Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001315

Physical Location & Seq

Genomic Coordinates Reverse (-)

16289438 .. 16291399

Gene Structure 1962 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g24880.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGCTTGTGTTTTTCAATTGGGTGATTCAGAAACCGAATGTGGCTAAAGATGCTCATATGTATCATGTAATCATCAAAGCATTGGATAGGAGAAAGTTCTTCAAGTACATAATGCAAGTTTTGAGTGACATGAGAAGCCAAGATGTATGTATCAATTTGGAGACTGTGTTGATAGTGATGGATAGTTTTGTGATGGCTGGACATGTATCGAAAGCAATCCGATTTTTTTGGGACTTGGAAGAGTTTGGGTTGGATTGCGGTACTGAGTGTCTGAATGTGCTTCTGCAGTGTCTGTGTCGGCGGTCTCATGTAGTGGCTGCAAGCTTGTTTCTTAATTCAGTGAAGGGGAAGGTGGAGTTTAATGGTGCGACGTATAACGTAGTTTTTGGTGGGTGGTCGAGATATGGTAGAGTTGGTGAGATGGAGAGTACTTTGGAAGCAATGGTAGCAGATGGGTTTAGTCCTGATTGTGCAACTTTCTGTCACATTCTTGAGGGTTTAGGAAGGGCTGATCAGATTGATGATGCGGTTGAGATTTTTGAGAGCATGAAGAGGAAAGGTTGTTACTTCAAGAGTATGTCGAGAAATGGTTGTGATCCAAATGTTGATACTTATACCAAAGTGATTGCTGGTTTTCTTAAAGCCCGAAAATTGGCAGATATACTGGAGATGTTTGATGAGATGTTAAGTCGAGGATTTAAAGCAAGAAAGGTCGGATGTAGAGTATCATTGGCTGCTTATAAGCTATTGCTTATGCGCCTTTCTAGATTTGGTAAATGTGGAATGTTGCTAAACATTTGGGATGAGATGCAGGAATGTGGTTATGTTTCTGATATTGAAGTTTATGAGCACATAATCAGTGGACTTTGCAACATAGGGCAGCTTGAAAATGCTGTAGTTGTCATGGAAGAGTCTCTACGAAAAGGTTTTTGCCCAAGCAGGCTTACTTACAGCAAACTAAGTAACAAACTTCTTGCTTCAAATAAGTTAGAGAGGGCTTACAAGTTATATTTGAAGATTAAAGCTGCTCGTCATGCTGACAACAAGTTATGGACTTACCCTTTAGAAGAGTGGTTTTCAGACATTGTATCAGAGACTGGCTTGACAATGGAGCTGTCCTCTCACTCCTCTGATCAGTTGGATGAAGGGTATTACTTACTAGGTGTTACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

391

Amino Acids

44.37

Weight (kDa)

6.71

Isoelectric Point (pI)

