Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001315

Physical Location & Seq

Genomic Coordinates Forward (+)

35121550 .. 35122416

Gene Structure 867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19440

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGCTTGTGTTTTTTAATTGGGCGATTAAGAAGCCAAACGTAGCCAAGCATGTTCATACATACCATATAATCCTCAAAGCATTGGGTAGAAGAAAGTTCTTTAATTATATGATGCAAGTTTTGAATGACATGAGGAGCCGAGACATACGTCTTGATTTGGAGACTCTGTCAATTGTGATGGATAGTTTTGTGAGGGCTGGACATGTCTCGAAAGCAATCCAAGTGTTCCGAAACTCGGCAGAGTTCGGGTTGGATTGCGATACTGAGTGTCTGAATGTGCTTCTGCAGTGTCTGTGTCGGCGGTCTCATTTAGTGGCTGCAAATTCGTTTCTTGATTCAGTGAAGGGGAAAGTGCGATTCAATGGCACTACACATAACATTGTTATTGGTAGAGTTGGTGAGATGGAGAGGACTTTGGAAGCAATGGTAGCAGATGGGTTTAGTCCTGATAGTGCAACTTTCAGTTACATTCTTGAGGGTCTAGGAAGAGCTGATCGGATTGACGATGCAGTTGAGATTTTTGAGAGCATGAAGGGGAAAGGTTGCGTGCCAGACACCATTACATACAATGCAGTGATCTCTAACTTTATCTCTGATGAGAATATTGATGAATGTGTAAACTACTTCATGAGTATGTCGAGTAATGCTTGCGATCCAAATGTTTATACTTATACCAAATTGATTGCTGGTTTCCTTAAAGCCCGGAAAGTGGCGGATGCATTGGAGATGTTTGATGAGATGTTAAGTAGAGGATTTGTTCCTACTACGGGGACTATAACCTCTTTTATGGAACCCTTATGTAGCTATGGTCCACCATATGCTACTATGATGATCTACCAGAAAGCAATTAAGAAAGGTCGGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

288

Amino Acids

32.46

Weight (kDa)

7.57

Isoelectric Point (pI)

