Rmu_sc0000516.1_g000005

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000516.1
Physical Location & Seq
Forward (+)
26793 .. 27359
567 bp
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UTR
Exon/CDS
Intron
Rmu_sc0000516.1_g000005.1.cds

Sequence Viewer

Length: 567 bp
atgcccgacgagaaattgtgtggagtttttcttcagaaattgaagggtatagctgtaattgagcatgttctcgacaatgttggtgtggatttgagtgttgatgttgttgcacaagtagtgaatagaggttgtttaggcggtcaagcaatgcttgtgttttttaattgggcgattaagaagccaaatgtagctaaacatgttcatacataccatataatcctcaaagcattgggtagaagaaaattctttaattatatgatgcaagttttgaatgacatgaggagccgagacatacgtctcgatttggagactctgtcgattgtgatggatagttttgtgagggctggacatgtctcgaaagcaatccaagtgttccgaaacttggaagagtttgggttggattgcgatactgagtgtctgaatgtgcttctgcagtgtctgtgtcggcagtctcatgtagtggctgcaaattcatttcttaattcagtgaaggggaaggtgcgattcaatggcactacatataacattgttattggtgggtggtcgaaatatggtaagagttggtga

Protein Analysis

188

Amino Acids

21.2

Weight (kDa)

9.2

Isoelectric Point (pI)

