Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016407.1

Orthogroup ID

OG0001315

Physical Location & Seq

Genomic Coordinates Reverse (-)

380 .. 1030

Gene Structure 651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016407.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

atgtcgagtaatgcttgcgatccaaatgttgatacttataccaaattgattgctggtttccttaaagctcggaaagcggcggatgcactggagatgtttgatgagatgttaagtcgaggatttgttcctactgcggggactataacctcttttatggaacccttatgtagctatggtccaccatatgctgctatgatgatctaccagaaagcaagaaaggtcggatgtagaatatcattgactgcttataagctattgcttatgcgcctttctagatttggtaaatgtggaatgttgctaaacatttgggaagagatgcaggaatgtggttatgcttctgatatcgaagtttatgagtatgtaatcagtggactttgcaacattgggcagcttgaaaatgctgtacttgtcatggaagactctctacgaaaaggtttttgcccaagcaggcttacctatagcaaactaagtaacaaacttcttgcttcaaataagttagagagggcttataagctatacttgaagattaaagctgctcgtcgttttgacaagatacagagaatttggcgtgctagggatgtcatttctgaactgacatctgttgtgttgccaagatataatctttctttccttcgtacagccagttgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

216

Amino Acids

24.52

Weight (kDa)

9.31

Isoelectric Point (pI)