34.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	139 - 195	2.5e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	145 - 178	1.3e-06	PPR repeat
PPR_2	PF13041	150 - 196	1.8e-10	PPR repeat family
PPR_long	PF17177	165 - 263	9.8e-08	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	184 - 233	7e-12	PPR repeat family
PPR_1	PF12854	217 - 247	6.5e-08	PPR repeat
PPR	PF01535	222 - 252	2e-06	PPR repeat
PPR_2	PF13041	223 - 267	3e-09	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43820
fragaria_vesca	FvH4_5g24880 FvH4_5g25350 FvH4_5g25520
malus_domestica	MD16G1284000.v1.1
prunus_persica	Prupe.5G009500_v2.0.a1
pyrus_communis	pycom16g26010
rosa_chinensis	RchiOBHm_Chr6g0271861 RchiOBHm_Chr6g0271871 RchiOBHm_Chr6g0271981 RchiOBHm_Chr7g0215761 RchiOBHm_Chr7g0215771 RchiOBHm_Chr7g0215901 RchiOBHm_Chr7g0217231 RchiOBHm_Chr7g0219831
rosa_laevigata	RLG00000002611 RLG00000002625 RLG00000013566
rosa_multiflora	Rmu_sc0000055.1_g000008 Rmu_sc0000055.1_g000009 Rmu_sc0000516.1_g000005 Rmu_sc0000516.1_g000006 Rmu_sc0004379.1_g000016 Rmu_sc0006240.1_g000009 Rmu_sc0007857.1_g000006 Rmu_sc0016364.1_g000002 Rmu_sc0016407.1_g000001 Rmu_sc0023052.1_g000001
rosa_roxburghii	Rroxscaffold_2G00114980 Rroxscaffold_3G00243850 Rroxscaffold_5G00342010 Rroxscaffold_7G00186190
rosa_rugosa	Rorug06G0064100 Rorug07G0156600 Rorug07G0157900 Rorug07G0158000
rosa_samantha	Rh1BG116200 Rh6AG181800 Rh6BG185400 Rh6CG182900 Rh6CG183200 Rh6DG174300 Rh6DG174600 Rh7AG294600 Rh7AG306400 Rh7AG306500 Rh7BG286400 Rh7CG314600 Rh7CG325500 Rh7DG296900 Rh7DG299400 Rh7DG306200
rosa_wichuraiana	Rw6G015640 Rw7G026030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	301, 713
AclWI	GGATC	1 cut(s)	647
AcsI	RAATTY	1 cut(s)	322
AfiI	CCNNNNNNNGG	3 cut(s)	235, 709, 767
AflIII	ACRYGT	1 cut(s)	202
AgsI	TTSAA	2 cut(s)	124, 361
AluBI	AGCT	2 cut(s)	491, 804
AluI	AGCT	2 cut(s)	491, 804
Alw26I	GTCTC	4 cut(s)	135, 155, 211, 309
AlwI	GGATC	1 cut(s)	647
AlwNI	CAGNNNCTG	1 cut(s)	292
ApeKI	GCWGC	1 cut(s)	317
ApoI	RAATTY	1 cut(s)	322
AspS9I	GGNCC	1 cut(s)	809
AsuC2I	CCSGG	1 cut(s)	703
AsuHPI	GGTGA	1 cut(s)	410
AvaII	GGWCC	1 cut(s)	809
BbvI	GCAGC	1 cut(s)	304
BccI	CCATC	3 cut(s)	172, 397, 428
BcnI	CCSGG	1 cut(s)	703
BcoDI	GTCTC	4 cut(s)	135, 155, 211, 309
BfaI	CTAG	1 cut(s)	482
BfmI	CTRYAG	1 cut(s)	284
BisI	GCNGC	1 cut(s)	318
BlsI	GCNGC	1 cut(s)	319
Bme1390I	CCNGG	1 cut(s)	703
Bme18I	GGWCC	1 cut(s)	809
BmgT120I	GGNCC	1 cut(s)	809
BmiI	GGNNCC	2 cut(s)	137, 792
BmrFI	CCNGG	1 cut(s)	703
BmsI	GCATC	3 cut(s)	102, 496, 706
BoxI	GACNNNNGTC	1 cut(s)	147
BpuEI	CTTGAG	1 cut(s)	494
BpuMI	CCSGG	1 cut(s)	703
BsaI	GGTCTC	1 cut(s)	309
BsaXI	ACNNNNNCTCC	2 cut(s)	152, 182