34.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	145 - 188	9.9e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	151 - 184	1e-05	PPR repeat
PPR_2	PF13041	200 - 234	6.4e-06	PPR repeat family
PPR_2	PF13041	278 - 323	6.9e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43820
fragaria_vesca	FvH4_5g24880 FvH4_5g25350 FvH4_5g25520
malus_domestica	MD16G1284000.v1.1
prunus_persica	Prupe.5G009500_v2.0.a1
pyrus_communis	pycom16g26010
rosa_chinensis	RchiOBHm_Chr6g0271861 RchiOBHm_Chr6g0271871 RchiOBHm_Chr6g0271981 RchiOBHm_Chr7g0215761 RchiOBHm_Chr7g0215771 RchiOBHm_Chr7g0215901 RchiOBHm_Chr7g0217231 RchiOBHm_Chr7g0219831
rosa_laevigata	RLG00000002611 RLG00000002625 RLG00000013566
rosa_multiflora	Rmu_sc0000055.1_g000008 Rmu_sc0000055.1_g000009 Rmu_sc0000516.1_g000005 Rmu_sc0000516.1_g000006 Rmu_sc0004379.1_g000016 Rmu_sc0006240.1_g000009 Rmu_sc0007857.1_g000006 Rmu_sc0016364.1_g000002 Rmu_sc0016407.1_g000001 Rmu_sc0023052.1_g000001
rosa_roxburghii	Rroxscaffold_2G00114980 Rroxscaffold_3G00243850 Rroxscaffold_5G00342010 Rroxscaffold_7G00186190
rosa_rugosa	Rorug06G0064100 Rorug07G0156600 Rorug07G0157900 Rorug07G0158000
rosa_samantha	Rh1BG116200 Rh6AG181800 Rh6BG185400 Rh6CG182900 Rh6CG183200 Rh6DG174300 Rh6DG174600 Rh7AG294600 Rh7AG306400 Rh7AG306500 Rh7BG286400 Rh7CG314600 Rh7CG325500 Rh7DG296900 Rh7DG299400 Rh7DG306200
rosa_wichuraiana	Rw6G015640 Rw7G026030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	741
AciI	CCGC	3 cut(s)	258, 301, 527
AclWI	GGATC	1 cut(s)	590
AfaI	GTAC	3 cut(s)	107, 262, 430
AfiI	CCNNNNNNNGG	1 cut(s)	652
AflIII	ACRYGT	1 cut(s)	202
AgsI	TTSAA	7 cut(s)	16, 103, 571, 839, 887, 981, 1015
AluBI	AGCT	5 cut(s)	324, 745, 883, 1025, 1114
AluI	AGCT	5 cut(s)	324, 745, 883, 1025, 1114
Alw21I	GWGCWC	1 cut(s)	852
Alw26I	GTCTC	4 cut(s)	155, 309, 918, 1088
AlwI	GGATC	1 cut(s)	590
AlwNI	CAGNNNCTG	2 cut(s)	292, 1097
ApeKI	GCWGC	4 cut(s)	317, 734, 880, 1025
AspLEI	GCGC	1 cut(s)	759
AsuHPI	GGTGA	2 cut(s)	34, 428
BarI	GAAGNNNNNNTAC	2 cut(s)	900, 932
Bbv12I	GWGCWC	1 cut(s)	852
BbvI	GCAGC	4 cut(s)	304, 721, 892, 1012
BccI	CCATC	4 cut(s)	172, 187, 415, 446
BclI	TGATCA	2 cut(s)	511, 1132
BcoDI	GTCTC	4 cut(s)	155, 309, 918, 1088
BfaI	CTAG	2 cut(s)	765, 1160
BfmI	CTRYAG	2 cut(s)	284, 894
BisI	GCNGC	4 cut(s)	318, 735, 881, 1026
BlsI	GCNGC	4 cut(s)	319, 736, 882, 1027
BmcAI	AGTACT	1 cut(s)	430
BmsI	GCATC	3 cut(s)	40, 514, 798
BplI	GAGNNNNNCTC	2 cut(s)	1103, 1135
BpmI	CTGGAG	1 cut(s)	686
BpuEI	CTTGAG	1 cut(s)	512
BsaI	GGTCTC	1 cut(s)	309
BsaXI	ACNNNNNCTCC	2 cut(s)	152, 182
Bsc4I	CCNNNNNNNGG	1 cut(s)	652
Bse1I	ACTGG	2 cut(s)	669, 1102
Bse3DI	GCAATG	1 cut(s)	447
