Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TPR_24 | PF23276 | 243 - 371 | 7.4e-06 | Fungal tetratrico peptide repeats |
| PPR_2 | PF13041 | 277 - 321 | 6.6e-08 | PPR repeat family |
| PPR_3 | PF13812 | 298 - 354 | 6.9e-09 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 304 - 337 | 3.2e-06 | PPR repeat |
| PPR_2 | PF13041 | 316 - 355 | 2.2e-09 | PPR repeat family |
| PPR_long | PF17177 | 324 - 423 | 6e-08 | Pentacotripeptide-repeat region of PRORP |
| PPR_2 | PF13041 | 343 - 392 | 7.5e-11 | PPR repeat family |
| PPR_1 | PF12854 | 376 - 406 | 5.1e-06 | PPR repeat |
| PPR_2 | PF13041 | 379 - 426 | 3e-09 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1359, 1620 |
| AciI | CCGC | 2 cut(s) | 450, 760 |
| AclWI | GGATC | 1 cut(s) | 1124 |
| AcsI | RAATTY | 3 cut(s) | 152, 234, 781 |
| AfaI | GTAC | 2 cut(s) | 68, 1515 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 694, 1186, 1244 |
| AflIII | ACRYGT | 1 cut(s) | 661 |
| AgsI | TTSAA | 8 cut(s) | 157, 355, 583, 820, 1105, 1505, 1599, 1633 |
| AjnI | CCWGG | 1 cut(s) | 62 |
| AluBI | AGCT | 8 cut(s) | 205, 365, 503, 968, 1281, 1363, 1501, 1624 |
| AluI | AGCT | 8 cut(s) | 205, 365, 503, 968, 1281, 1363, 1501, 1624 |
| Alw26I | GTCTC | 8 cut(s) | 51, 111, 594, 614, 614, 670, 768, 1536 |
| AlwI | GGATC | 1 cut(s) | 1124 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 751 |
| ApeKI | GCWGC | 4 cut(s) | 54, 776, 1298, 1498 |
| ApoI | RAATTY | 3 cut(s) | 152, 234, 781 |
| AspLEI | GCGC | 2 cut(s) | 17, 1377 |
| AspS9I | GGNCC | 1 cut(s) | 1286 |
| AsuC2I | CCSGG | 1 cut(s) | 1180 |
| AsuHPI | GGTGA | 6 cut(s) | 74, 84, 191, 231, 464, 887 |
| AsuII | TTCGAA | 1 cut(s) | 269 |
| AvaII | GGWCC | 1 cut(s) | 1286 |
| BaeGI | GKGCMC | 1 cut(s) | 318 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1518, 1550 |
| BbsI | GAAGAC | 1 cut(s) | 162 |
| BbvI | GCAGC | 4 cut(s) | 66, 763, 1285, 1510 |
| BccI | CCATC | 6 cut(s) | 237, 296, 631, 874, 905, 1683 |
| BceAI | ACGGC | 3 cut(s) | 9, 28, 28 |
| BciT130I | CCWGG | 1 cut(s) | 64 |
| BcnI | CCSGG | 1 cut(s) | 1180 |
| BcoDI | GTCTC | 8 cut(s) | 51, 111, 594, 614, 614, 670, 768, 1536 |
| BfaI | CTAG | 3 cut(s) | 959, 1383, 1683 |
| BfmI | CTRYAG | 3 cut(s) | 344, 743, 1567 |
| BfoI | RGCGCY | 1 cut(s) | 18 |
| BisI | GCNGC | 4 cut(s) | 55, 777, 1299, 1499 |
| BlpI | GCTNAGC | 1 cut(s) | 504 |
| BlsI | GCNGC | 4 cut(s) | 56, 778, 1300, 1500 |
