Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001315

Physical Location & Seq

Genomic Coordinates Forward (+)

38535391 .. 38536062

Gene Structure 672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19675

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGAAGGGGAAAGTTTGCGTGCCAAACATCAGTGCATACAATGCAGTGATCTCTAACTTCATCTCTGTTGGGAATATTGATGAATGTGTAAACTACTTCAAGTGTATGTCGAGTAATAGTTGTGATCAAAATGTTGATACTTATACCAAATTGATTGCTGCTTTGCTTAAAGCCCGGAAAGTGGCAGATGCACTGGAGATGTTTGATGAGATATTAAGTCAAGGATTTGTTCCTACTATGGGGACTATAACCTCTTTTATGGAGCCCTTATGTAGCTATGGTCCACCATATGCTGCTATGATGATCTACCAGAAAGCAAGAAAGGAATGTGGTTATGCTTCTGATATCGAATTTTATGAGTTTGTAATCAGTGGACTTTGCAAAATAGGCCAGCTTGAAAATGCTCTACTTGTCATGGAAGAGTCTATACGGAAAGGTTTTTGCCCAAGCAGGCTTACCTATAGCAAACTAAGTCACAAACTTCTTGCTTCAAATAAGTTAGAGAGGGCTTATAAGCTGTATTTGAAGATTAAAGCTGCTCGTCTTTTTGACAAGGCACAGAGAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

189

Amino Acids

21.23

Weight (kDa)

8.83

Isoelectric Point (pI)