Bsc4I	CCNNNNNNNGG	3 cut(s)	235, 709, 767
Bse3DI	GCAATG	1 cut(s)	429
BseGI	GGATG	2 cut(s)	721, 867
BseLI	CCNNNNNNNGG	3 cut(s)	235, 709, 767
BseMI	GCAATG	1 cut(s)	429
BseMII	CTCAG	1 cut(s)	255
BseRI	GAGGAG	1 cut(s)	148
BseXI	GCAGC	1 cut(s)	304
BsiSI	CCGG	1 cut(s)	703
BslFI	GGGAC	1 cut(s)	784
BslI	CCNNNNNNNGG	3 cut(s)	235, 709, 767
BsmAI	GTCTC	4 cut(s)	135, 155, 211, 309
BsmFI	GGGAC	1 cut(s)	784
Bso31I	GGTCTC	1 cut(s)	309
Bsp143I	GATC	4 cut(s)	493, 576, 652, 831
BspACI	CCGC	2 cut(s)	301, 713
BspCNI	CTCAG	1 cut(s)	256
BspHI	TCATGA	1 cut(s)	627
BspLI	GGNNCC	2 cut(s)	137, 792
BspMAI	CTGCAG	1 cut(s)	288
BspPI	GGATC	1 cut(s)	647
BspQI	GCTCTTC	1 cut(s)	481
BspTNI	GGTCTC	1 cut(s)	309
BsrDI	GCAATG	1 cut(s)	429
BssMI	GATC	4 cut(s)	493, 576, 652, 831
Bst6I	CTCTTC	1 cut(s)	481
BstC8I	GCNNGC	2 cut(s)	548, 649
BstDEI	CTNAG	1 cut(s)	264
BstF5I	GGATG	2 cut(s)	721, 867
BstKTI	GATC	4 cut(s)	496, 579, 655, 834
BstMAI	GTCTC	4 cut(s)	135, 155, 211, 309
BstMBI	GATC	4 cut(s)	493, 576, 652, 831
BstMWI	GCNNNNNNNGC	1 cut(s)	428
BstNSI	RCATGY	2 cut(s)	53, 206
BstPAI	GACNNNNGTC	1 cut(s)	147
BstSCI	CCNGG	1 cut(s)	701
BstSFI	CTRYAG	1 cut(s)	284
BstV1I	GCAGC	1 cut(s)	304
BtsCI	GGATG	2 cut(s)	721, 867
BtsI	GCAGTG	2 cut(s)	293, 579
BtsIMutI	CAGTG	3 cut(s)	293, 345, 579
Cac8I	GCNNGC	2 cut(s)	548, 649
CaiI	CAGNNNCTG	1 cut(s)	292
CciI	TCATGA	1 cut(s)	627
Cfr13I	GGNCC	1 cut(s)	809
CviAII	CATG	5 cut(s)	50, 130, 203, 529, 628
CviJI	RGCY	8 cut(s)	34, 44, 138, 197, 317, 491, 701, 804
CviKI_1	RGCY	8 cut(s)	34, 44, 138, 197, 317, 491, 701, 804
DdeI	CTNAG	1 cut(s)	264
DpnI	GATC	4 cut(s)	495, 578, 654, 833
DpnII	GATC	4 cut(s)	493, 576, 652, 831
Eam1104I	CTCTTC	1 cut(s)	481
EarI	CTCTTC	1 cut(s)	481
EciI	GGCGGA	1 cut(s)	728
Eco31I	GGTCTC	1 cut(s)	309
Eco47I	GGWCC	1 cut(s)	809
EcoT22I	ATGCAT	1 cut(s)	721
FaeI	CATG	5 cut(s)	53, 133, 206, 532, 631
FaqI	GGGAC	1 cut(s)	784
FatI	CATG	5 cut(s)	49, 129, 202, 528, 627
FauNDI	CATATG	1 cut(s)	817
Fnu4HI	GCNGC	1 cut(s)	318
FokI	GGATG	1 cut(s)	728
Fsp4HI	GCNGC	1 cut(s)	318
FspBI	CTAG	1 cut(s)	482
GluI	GCNGC	1 cut(s)	318
HapII	CCGG	1 cut(s)	703
Hin1II	CATG	5 cut(s)	53, 133, 206, 532, 631
HinfI	GANTC	3 cut(s)	163, 335, 357
HpaII	CCGG	1 cut(s)	703
HphI	GGTGA	1 cut(s)	410
Hpy166II	GTNNAC	2 cut(s)	619, 812
Hpy188I	TCNGA	5 cut(s)	230, 273, 498, 595, 861
Hpy188III	TCNNGA	6 cut(s)	152, 208, 332, 446, 473, 628
Hpy8I	GTNNAC	2 cut(s)	619, 812
HpyAV	CCTTC	2 cut(s)	337, 526
HpyCH4IV	ACGT	2 cut(s)	39, 148
HpyCH4V	TGCA	7 cut(s)	115, 286, 320, 455, 509, 572, 719
HpyF10VI	GCNNNNNNNGC	1 cut(s)	428
HpyF3I	CTNAG	1 cut(s)	264
HpySE526I	ACGT	2 cut(s)	39, 148
Hsp92II	CATG	5 cut(s)	53, 133, 206, 532, 631