| Bme1390I | CCNGG | 2 cut(s) | 64, 1180 |
| Bme18I | GGWCC | 1 cut(s) | 1286 |
| BmgT120I | GGNCC | 1 cut(s) | 1286 |
| BmiI | GGNNCC | 2 cut(s) | 596, 1269 |
| BmrFI | CCNGG | 2 cut(s) | 64, 1180 |
| BmsI | GCATC | 3 cut(s) | 561, 973, 1416 |
| BoxI | GACNNNNGTC | 1 cut(s) | 606 |
| BpiI | GAAGAC | 1 cut(s) | 162 |
| BpmI | CTGGAG | 1 cut(s) | 1220 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 504 |
| Bpu14I | TTCGAA | 1 cut(s) | 269 |
| BpuEI | CTTGAG | 1 cut(s) | 971 |
| BpuMI | CCSGG | 1 cut(s) | 1180 |
| BsaAI | YACGTR | 2 cut(s) | 332, 831 |
| BsaI | GGTCTC | 1 cut(s) | 768 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 611, 641 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 694, 1186, 1244 |
| Bse1I | ACTGG | 2 cut(s) | 166, 1203 |
| Bse3DI | GCAATG | 5 cut(s) | 74, 465, 906, 1056, 1126 |
| BseBI | CCWGG | 1 cut(s) | 64 |
| BseGI | GGATG | 3 cut(s) | 307, 1340, 1694 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 694, 1186, 1244 |
| BseMI | GCAATG | 5 cut(s) | 74, 465, 906, 1056, 1126 |
| BseMII | CTCAG | 2 cut(s) | 64, 714 |
| BseNI | ACTGG | 2 cut(s) | 166, 1203 |
| BseRI | GAGGAG | 1 cut(s) | 607 |
| BseSI | GKGCMC | 1 cut(s) | 318 |
| BseXI | GCAGC | 4 cut(s) | 66, 763, 1285, 1510 |
| BsiSI | CCGG | 1 cut(s) | 1180 |
| BslFI | GGGAC | 1 cut(s) | 1261 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 694, 1186, 1244 |
| BsmAI | GTCTC | 8 cut(s) | 51, 111, 594, 614, 614, 670, 768, 1536 |
| BsmBI | CGTCTC | 2 cut(s) | 51, 614 |
| BsmFI | GGGAC | 1 cut(s) | 1261 |
| BsmI | GAATGC | 1 cut(s) | 1198 |
| Bso31I | GGTCTC | 1 cut(s) | 768 |
| Bsp119I | TTCGAA | 1 cut(s) | 269 |
| Bsp1286I | GDGCHC | 1 cut(s) | 318 |
| Bsp143I | GATC | 4 cut(s) | 970, 1053, 1129, 1308 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 504 |
| BspACI | CCGC | 2 cut(s) | 450, 760 |
| BspCNI | CTCAG | 2 cut(s) | 63, 715 |
| BspLI | GGNNCC | 2 cut(s) | 596, 1269 |
| BspMAI | CTGCAG | 1 cut(s) | 747 |
| BspPI | GGATC | 1 cut(s) | 1124 |
| BspQI | GCTCTTC | 1 cut(s) | 958 |
| BspT104I | TTCGAA | 1 cut(s) | 269 |
| BspTNI | GGTCTC | 1 cut(s) | 768 |
| BsrDI | GCAATG | 5 cut(s) | 74, 465, 906, 1056, 1126 |
| BsrI | ACTGG | 2 cut(s) | 166, 1203 |
| BssMI | GATC | 4 cut(s) | 970, 1053, 1129, 1308 |
| Bst2UI | CCWGG | 1 cut(s) | 64 |
| Bst4CI | ACNGT | 1 cut(s) | 625 |
| Bst6I | CTCTTC | 3 cut(s) | 958, 1416, 1521 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1125 |