36.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43820
fragaria_vesca	FvH4_5g24880 FvH4_5g25350 FvH4_5g25520
malus_domestica	MD16G1284000.v1.1
prunus_persica	Prupe.5G009500_v2.0.a1
pyrus_communis	pycom16g26010
rosa_chinensis	RchiOBHm_Chr6g0271861 RchiOBHm_Chr6g0271871 RchiOBHm_Chr6g0271981 RchiOBHm_Chr7g0215761 RchiOBHm_Chr7g0215771 RchiOBHm_Chr7g0215901 RchiOBHm_Chr7g0217231 RchiOBHm_Chr7g0219831
rosa_laevigata	RLG00000002611 RLG00000002625 RLG00000013566
rosa_multiflora	Rmu_sc0000055.1_g000008 Rmu_sc0000055.1_g000009 Rmu_sc0000516.1_g000005 Rmu_sc0000516.1_g000006 Rmu_sc0004379.1_g000016 Rmu_sc0006240.1_g000009 Rmu_sc0007857.1_g000006 Rmu_sc0016364.1_g000002 Rmu_sc0016407.1_g000001 Rmu_sc0023052.1_g000001
rosa_roxburghii	Rroxscaffold_2G00114980 Rroxscaffold_3G00243850 Rroxscaffold_5G00342010 Rroxscaffold_7G00186190
rosa_rugosa	Rorug06G0064100 Rorug07G0156600 Rorug07G0157900 Rorug07G0158000
rosa_samantha	Rh1BG116200 Rh6AG181800 Rh6BG185400 Rh6CG182900 Rh6CG183200 Rh6DG174300 Rh6DG174600 Rh7AG294600 Rh7AG306400 Rh7AG306500 Rh7BG286400 Rh7CG314600 Rh7CG325500 Rh7DG296900 Rh7DG299400 Rh7DG306200
rosa_wichuraiana	Rw6G015640 Rw7G026030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	249, 510
AciI	CCGC	3 cut(s)	77, 80, 134
AclWI	GGATC	1 cut(s)	14
AcsI	RAATTY	1 cut(s)	561
AfaI	GTAC	2 cut(s)	405, 637
AfiI	CCNNNNNNNGG	1 cut(s)	134
AgsI	TTSAA	3 cut(s)	395, 489, 523
AluBI	AGCT	6 cut(s)	68, 171, 253, 391, 514, 533
AluI	AGCT	6 cut(s)	68, 171, 253, 391, 514, 533
AlwI	GGATC	1 cut(s)	14
ApeKI	GCWGC	3 cut(s)	188, 388, 533
ApoI	RAATTY	1 cut(s)	561
AspLEI	GCGC	1 cut(s)	267
AspS9I	GGNCC	1 cut(s)	176
AvaII	GGWCC	1 cut(s)	176
BarI	GAAGNNNNNNTAC	2 cut(s)	408, 440
BbsI	GAAGAC	1 cut(s)	423
BbvI	GCAGC	3 cut(s)	175, 400, 520
BfaI	CTAG	2 cut(s)	273, 573
BfmI	CTRYAG	1 cut(s)	457
BisI	GCNGC	4 cut(s)	78, 189, 389, 534
BlsI	GCNGC	4 cut(s)	79, 190, 390, 535
Bme18I	GGWCC	1 cut(s)	176
BmgT120I	GGNCC	1 cut(s)	176
BmiI	GGNNCC	1 cut(s)	159
BmsI	GCATC	2 cut(s)	73, 306
BpiI	GAAGAC	1 cut(s)	423
BpmI	CTGGAG	1 cut(s)	110
Bsc4I	CCNNNNNNNGG	1 cut(s)	134
Bse1I	ACTGG	2 cut(s)	93, 642
BseGI	GGATG	3 cut(s)	88, 230, 583
BseLI	CCNNNNNNNGG	1 cut(s)	134
BseNI	ACTGG	2 cut(s)	93, 642
BseXI	GCAGC	3 cut(s)	175, 400, 520
BslFI	GGGAC	1 cut(s)	151
BslI	CCNNNNNNNGG	1 cut(s)	134
BsmFI	GGGAC	1 cut(s)	151
Bsp143I	GATC	2 cut(s)	19, 198
BspACI	CCGC	3 cut(s)	77, 80, 134
BspLI	GGNNCC	1 cut(s)	159
BspPI	GGATC	1 cut(s)	14
BsrI	ACTGG	2 cut(s)	93, 642
BssMI	GATC	2 cut(s)	19, 198
Bst6I	CTCTTC	1 cut(s)	306
BstC8I	GCNNGC	3 cut(s)	16, 449, 570
BstDEI	CTNAG	1 cut(s)	467
BstF5I	GGATG	3 cut(s)	88, 230, 583
BstHHI	GCGC	1 cut(s)	267
BstKTI	GATC	2 cut(s)	22, 201
BstMBI	GATC	2 cut(s)	19, 198
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 83
BstSFI	CTRYAG	1 cut(s)	457
BstV1I	GCAGC	3 cut(s)	175, 400, 520
BstV2I	GAAGAC	1 cut(s)	423
BtsCI	GGATG	3 cut(s)	88, 230, 583
BtsIMutI	CAGTG	2 cut(s)	86, 373