BseGI	GGATG	3 cut(s)	722, 808, 1147
BseLI	CCNNNNNNNGG	1 cut(s)	652
BseMI	GCAATG	1 cut(s)	447
BseMII	CTCAG	1 cut(s)	255
BseNI	ACTGG	2 cut(s)	669, 1102
BseRI	GAGGAG	1 cut(s)	1117
BseXI	GCAGC	4 cut(s)	304, 721, 892, 1012
BsiHKAI	GWGCWC	1 cut(s)	852
BslFI	GGGAC	1 cut(s)	245
BslI	CCNNNNNNNGG	1 cut(s)	652
BsmAI	GTCTC	4 cut(s)	155, 309, 918, 1088
BsmFI	GGGAC	1 cut(s)	245
Bso31I	GGTCTC	1 cut(s)	309
Bsp1286I	GDGCHC	1 cut(s)	852
Bsp143I	GATC	3 cut(s)	511, 595, 1132
BspACI	CCGC	3 cut(s)	258, 301, 527
BspCNI	CTCAG	1 cut(s)	256
BspMAI	CTGCAG	1 cut(s)	288
BspPI	GGATC	1 cut(s)	590
BspTNI	GGTCTC	1 cut(s)	309
BsrDI	GCAATG	1 cut(s)	447
BsrI	ACTGG	2 cut(s)	669, 1102
BssMI	GATC	3 cut(s)	511, 595, 1132
Bst4CI	ACNGT	1 cut(s)	166
Bst6I	CTCTTC	4 cut(s)	234, 545, 903, 1062
BstC8I	GCNNGC	2 cut(s)	322, 941
BstDEI	CTNAG	2 cut(s)	264, 959
BstF5I	GGATG	3 cut(s)	722, 808, 1147
BstHHI	GCGC	1 cut(s)	759
BstKTI	GATC	3 cut(s)	514, 598, 1135
BstMAI	GTCTC	4 cut(s)	155, 309, 918, 1088
BstMBI	GATC	3 cut(s)	511, 595, 1132
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 446, 1034
BstNSI	RCATGY	1 cut(s)	206
BstSFI	CTRYAG	2 cut(s)	284, 894
BstV1I	GCAGC	4 cut(s)	304, 721, 892, 1012
BtsCI	GGATG	3 cut(s)	722, 808, 1147
BtsI	GCAGTG	1 cut(s)	293
BtsIMutI	CAGTG	3 cut(s)	293, 345, 865
Cac8I	GCNNGC	2 cut(s)	322, 941
CaiI	CAGNNNCTG	2 cut(s)	292, 1097
CfoI	GCGC	1 cut(s)	759
Csp6I	GTAC	3 cut(s)	106, 261, 429
CviAII	CATG	7 cut(s)	65, 130, 203, 308, 547, 904, 1034
CviQI	GTAC	3 cut(s)	106, 261, 429
DdeI	CTNAG	2 cut(s)	264, 959
DpnI	GATC	3 cut(s)	513, 597, 1134
DpnII	GATC	3 cut(s)	511, 595, 1132
DraI	TTTAAA	1 cut(s)	700
Eam1104I	CTCTTC	4 cut(s)	234, 545, 903, 1062
EarI	CTCTTC	4 cut(s)	234, 545, 903, 1062
Eco31I	GGTCTC	1 cut(s)	309
FaeI	CATG	7 cut(s)	68, 133, 206, 311, 550, 907, 1037
FaqI	GGGAC	1 cut(s)	245
FatI	CATG	7 cut(s)	64, 129, 202, 307, 546, 903, 1033
FauNDI	CATATG	1 cut(s)	57
FbaI	TGATCA	2 cut(s)	511, 1132
Fnu4HI	GCNGC	4 cut(s)	318, 735, 881, 1026
FokI	GGATG	3 cut(s)	729, 815, 1154
Fsp4HI	GCNGC	4 cut(s)	318, 735, 881, 1026
FspBI	CTAG	2 cut(s)	765, 1160
GlaI	GCGC	1 cut(s)	758
GluI	GCNGC	4 cut(s)	318, 735, 881, 1026
GsuI	CTGGAG	1 cut(s)	686
HhaI	GCGC	1 cut(s)	759
Hin1II	CATG	7 cut(s)	68, 133, 206, 311, 550, 907, 1037
Hin6I	GCGC	1 cut(s)	757
HinP1I	GCGC	1 cut(s)	757
HindIII	AAGCTT	1 cut(s)	322
HinfI	GANTC	2 cut(s)	25, 911
HphI	GGTGA	2 cut(s)	34, 428
Hpy166II	GTNNAC	1 cut(s)	863
Hpy188I	TCNGA	9 cut(s)	30, 221, 273, 516, 716, 832, 1081, 1093, 1132
Hpy188III	TCNNGA	6 cut(s)	399, 464, 491, 571, 582, 765
Hpy8I	GTNNAC	1 cut(s)	863
Hpy99I	CGWCG	1 cut(s)	373
HpyAV	CCTTC	4 cut(s)	337, 343, 498, 1139