| BstBAI | YACGTR | 2 cut(s) | 332, 831 |
| BstBI | TTCGAA | 1 cut(s) | 269 |
| BstC8I | GCNNGC | 5 cut(s) | 378, 1025, 1126, 1559, 1680 |
| BstDEI | CTNAG | 3 cut(s) | 50, 504, 723 |
| BstF5I | GGATG | 3 cut(s) | 307, 1340, 1694 |
| BstH2I | RGCGCY | 1 cut(s) | 18 |
| BstHHI | GCGC | 2 cut(s) | 17, 1377 |
| BstKTI | GATC | 4 cut(s) | 973, 1056, 1132, 1311 |
| BstMAI | GTCTC | 8 cut(s) | 51, 111, 594, 614, 614, 670, 768, 1536 |
| BstMBI | GATC | 4 cut(s) | 970, 1053, 1129, 1308 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 21, 905, 1125 |
| BstNI | CCWGG | 1 cut(s) | 64 |
| BstNSI | RCATGY | 3 cut(s) | 380, 512, 665 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 606 |
| BstSCI | CCNGG | 2 cut(s) | 62, 1178 |
| BstSFI | CTRYAG | 3 cut(s) | 344, 743, 1567 |
| BstSLI | GKGCMC | 1 cut(s) | 318 |
| BstSNI | TACGTA | 1 cut(s) | 831 |
| BstV1I | GCAGC | 4 cut(s) | 66, 763, 1285, 1510 |
| BstV2I | GAAGAC | 1 cut(s) | 162 |
| BtsCI | GGATG | 3 cut(s) | 307, 1340, 1694 |
| BtsI | GCAGTG | 2 cut(s) | 38, 752 |
| BtsIMutI | CAGTG | 5 cut(s) | 38, 261, 752, 804, 1196 |
| Cac8I | GCNNGC | 5 cut(s) | 378, 1025, 1126, 1559, 1680 |
| CaiI | CAGNNNCTG | 1 cut(s) | 751 |
| CfoI | GCGC | 2 cut(s) | 17, 1377 |
| Cfr13I | GGNCC | 1 cut(s) | 1286 |
| Csp6I | GTAC | 2 cut(s) | 67, 1514 |
| CviQI | GTAC | 2 cut(s) | 67, 1514 |
| DdeI | CTNAG | 3 cut(s) | 50, 504, 723 |
| DpnI | GATC | 4 cut(s) | 972, 1055, 1131, 1310 |
| DpnII | GATC | 4 cut(s) | 970, 1053, 1129, 1308 |
| Eam1104I | CTCTTC | 3 cut(s) | 958, 1416, 1521 |
| EarI | CTCTTC | 3 cut(s) | 958, 1416, 1521 |
| Eco105I | TACGTA | 1 cut(s) | 831 |
| Eco31I | GGTCTC | 1 cut(s) | 768 |
| Eco32I | GATATC | 1 cut(s) | 1453 |
| Eco47I | GGWCC | 1 cut(s) | 1286 |
| EcoRII | CCWGG | 1 cut(s) | 62 |
| EcoRV | GATATC | 1 cut(s) | 1453 |
| Esp3I | CGTCTC | 2 cut(s) | 51, 614 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 447, 479, 1613, 1645 |
| FaqI | GGGAC | 1 cut(s) | 1261 |
| FauNDI | CATATG | 1 cut(s) | 1294 |
| Fnu4HI | GCNGC | 4 cut(s) | 55, 777, 1299, 1499 |
| FokI | GGATG | 2 cut(s) | 314, 1347 |
| Fsp4HI | GCNGC | 4 cut(s) | 55, 777, 1299, 1499 |
| FspBI | CTAG | 3 cut(s) | 959, 1383, 1683 |
| GlaI | GCGC | 2 cut(s) | 16, 1376 |
| GluI | GCNGC | 4 cut(s) | 55, 777, 1299, 1499 |
| GsuI | CTGGAG | 1 cut(s) | 1220 |
| HaeII | RGCGCY | 1 cut(s) | 18 |