Cac8I	GCNNGC	3 cut(s)	16, 449, 570
CfoI	GCGC	1 cut(s)	267
Cfr13I	GGNCC	1 cut(s)	176
Csp6I	GTAC	2 cut(s)	404, 636
CviAII	CATG	1 cut(s)	412
CviJI	RGCY	9 cut(s)	68, 171, 253, 391, 451, 506, 514, 533, 641
CviKI_1	RGCY	9 cut(s)	68, 171, 253, 391, 451, 506, 514, 533, 641
CviQI	GTAC	2 cut(s)	404, 636
DdeI	CTNAG	1 cut(s)	467
DpnI	GATC	2 cut(s)	21, 200
DpnII	GATC	2 cut(s)	19, 198
Eam1104I	CTCTTC	1 cut(s)	306
EarI	CTCTTC	1 cut(s)	306
EciI	GGCGGA	1 cut(s)	95
Eco32I	GATATC	1 cut(s)	343
Eco47I	GGWCC	1 cut(s)	176
EcoRV	GATATC	1 cut(s)	343
FaeI	CATG	1 cut(s)	415
FalI	AAGNNNNNCTT	2 cut(s)	503, 535
FaqI	GGGAC	1 cut(s)	151
FatI	CATG	1 cut(s)	411
FauI	CCCGC	1 cut(s)	127
FauNDI	CATATG	1 cut(s)	184
Fnu4HI	GCNGC	4 cut(s)	78, 189, 389, 534
FokI	GGATG	3 cut(s)	95, 237, 590
Fsp4HI	GCNGC	4 cut(s)	78, 189, 389, 534
FspBI	CTAG	2 cut(s)	273, 573
GlaI	GCGC	1 cut(s)	266
GluI	GCNGC	4 cut(s)	78, 189, 389, 534
GsuI	CTGGAG	1 cut(s)	110
HhaI	GCGC	1 cut(s)	267
Hin1II	CATG	1 cut(s)	415
Hin6I	GCGC	1 cut(s)	265
HinP1I	GCGC	1 cut(s)	265
HinfI	GANTC	1 cut(s)	419
Hpy166II	GTNNAC	2 cut(s)	179, 371
Hpy188I	TCNGA	4 cut(s)	72, 224, 340, 589
Hpy188III	TCNNGA	1 cut(s)	273
Hpy8I	GTNNAC	2 cut(s)	179, 371
Hpy99I	CGWCG	1 cut(s)	543
HpyAV	CCTTC	1 cut(s)	641
HpyCH4V	TGCA	3 cut(s)	86, 319, 378
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 83
HpyF3I	CTNAG	1 cut(s)	467
Hsp92II	CATG	1 cut(s)	415
HspAI	GCGC	1 cut(s)	265
Kzo9I	GATC	2 cut(s)	19, 198
LpnPI	CCDG	5 cut(s)	39, 74, 218, 305, 433
Lsp1109I	GCAGC	3 cut(s)	175, 400, 520
LweI	GCATC	2 cut(s)	73, 306
MaeI	CTAG	2 cut(s)	273, 573
MaeIII	GTNAC	1 cut(s)	470
MalI	GATC	2 cut(s)	21, 200
MboI	GATC	2 cut(s)	19, 198
MboII	GAAGA	3 cut(s)	323, 428, 535
MluCI	AATT	2 cut(s)	44, 561
MlyI	GAGTC	1 cut(s)	413
MmeI	TCCRAC	1 cut(s)	202
MnlI	CCTC	3 cut(s)	110, 157, 495
MseI	TTAA	3 cut(s)	63, 110, 528
MwoI	GCNNNNNNNGC	2 cut(s)	74, 83
NdeI	CATATG	1 cut(s)	184
NdeII	GATC	2 cut(s)	19, 198
NlaIII	CATG	1 cut(s)	415
NlaIV	GGNNCC	1 cut(s)	159
PkrI	GCNGC	4 cut(s)	79, 190, 390, 535
PleI	GAGTC	1 cut(s)	413
PpsI	GAGTC	1 cut(s)	413
PsiI	TTATAA	2 cut(s)	249, 510
PspN4I	GGNNCC	1 cut(s)	159
PspPI	GGNCC	1 cut(s)	176
RsaI	GTAC	2 cut(s)	405, 637
RsaNI	GTAC	2 cut(s)	404, 636
SaqAI	TTAA	3 cut(s)	63, 110, 528
SatI	GCNGC	4 cut(s)	78, 189, 389, 534
Sau3AI	GATC	2 cut(s)	19, 198
Sau96I	GGNCC	1 cut(s)	176
SchI	GAGTC	1 cut(s)	413
SfaNI	GCATC	2 cut(s)	73, 306
SfcI	CTRYAG	1 cut(s)	457
SinI	GGWCC	1 cut(s)	176
Sse9I	AATT	2 cut(s)	44, 561
SsiI	CCGC	3 cut(s)	77, 80, 134
SspMI	CTAG	2 cut(s)	273, 573
TaqI	TCGA	3 cut(s)	5, 115, 345
TasI	AATT	2 cut(s)	44, 561
TatI	WGTACW	1 cut(s)	403
TauI	GCSGC	1 cut(s)	80
Tru1I	TTAA	3 cut(s)	63, 110, 528
Tru9I	TTAA	3 cut(s)	63, 110, 528
TscAI	CASTG	2 cut(s)	93, 373
TseI	GCWGC	3 cut(s)	188, 388, 533
TspRI	CASTG	2 cut(s)	93, 373
VpaK11BI	GGWCC	1 cut(s)	176
XapI	RAATTY	1 cut(s)	561
XbaI	TCTAGA	1 cut(s)	272
XspI	CTAG	2 cut(s)	273, 573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.