HpyCH4III	ACNGT	1 cut(s)	166
HpyCH4IV	ACGT	2 cut(s)	371, 378
HpyCH4V	TGCA	6 cut(s)	115, 286, 320, 473, 811, 870
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 446, 1034
HpyF3I	CTNAG	2 cut(s)	264, 959
HpySE526I	ACGT	2 cut(s)	371, 378
Hsp92II	CATG	7 cut(s)	68, 133, 206, 311, 550, 907, 1037
HspAI	GCGC	1 cut(s)	757
Ksp22I	TGATCA	2 cut(s)	511, 1132
Kzo9I	GATC	3 cut(s)	511, 595, 1132
LmnI	GCTCC	1 cut(s)	1111
LpnPI	CCDG	7 cut(s)	183, 477, 615, 650, 797, 925, 1083
Lsp1109I	GCAGC	4 cut(s)	304, 721, 892, 1012
LweI	GCATC	3 cut(s)	40, 514, 798
MaeI	CTAG	2 cut(s)	765, 1160
MaeII	ACGT	2 cut(s)	371, 378
MaeIII	GTNAC	5 cut(s)	125, 482, 563, 962, 1165
MalI	GATC	3 cut(s)	513, 597, 1134
MboI	GATC	3 cut(s)	511, 595, 1132
MboII	GAAGA	6 cut(s)	91, 251, 562, 920, 1027, 1079
MfeI	CAATTG	1 cut(s)	16
MhlI	GDGCHC	1 cut(s)	852
MluCI	AATT	4 cut(s)	16, 154, 334, 650
MlyI	GAGTC	1 cut(s)	920
MmeI	TCCRAC	3 cut(s)	231, 694, 1119
MnlI	CCTC	6 cut(s)	487, 546, 686, 987, 1129, 1138
MseI	TTAA	6 cut(s)	333, 360, 639, 686, 699, 1020
MunI	CAATTG	1 cut(s)	16
MwoI	GCNNNNNNNGC	3 cut(s)	50, 446, 1034
NdeI	CATATG	1 cut(s)	57
NdeII	GATC	3 cut(s)	511, 595, 1132
NlaIII	CATG	7 cut(s)	68, 133, 206, 311, 550, 907, 1037
NmuCI	GTSAC	2 cut(s)	125, 482
NspI	RCATGY	1 cut(s)	206
PciI	ACATGT	1 cut(s)	202
PfeI	GAWTC	1 cut(s)	25
PkrI	GCNGC	4 cut(s)	319, 736, 882, 1027
PleI	GAGTC	1 cut(s)	919
PpsI	GAGTC	1 cut(s)	919
PscI	ACATGT	1 cut(s)	202
PsiI	TTATAA	1 cut(s)	741
PstI	CTGCAG	1 cut(s)	288
PstNI	CAGNNNCTG	2 cut(s)	292, 1097
RsaI	GTAC	3 cut(s)	107, 262, 430
RsaNI	GTAC	3 cut(s)	106, 261, 429
SaqAI	TTAA	6 cut(s)	333, 360, 639, 686, 699, 1020
SatI	GCNGC	4 cut(s)	318, 735, 881, 1026
Sau3AI	GATC	3 cut(s)	511, 595, 1132
ScaI	AGTACT	1 cut(s)	430
SchI	GAGTC	1 cut(s)	920
SduI	GDGCHC	1 cut(s)	852
SfaNI	GCATC	3 cut(s)	40, 514, 798
SfcI	CTRYAG	2 cut(s)	284, 894
SmlI	CTYRAG	1 cut(s)	491
SmoI	CTYRAG	1 cut(s)	491
Sse9I	AATT	4 cut(s)	16, 154, 334, 650
SsiI	CCGC	3 cut(s)	258, 301, 527
SspMI	CTAG	2 cut(s)	765, 1160
TaaI	ACNGT	1 cut(s)	166
TaiI	ACGT	2 cut(s)	374, 381
TaqI	TCGA	4 cut(s)	209, 398, 581, 691
TasI	AATT	4 cut(s)	16, 154, 334, 650
TatI	WGTACW	2 cut(s)	105, 428
TfiI	GAWTC	1 cut(s)	25
Tru1I	TTAA	6 cut(s)	333, 360, 639, 686, 699, 1020
Tru9I	TTAA	6 cut(s)	333, 360, 639, 686, 699, 1020
TscAI	CASTG	3 cut(s)	293, 345, 865
TseFI	GTSAC	2 cut(s)	125, 482
TseI	GCWGC	4 cut(s)	317, 734, 880, 1025
Tsp45I	GTSAC	2 cut(s)	125, 482
TspDTI	ATGAA	2 cut(s)	563, 1158
TspRI	CASTG	3 cut(s)	293, 345, 865
XbaI	TCTAGA	1 cut(s)	764
XceI	RCATGY	1 cut(s)	206
XspI	CTAG	2 cut(s)	765, 1160
ZrmI	AGTACT	1 cut(s)	430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.