| HapII | CCGG | 1 cut(s) | 1180 |
| HhaI | GCGC | 2 cut(s) | 17, 1377 |
| Hin6I | GCGC | 2 cut(s) | 15, 1375 |
| HinP1I | GCGC | 2 cut(s) | 15, 1375 |
| HinfI | GANTC | 5 cut(s) | 118, 266, 284, 816, 1529 |
| HpaII | CCGG | 1 cut(s) | 1180 |
| HphI | GGTGA | 6 cut(s) | 74, 84, 191, 231, 464, 887 |
| Hpy166II | GTNNAC | 3 cut(s) | 1096, 1289, 1481 |
| Hpy188I | TCNGA | 6 cut(s) | 689, 732, 975, 1334, 1450, 1700 |
| Hpy188III | TCNNGA | 7 cut(s) | 179, 611, 667, 923, 950, 1105, 1383 |
| Hpy8I | GTNNAC | 3 cut(s) | 1096, 1289, 1481 |
| Hpy99I | CGWCG | 2 cut(s) | 323, 1653 |
| HpyAV | CCTTC | 6 cut(s) | 95, 198, 271, 349, 796, 1003 |
| HpyCH4III | ACNGT | 1 cut(s) | 625 |
| HpyCH4IV | ACGT | 3 cut(s) | 331, 607, 830 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 21, 905, 1125 |
| HpyF3I | CTNAG | 3 cut(s) | 50, 504, 723 |
| HpySE526I | ACGT | 3 cut(s) | 331, 607, 830 |
| HspAI | GCGC | 2 cut(s) | 15, 1375 |
| Kzo9I | GATC | 4 cut(s) | 970, 1053, 1129, 1308 |
| LguI | GCTCTTC | 1 cut(s) | 958 |
| LmnI | GCTCC | 1 cut(s) | 594 |
| Lsp1109I | GCAGC | 4 cut(s) | 66, 763, 1285, 1510 |
| LweI | GCATC | 3 cut(s) | 561, 973, 1416 |
| MaeI | CTAG | 3 cut(s) | 959, 1383, 1683 |
| MaeII | ACGT | 3 cut(s) | 331, 607, 830 |
| MaeIII | GTNAC | 3 cut(s) | 216, 941, 1580 |
| MalI | GATC | 4 cut(s) | 972, 1055, 1131, 1310 |
| MboI | GATC | 4 cut(s) | 970, 1053, 1129, 1308 |
| MboII | GAAGA | 7 cut(s) | 162, 165, 188, 561, 975, 1433, 1538 |
| MhlI | GDGCHC | 1 cut(s) | 318 |
| MlyI | GAGTC | 2 cut(s) | 112, 1538 |
| MmeI | TCCRAC | 2 cut(s) | 690, 1312 |
| MseI | TTAA | 9 cut(s) | 123, 474, 486, 561, 792, 1173, 1220, 1577, 1638 |
| MslI | CAYNNNNRTG | 1 cut(s) | 144 |
| MspI | CCGG | 1 cut(s) | 1180 |
| MspR9I | CCNGG | 2 cut(s) | 64, 1180 |
| Mva1269I | GAATGC | 1 cut(s) | 1198 |
| MvaI | CCWGG | 1 cut(s) | 64 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 21, 905, 1125 |
| NciI | CCSGG | 1 cut(s) | 1180 |
| NdeI | CATATG | 1 cut(s) | 1294 |
| NdeII | GATC | 4 cut(s) | 970, 1053, 1129, 1308 |
| NlaIV | GGNNCC | 2 cut(s) | 596, 1269 |
| NmeAIII | GCCGAG | 2 cut(s) | 623, 674 |
| NspI | RCATGY | 3 cut(s) | 380, 512, 665 |
| NspV | TTCGAA | 1 cut(s) | 269 |
| PaeI | GCATGC | 1 cut(s) | 380 |
| PciI | ACATGT | 1 cut(s) | 661 |
| PciSI | GCTCTTC | 1 cut(s) | 958 |
| PctI | GAATGC | 1 cut(s) | 1198 |
| PfeI | GAWTC | 3 cut(s) | 266, 284, 816 |