32.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 138
AcsI RAATTY 2 cut(s) 242, 469
AcuI CTGAAG 1 cut(s) 17
AfiI CCNNNNNNNGG 1 cut(s) 382
AflIII ACRYGT 2 cut(s) 196, 349
AgsI TTSAA 3 cut(s) 43, 271, 508
AluBI AGCT 2 cut(s) 53, 191
AluI AGCT 2 cut(s) 53, 191
Alw26I GTCTC 5 cut(s) 282, 302, 302, 358, 456
AlwNI CAGNNNCTG 1 cut(s) 439
ApeKI GCWGC 1 cut(s) 464
ApoI RAATTY 2 cut(s) 242, 469
BbvI GCAGC 1 cut(s) 451
BccI CCATC 1 cut(s) 319
BcoDI GTCTC 5 cut(s) 282, 302, 302, 358, 456
BfmI CTRYAG 1 cut(s) 431
BisI GCNGC 1 cut(s) 465
BlsI GCNGC 1 cut(s) 466
BmiI GGNNCC 1 cut(s) 284
BmsI GCATC 1 cut(s) 249
BoxI GACNNNNGTC 1 cut(s) 294
BsaXI ACNNNNNCTCC 2 cut(s) 299, 329
Bsc4I CCNNNNNNNGG 1 cut(s) 382
Bse3DI GCAATG 1 cut(s) 153
BseLI CCNNNNNNNGG 1 cut(s) 382
BseMI GCAATG 1 cut(s) 153
BseMII CTCAG 1 cut(s) 402
BseRI GAGGAG 1 cut(s) 295
BseXI GCAGC 1 cut(s) 451
BslI CCNNNNNNNGG 1 cut(s) 382
BsmAI GTCTC 5 cut(s) 282, 302, 302, 358, 456
BsmBI CGTCTC 1 cut(s) 302
BspACI CCGC 1 cut(s) 138
BspCNI CTCAG 1 cut(s) 403
BspLI GGNNCC 1 cut(s) 284
BspMAI CTGCAG 1 cut(s) 435
BsrDI GCAATG 1 cut(s) 153
Bst6I CTCTTC 1 cut(s) 381
BstDEI CTNAG 1 cut(s) 411
BstMAI GTCTC 5 cut(s) 282, 302, 302, 358, 456
BstNSI RCATGY 3 cut(s) 68, 200, 353
BstPAI GACNNNNGTC 1 cut(s) 294
BstSFI CTRYAG 1 cut(s) 431
BstV1I GCAGC 1 cut(s) 451
BtsI GCAGTG 1 cut(s) 440
BtsIMutI CAGTG 2 cut(s) 440, 492
CaiI CAGNNNCTG 1 cut(s) 439
CviAII CATG 5 cut(s) 65, 197, 277, 350, 455
CviJI RGCY 6 cut(s) 53, 181, 191, 285, 344, 464
CviKI_1 RGCY 6 cut(s) 53, 181, 191, 285, 344, 464
DdeI CTNAG 1 cut(s) 411
Eam1104I CTCTTC 1 cut(s) 381
EarI CTCTTC 1 cut(s) 381
Eco57I CTGAAG 1 cut(s) 17
Esp3I CGTCTC 1 cut(s) 302
FaeI CATG 5 cut(s) 68, 200, 280, 353, 458
FalI AAGNNNNNCTT 2 cut(s) 135, 167
FatI CATG 5 cut(s) 64, 196, 276, 349, 454
Fnu4HI GCNGC 1 cut(s) 465
Fsp4HI GCNGC 1 cut(s) 465
GluI GCNGC 1 cut(s) 465
Hin1II CATG 5 cut(s) 68, 200, 280, 353, 458
HinfI GANTC 2 cut(s) 310, 504
Hpy188I TCNGA 3 cut(s) 36, 377, 420
Hpy188III TCNNGA 3 cut(s) 71, 299, 355
Hpy99I CGWCG 1 cut(s) 11
HpyAV CCTTC 3 cut(s) 37, 484, 490
HpyCH4IV ACGT 1 cut(s) 295
HpyCH4V TGCA 4 cut(s) 110, 262, 433, 467
HpyF3I CTNAG 1 cut(s) 411
HpySE526I ACGT 1 cut(s) 295
Hsp92II CATG 5 cut(s) 68, 200, 280, 353, 458
LmnI GCTCC 1 cut(s) 282
LpnPI CCDG 1 cut(s) 330
Lsp1109I GCAGC 1 cut(s) 451
LweI GCATC 1 cut(s) 249
MaeII ACGT 1 cut(s) 295
MboII GAAGA 3 cut(s) 23, 249, 398
MluCI AATT 8 cut(s) 14, 38, 57, 163, 242, 250, 469, 481
MlyI GAGTC 1 cut(s) 304
MmeI TCCRAC 1 cut(s) 378
MnlI CCTC 4 cut(s) 119, 230, 273, 333
MseI TTAA 4 cut(s) 162, 174, 249, 480
NlaIII CATG 5 cut(s) 68, 200, 280, 353, 458
NlaIV GGNNCC 1 cut(s) 284
NmeAIII GCCGAG 1 cut(s) 311
NspI RCATGY 3 cut(s) 68, 200, 353
PciI ACATGT 2 cut(s) 196, 349
PfeI GAWTC 1 cut(s) 504
PflFI GACNNNGTC 1 cut(s) 313
PkrI GCNGC 1 cut(s) 466
PleI GAGTC 1 cut(s) 304
PpsI GAGTC 1 cut(s) 304
PscI ACATGT 2 cut(s) 196, 349
PshAI GACNNNNGTC 1 cut(s) 294
PspN4I GGNNCC 1 cut(s) 284
PstI CTGCAG 1 cut(s) 435
PstNI CAGNNNCTG 1 cut(s) 439
PsyI GACNNNGTC 1 cut(s) 313
SaqAI TTAA 4 cut(s) 162, 174, 249, 480
SatI GCNGC 1 cut(s) 465
SchI GAGTC 1 cut(s) 304
SetI ASST 5 cut(s) 55, 130, 193, 298, 501
SfaNI GCATC 1 cut(s) 249
SfcI CTRYAG 1 cut(s) 431
Sse9I AATT 8 cut(s) 14, 38, 57, 163, 242, 250, 469, 481
SsiI CCGC 1 cut(s) 138
TaiI ACGT 1 cut(s) 298
TaqI TCGA 5 cut(s) 72, 300, 317, 356, 545
TasI AATT 8 cut(s) 14, 38, 57, 163, 242, 250, 469, 481
TfiI GAWTC 1 cut(s) 504
Tru1I TTAA 4 cut(s) 162, 174, 249, 480
Tru9I TTAA 4 cut(s) 162, 174, 249, 480
TscAI CASTG 2 cut(s) 440, 492
TseI GCWGC 1 cut(s) 464
TspDTI ATGAA 2 cut(s) 191, 462
TspRI CASTG 2 cut(s) 440, 492
Tth111I GACNNNGTC 1 cut(s) 313
XapI RAATTY 2 cut(s) 242, 469
XceI RCATGY 3 cut(s) 68, 200, 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.