Kzo9I	GATC	4 cut(s)	493, 576, 652, 831
LguI	GCTCTTC	1 cut(s)	481
LmnI	GCTCC	1 cut(s)	135
LpnPI	CCDG	6 cut(s)	183, 459, 564, 672, 716, 851
Lsp1109I	GCAGC	1 cut(s)	304
LweI	GCATC	3 cut(s)	102, 496, 706
MaeI	CTAG	1 cut(s)	482
MaeII	ACGT	2 cut(s)	39, 148
MaeIII	GTNAC	1 cut(s)	464
MalI	GATC	4 cut(s)	495, 578, 654, 833
MboI	GATC	4 cut(s)	493, 576, 652, 831
MboII	GAAGA	2 cut(s)	102, 498
MfeI	CAATTG	1 cut(s)	171
MluCI	AATT	6 cut(s)	16, 103, 171, 322, 677, 846
MlyI	GAGTC	1 cut(s)	157
MmeI	TCCRAC	2 cut(s)	231, 839
MnlI	CCTC	7 cut(s)	83, 126, 186, 402, 469, 743, 790
Mph1103I	ATGCAT	1 cut(s)	721
MseI	TTAA	6 cut(s)	15, 27, 102, 696, 743, 849
MslI	CAYNNNNRTG	1 cut(s)	632
MspI	CCGG	1 cut(s)	703
MspR9I	CCNGG	1 cut(s)	703
MunI	CAATTG	1 cut(s)	171
MwoI	GCNNNNNNNGC	1 cut(s)	428
NciI	CCSGG	1 cut(s)	703
NdeI	CATATG	1 cut(s)	817
NdeII	GATC	4 cut(s)	493, 576, 652, 831
NlaIII	CATG	5 cut(s)	53, 133, 206, 532, 631
NlaIV	GGNNCC	2 cut(s)	137, 792
NmeAIII	GCCGAG	2 cut(s)	164, 215
NsiI	ATGCAT	1 cut(s)	721
NspI	RCATGY	2 cut(s)	53, 206
PagI	TCATGA	1 cut(s)	627
PciI	ACATGT	1 cut(s)	202
PciSI	GCTCTTC	1 cut(s)	481
PfeI	GAWTC	2 cut(s)	335, 357
PflFI	GACNNNGTC	1 cut(s)	166
PkrI	GCNGC	1 cut(s)	319
PleI	GAGTC	1 cut(s)	157
PpsI	GAGTC	1 cut(s)	157
PscI	ACATGT	1 cut(s)	202
PshAI	GACNNNNGTC	1 cut(s)	147
PspN4I	GGNNCC	2 cut(s)	137, 792
PspPI	GGNCC	1 cut(s)	809
PstI	CTGCAG	1 cut(s)	288
PstNI	CAGNNNCTG	1 cut(s)	292
PsyI	GACNNNGTC	1 cut(s)	166
RseI	CAYNNNNRTG	1 cut(s)	632
SapI	GCTCTTC	1 cut(s)	481
SaqAI	TTAA	6 cut(s)	15, 27, 102, 696, 743, 849
SatI	GCNGC	1 cut(s)	318
Sau3AI	GATC	4 cut(s)	493, 576, 652, 831
Sau96I	GGNCC	1 cut(s)	809
SchI	GAGTC	1 cut(s)	157
ScrFI	CCNGG	1 cut(s)	703
SetI	ASST	7 cut(s)	42, 151, 493, 544, 782, 806, 859
SfaNI	GCATC	3 cut(s)	102, 496, 706
SfcI	CTRYAG	1 cut(s)	284
SinI	GGWCC	1 cut(s)	809
SmiMI	CAYNNNNRTG	1 cut(s)	632
SmlI	CTYRAG	1 cut(s)	473
SmoI	CTYRAG	1 cut(s)	473
Sse9I	AATT	6 cut(s)	16, 103, 171, 322, 677, 846
SsiI	CCGC	2 cut(s)	301, 713
SspI	AATATT	1 cut(s)	604
SspMI	CTAG	1 cut(s)	482
StyD4I	CCNGG	1 cut(s)	701
TaiI	ACGT	2 cut(s)	42, 151
TaqI	TCGA	2 cut(s)	209, 638
TasI	AATT	6 cut(s)	16, 103, 171, 322, 677, 846
TfiI	GAWTC	2 cut(s)	335, 357
Tru1I	TTAA	6 cut(s)	15, 27, 102, 696, 743, 849
Tru9I	TTAA	6 cut(s)	15, 27, 102, 696, 743, 849
TscAI	CASTG	3 cut(s)	293, 345, 579
TseI	GCWGC	1 cut(s)	317
TspDTI	ATGAA	4 cut(s)	44, 545, 616, 624
TspRI	CASTG	3 cut(s)	293, 345, 579
Tth111I	GACNNNGTC	1 cut(s)	166
VpaK11BI	GGWCC	1 cut(s)	809
XapI	RAATTY	1 cut(s)	322
XceI	RCATGY	2 cut(s)	53, 206
XspI	CTAG	1 cut(s)	482
Zsp2I	ATGCAT	1 cut(s)	721

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.