| PflFI | GACNNNGTC | 1 cut(s) | 625 |
| PkrI | GCNGC | 4 cut(s) | 56, 778, 1300, 1500 |
| PleI | GAGTC | 2 cut(s) | 112, 1537 |
| PpsI | GAGTC | 2 cut(s) | 112, 1537 |
| Ppu21I | YACGTR | 2 cut(s) | 332, 831 |
| PscI | ACATGT | 1 cut(s) | 661 |
| PshAI | GACNNNNGTC | 1 cut(s) | 606 |
| PsiI | TTATAA | 2 cut(s) | 1359, 1620 |
| Psp6I | CCWGG | 1 cut(s) | 62 |
| PspGI | CCWGG | 1 cut(s) | 62 |
| PspN4I | GGNNCC | 2 cut(s) | 596, 1269 |
| PspPI | GGNCC | 1 cut(s) | 1286 |
| PstI | CTGCAG | 1 cut(s) | 747 |
| PstNI | CAGNNNCTG | 1 cut(s) | 751 |
| PsyI | GACNNNGTC | 1 cut(s) | 625 |
| RsaI | GTAC | 2 cut(s) | 68, 1515 |
| RsaNI | GTAC | 2 cut(s) | 67, 1514 |
| RseI | CAYNNNNRTG | 1 cut(s) | 144 |
| SapI | GCTCTTC | 1 cut(s) | 958 |
| SaqAI | TTAA | 9 cut(s) | 123, 474, 486, 561, 792, 1173, 1220, 1577, 1638 |
| SatI | GCNGC | 4 cut(s) | 55, 777, 1299, 1499 |
| Sau3AI | GATC | 4 cut(s) | 970, 1053, 1129, 1308 |
| Sau96I | GGNCC | 1 cut(s) | 1286 |
| SchI | GAGTC | 2 cut(s) | 112, 1538 |
| ScrFI | CCNGG | 2 cut(s) | 64, 1180 |
| SduI | GDGCHC | 1 cut(s) | 318 |
| SfaNI | GCATC | 3 cut(s) | 561, 973, 1416 |
| SfcI | CTRYAG | 3 cut(s) | 344, 743, 1567 |
| SfuI | TTCGAA | 1 cut(s) | 269 |
| SinI | GGWCC | 1 cut(s) | 1286 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 144 |
| SmlI | CTYRAG | 1 cut(s) | 950 |
| SmoI | CTYRAG | 1 cut(s) | 950 |
| SnaBI | TACGTA | 1 cut(s) | 831 |
| SphI | GCATGC | 1 cut(s) | 380 |
| SsiI | CCGC | 2 cut(s) | 450, 760 |
| SspI | AATATT | 2 cut(s) | 1081, 1636 |
| SspMI | CTAG | 3 cut(s) | 959, 1383, 1683 |
| StyD4I | CCNGG | 2 cut(s) | 62, 1178 |
| TaaI | ACNGT | 1 cut(s) | 625 |
| TaiI | ACGT | 3 cut(s) | 334, 610, 833 |
| TatI | WGTACW | 1 cut(s) | 1513 |
| TfiI | GAWTC | 3 cut(s) | 266, 284, 816 |
| Tru1I | TTAA | 9 cut(s) | 123, 474, 486, 561, 792, 1173, 1220, 1577, 1638 |
| Tru9I | TTAA | 9 cut(s) | 123, 474, 486, 561, 792, 1173, 1220, 1577, 1638 |
| TscAI | CASTG | 5 cut(s) | 45, 268, 752, 804, 1203 |
| TseI | GCWGC | 4 cut(s) | 54, 776, 1298, 1498 |
| TspDTI | ATGAA | 7 cut(s) | 9, 77, 156, 503, 774, 1022, 1101 |
| TspRI | CASTG | 5 cut(s) | 45, 268, 752, 804, 1203 |
| Tth111I | GACNNNGTC | 1 cut(s) | 625 |
| VpaK11BI | GGWCC | 1 cut(s) | 1286 |
| XapI | RAATTY | 3 cut(s) | 152, 234, 781 |
| XbaI | TCTAGA | 1 cut(s) | 1382 |
| XceI | RCATGY | 3 cut(s) | 380, 512, 665 |
| XspI | CTAG | 3 cut(s) | 959, 1383, 1683 |