64
SfaNI	GCATC	2 cut(s)	561, 973
SfcI	CTRYAG	1 cut(s)	743
SfuI	TTCGAA	1 cut(s)	269
SmiMI	CAYNNNNRTG	1 cut(s)	144
SmlI	CTYRAG	1 cut(s)	950
SmoI	CTYRAG	1 cut(s)	950
SnaBI	TACGTA	1 cut(s)	831
SphI	GCATGC	1 cut(s)	380
SsiI	CCGC	2 cut(s)	450, 760
SspMI	CTAG	1 cut(s)	959
StyD4I	CCNGG	1 cut(s)	62
TaaI	ACNGT	1 cut(s)	625
TaiI	ACGT	3 cut(s)	334, 610, 833
TaqI	TCGA	5 cut(s)	269, 384, 612, 668, 857
TfiI	GAWTC	2 cut(s)	284, 816
Tru1I	TTAA	6 cut(s)	123, 311, 474, 486, 561, 792
Tru9I	TTAA	6 cut(s)	123, 311, 474, 486, 561, 792
TscAI	CASTG	2 cut(s)	45, 752
TseI	GCWGC	2 cut(s)	54, 776
TspDTI	ATGAA	5 cut(s)	77, 156, 503, 774, 1022
TspRI	CASTG	2 cut(s)	45, 752
Tth111I	GACNNNGTC	1 cut(s)	625
XapI	RAATTY	3 cut(s)	152, 234, 781
XceI	RCATGY	3 cut(s)	380, 512, 665
XcmI	CCANNNNNNNNNTGG	1 cut(s)	329
XspI	CTAG	1 cut(s)	959

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.