35.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	8 - 55	7.5e-08	PPR repeat family
PPR_2	PF13041	44 - 91	1e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43820
fragaria_vesca	FvH4_5g24880 FvH4_5g25350 FvH4_5g25520
malus_domestica	MD16G1284000.v1.1
prunus_persica	Prupe.5G009500_v2.0.a1
pyrus_communis	pycom16g26010
rosa_chinensis	RchiOBHm_Chr6g0271861 RchiOBHm_Chr6g0271871 RchiOBHm_Chr6g0271981 RchiOBHm_Chr7g0215761 RchiOBHm_Chr7g0215771 RchiOBHm_Chr7g0215901 RchiOBHm_Chr7g0217231 RchiOBHm_Chr7g0219831
rosa_laevigata	RLG00000002611 RLG00000002625 RLG00000013566
rosa_multiflora	Rmu_sc0000055.1_g000008 Rmu_sc0000055.1_g000009 Rmu_sc0000516.1_g000005 Rmu_sc0000516.1_g000006 Rmu_sc0004379.1_g000016 Rmu_sc0006240.1_g000009 Rmu_sc0007857.1_g000006 Rmu_sc0016364.1_g000002 Rmu_sc0016407.1_g000001 Rmu_sc0023052.1_g000001
rosa_roxburghii	Rroxscaffold_2G00114980 Rroxscaffold_3G00243850 Rroxscaffold_5G00342010 Rroxscaffold_7G00186190
rosa_rugosa	Rorug06G0064100 Rorug07G0156600 Rorug07G0157900 Rorug07G0158000
rosa_samantha	Rh1BG116200 Rh6AG181800 Rh6BG185400 Rh6CG182900 Rh6CG183200 Rh6DG174300 Rh6DG174600 Rh7AG294600 Rh7AG306400 Rh7AG306500 Rh7BG286400 Rh7CG314600 Rh7CG325500 Rh7DG296900 Rh7DG299400 Rh7DG306200
rosa_wichuraiana	Rw6G015640 Rw7G026030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	513
AcsI	RAATTY	2 cut(s)	350, 564
AfiI	CCNNNNNNNGG	2 cut(s)	181, 239
AgsI	TTSAA	4 cut(s)	100, 398, 492, 526
AluBI	AGCT	4 cut(s)	276, 394, 517, 536
AluI	AGCT	4 cut(s)	276, 394, 517, 536
AoxI	GGCC	1 cut(s)	388
ApeKI	GCWGC	3 cut(s)	158, 293, 536
ApoI	RAATTY	2 cut(s)	350, 564
AspS9I	GGNCC	1 cut(s)	281
AsuC2I	CCSGG	1 cut(s)	175
AvaII	GGWCC	1 cut(s)	281
BanII	GRGCYC	1 cut(s)	267
BarI	GAAGNNNNNNTAC	2 cut(s)	411, 443
BbvI	GCAGC	3 cut(s)	145, 280, 523
BclI	TGATCA	1 cut(s)	124
BcnI	CCSGG	1 cut(s)	175
BfmI	CTRYAG	1 cut(s)	460
BisI	GCNGC	3 cut(s)	159, 294, 537
BlsI	GCNGC	3 cut(s)	160, 295, 538
Bme1390I	CCNGG	1 cut(s)	175
Bme18I	GGWCC	1 cut(s)	281
BmgT120I	GGNCC	1 cut(s)	281
BmiI	GGNNCC	1 cut(s)	264
BmrFI	CCNGG	1 cut(s)	175
BmsI	GCATC	1 cut(s)	178
BpmI	CTGGAG	1 cut(s)	215
BpuMI	CCSGG	1 cut(s)	175
Bsc4I	CCNNNNNNNGG	2 cut(s)	181, 239
Bse1I	ACTGG	1 cut(s)	198
BseLI	CCNNNNNNNGG	2 cut(s)	181, 239
BseNI	ACTGG	1 cut(s)	198
BseXI	GCAGC	3 cut(s)	145, 280, 523
BshFI	GGCC	1 cut(s)	390
BsiSI	CCGG	1 cut(s)	175
BslFI	GGGAC	1 cut(s)	256
BslI	CCNNNNNNNGG	2 cut(s)	181, 239
BsmFI	GGGAC	1 cut(s)	256
BsnI	GGCC	1 cut(s)	390
Bsp1286I	GDGCHC	1 cut(s)	267
Bsp143I	GATC	3 cut(s)	48, 124, 303
BspANI	GGCC	1 cut(s)	390
BspLI	GGNNCC	1 cut(s)	264
BsrI	ACTGG	1 cut(s)	198
BssMI	GATC	3 cut(s)	48, 124, 303
Bst6I	CTCTTC	1 cut(s)	414
BstAPI	GCANNNNNTGC	1 cut(s)	41
BstC8I	GCNNGC	3 cut(s)	20, 392, 452
BstDEI	CTNAG	1 cut(s)	470
BstKTI	GATC	3 cut(s)	51, 127, 306
BstMBI	GATC	3 cut(s)	48, 124, 303
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 387
BstSCI	CCNGG	1 cut(s)	173
BstSFI	CTRYAG	1 cut(s)	460
BstV1I	GCAGC	3 cut(s)	145, 280, 523
BsuRI	GGCC	1 cut(s)	390
BtsI	GCAGTG	1 cut(s)	51
BtsIMutI	CAGTG	4 cut(s)	37, 51, 191, 376
Cac8I	GCNNGC	3 cut(s)	20, 392, 452
Cfr13I	GGNCC	1 cut(s)	281
CviAII	CATG	1 cut(s)	415
CviJI	RGCY	9 cut(s)	173, 265, 276, 390, 394, 454, 509, 517, 536
CviKI_1	RGCY	9 cut(s)	173, 265, 276, 390, 394, 454, 509, 517, 536
DdeI	CTNAG	1 cut(s)	470
DpnI	GATC	3 cut(s)	50, 126, 305
DpnII	GATC	3 cut(s)	48, 124, 303
Eam1104I	CTCTTC	1 cut(s)	414
EarI	CTCTTC	1 cut(s)	414
Eco24I	GRGCYC	1 cut(s)	267
Eco32I	GATATC	1 cut(s)	346
Eco47I	GGWCC	1 cut(s)	281
EcoRV	GATATC	1 cut(s)	346
EcoT38I	GRGCYC	1 cut(s)	267
FaeI	CATG	1 cut(s)	418
FaqI	GGGAC	1 cut(s)	256
FatI	CATG	1 cut(s)	414
FauNDI	CATATG	1 cut(s)	289
FbaI	TGATCA	1 cut(s)	124
Fnu4HI	GCNGC	3 cut(s)	159, 294, 537
FriOI	GRGCYC	1 cut(s)	267
Fsp4HI	GCNGC	3 cut(s)	159, 294, 537
GluI	GCNGC	3 cut(s)	159, 294, 537
GsuI	CTGGAG	1 cut(s)	215
HaeIII	GGCC	1 cut(s)	390
HapII	CCGG	1 cut(s)	175
Hin1II	CATG	1 cut(s)	418
HinfI	GANTC	1 cut(s)	422
HpaII	CCGG	1 cut(s)	175
Hpy166II	GTNNAC	3 cut(s)	91, 284, 374
Hpy188I	TCNGA	1 cut(s)	343
Hpy8I	GTNNAC	3 cut(s)	91, 284, 374
HpyCH4V	TGCA	4 cut(s)	35, 44, 191, 381
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 387
HpyF3I	CTNAG	1 cut(s)	470
Hsp92II	CATG	1 cut(s)	418
Ksp22I	TGATCA	1 cut(s)	124
Kzo9I	GATC	3 cut(s)	48, 124, 303
LmnI	GCTCC	1 cut(s)	262
LpnPI	CCDG	5 cut(s)	179, 188, 323, 404, 436
Lsp1109I	GCAGC	3 cut(s)	145, 280, 523
LweI	GCATC	1 cut(s)	178
MaeIII	GTNAC	1 cut(s)	473
MalI	GATC	3 cut(s)	50, 126, 305
MboI	GATC	3 cut(s)	48, 124, 303
MboII	GAAGA	2 cut(s)	431, 538
MhlI	GDGCHC	1 cut(s)	267
MluCI	AATT	3 cut(s)	149, 350, 564
MlyI	GAGTC	1 cut(s)	431
MnlI	CCTC	2 cut(s)	262, 498
MseI	TTAA	3 cut(s)	168, 215, 531
MspI	CCGG	1 cut(s)	175
MspR9I	CCNGG	1 cut(s)	175
MwoI	GCNNNNNNNGC	2 cut(s)	41, 387
NciI	CCSGG	1 cut(s)	175
NdeI	CATATG	1 cut(s)	289
NdeII	GATC	3 cut(s)	48, 124, 303
NlaIII	CATG	1 cut(s)	418
NlaIV	GGNNCC	1 cut(s)	264
NmuCI	GTSAC	1 cut(s)	473
PkrI	GCNGC	3 cut(s)	160, 295, 538
PleI	GAGTC	1 cut(s)	430
PpsI	GAGTC	1 cut(s)	430
PsiI	TTATAA	1 cut(s)	513
PspN4I	GGNNCC	1 cut(s)	264
PspPI	GGNCC	1 cut(s)	281
SaqAI	TTAA	3 cut(s)	168, 215, 531
SatI	GCNGC	3 cut(s)	159, 294, 537
Sau3AI	GATC	3 cut(s)	48, 124, 303
Sau96I	GGNCC	1 cut(s)	281
SchI	GAGTC	1 cut(s)	431
ScrFI	CCNGG	1 cut(s)	175
SduI	GDGCHC	1 cut(s)	267
SetI	ASST	7 cut(s)	254, 278, 396, 439, 461, 519, 538
SfaNI	GCATC	1 cut(s)	178
SfcI	CTRYAG	1 cut(s)	460
SinI	GGWCC	1 cut(s)	281
Sse9I	AATT	3 cut(s)	149, 350, 564
SspI	AATATT	1 cut(s)	76
StyD4I	CCNGG	1 cut(s)	173
TaqI	TCGA	2 cut(s)	110, 348
TasI	AATT	3 cut(s)	149, 350, 564
Tru1I	TTAA	3 cut(s)	168, 215, 531
Tru9I	TTAA	3 cut(s)	168, 215, 531
TscAI	CASTG	4 cut(s)	37, 51, 198, 376
TseFI	GTSAC	1 cut(s)	473
TseI	GCWGC	3 cut(s)	158, 293, 536
Tsp45I	GTSAC	1 cut(s)	473
TspDTI	ATGAA	3 cut(s)	17, 49, 96
TspGWI	ACGGA	1 cut(s)	445
TspRI	CASTG	4 cut(s)	37, 51, 198, 376
VpaK11BI	GGWCC	1 cut(s)	281
XapI	RAATTY	2 cut(s)	350, 564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.