Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004379.1

Orthogroup ID

OG0001315

Physical Location & Seq

Genomic Coordinates Reverse (-)

75055 .. 77765

Gene Structure 2711 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004379.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1575 bp

atggcgtttcacggcgcttcatgccgtgtcctatcatcgctgccatctctcagcagcagagctaggtactacccaatgcttcaccttcattcaccaatttcttcgtctctcttttcaactcttaatgctcaatcccaacatgaatatgtcaaattcaatcccaaccagtcttcttctcatgacgaaccttctgttcttcaccagctctctgttctgttaccaatcccccatcaaattttacctccaaaacaatttgaccccactgatttgaataagaaggtagaatctgttagggctgtggatgggtttttaatgcccgacgagaaattacgtggggtttttcttcagaaattgaagggtatagctgtaattgagcatgcactcgacaatgttggtgtggatttgagcgttgatgttgttgcacaagtagtgaatagaggttgtttaggcggtgaagcaatgcttgtgttttttaattgggcgattaagaagccaaatgtagctaagcatgttcatacataccatataatcctcaaagcattgggtagaagaaagttctttaattatatgatgcaagttttgaatgacatgaggagccaagacatacgtctcgatttagagactgtgtcgattgtgatggatagttttgtgagggctggacatgtctcgaaagcaatccaagtgttccgaaactcagcagagttcgggttggattgcgatactgagtgtctgaatgtgcttctgcagtgtttgtgtcagcgagttggtgagatggagaggactttggaagcaatggtagcagatgggtttagtcctgatagtgcaactttcagttacattcttgagggtctaggaagagctgatcggattgacgatgcagttgagatttttgagagcatgaaggggaaaggttgcgtgccagacaccattacatacaatgcaatgatctctaacttcatctctgttgcgaatattgatgaatgtgtaaactacttcaagagtatgtcgagtaatgcttgcgatccaaatgttgatacttataccaaattgattgctggtttccttaaagcccggaaagcggcggatgcactggagatgtttgatgagatgttaagtcgaggatttgttcctactacggggactataacctcttttatggaacccctatgtagctatggtccaccatatgctgctatgatgatttaccagaaagcaagaaaggtcggatgtagaatatcattgactgcttataagctattgcttatgcgcctttctagatttggtaaatgtggaatgttgctaaacatttgggaagagatgcaggaatgtggatatgcttctgatatcgaagtttatgagtatgtaatcagtggactttgcaacattgggcagctagaaaatgctcaagttgttgacttacccgctagaagagtcgttgttctagacatttcatcagagattggtttgataatagaggtgtcatcttattgggaaaggctggggaagaatatgattacagtagcagaggagaaagctattcctcttactggcccagtaaaacaattacaagagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

524

Amino Acids

58.44

Weight (kDa)

5.9

Isoelectric Point (pI)

40.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43820
fragaria_vesca	FvH4_5g24880 FvH4_5g25350 FvH4_5g25520
malus_domestica	MD16G1284000.v1.1
prunus_persica	Prupe.5G009500_v2.0.a1
pyrus_communis	pycom16g26010
rosa_chinensis	RchiOBHm_Chr6g0271861 RchiOBHm_Chr6g0271871 RchiOBHm_Chr6g0271981 RchiOBHm_Chr7g0215761 RchiOBHm_Chr7g0215771 RchiOBHm_Chr7g0215901 RchiOBHm_Chr7g0217231 RchiOBHm_Chr7g0219831
rosa_laevigata	RLG00000002611 RLG00000002625 RLG00000013566
rosa_multiflora	Rmu_sc0000055.1_g000008 Rmu_sc0000055.1_g000009 Rmu_sc0000516.1_g000005 Rmu_sc0000516.1_g000006 Rmu_sc0004379.1_g000016 Rmu_sc0006240.1_g000009 Rmu_sc0007857.1_g000006 Rmu_sc0016364.1_g000002 Rmu_sc0016407.1_g000001 Rmu_sc0023052.1_g000001
rosa_roxburghii	Rroxscaffold_2G00114980 Rroxscaffold_3G00243850 Rroxscaffold_5G00342010 Rroxscaffold_7G00186190
rosa_rugosa	Rorug06G0064100 Rorug07G0156600 Rorug07G0157900 Rorug07G0158000
rosa_samantha	Rh1BG116200 Rh6AG181800 Rh6BG185400 Rh6CG182900 Rh6CG183200 Rh6DG174300 Rh6DG174600 Rh7AG294600 Rh7AG306400 Rh7AG306500 Rh7BG286400 Rh7CG314600 Rh7CG325500 Rh7DG296900 Rh7DG299400 Rh7DG306200
rosa_wichuraiana	Rw6G015640 Rw7G026030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1251
AciI	CCGC	4 cut(s)	450, 1079, 1082, 1422
AclWI	GGATC	1 cut(s)	1016
AcsI	RAATTY	2 cut(s)	152, 234
AcuI	CTGAAG	1 cut(s)	329
AfaI	GTAC	1 cut(s)	68
AfiI	CCNNNNNNNGG	3 cut(s)	1078, 1136, 1547
AflIII	ACRYGT	1 cut(s)	661
AgsI	TTSAA	6 cut(s)	117, 157, 271, 355, 583, 997
AluBI	AGCT	9 cut(s)	62, 205, 365, 503, 860, 1173, 1255, 1393, 1535
AluI	AGCT	9 cut(s)	62, 205, 365, 503, 860, 1173, 1255, 1393, 1535
Alw26I	GTCTC	4 cut(s)	111, 614, 614, 670
AlwI	GGATC	1 cut(s)	1016
AoxI	GGCC	1 cut(s)	1549
ApeKI	GCWGC	4 cut(s)	40, 54, 1190, 1390
ApoI	RAATTY	2 cut(s)	152, 234
AspLEI	GCGC	2 cut(s)	17, 1269
AspS9I	GGNCC	2 cut(s)	1178, 1550
AsuC2I	CCSGG	1 cut(s)	1072
AsuHPI	GGTGA	5 cut(s)	74, 84, 191, 464, 779
AvaII	GGWCC	1 cut(s)	1178
BbsI	GAAGAC	1 cut(s)	162
BbvI	GCAGC	4 cut(s)	27, 66, 1177, 1402
BccI	CCATC	6 cut(s)	52, 237, 296, 631, 766, 797
BceAI	ACGGC	2 cut(s)	9, 28
BcnI	CCSGG	1 cut(s)	1072
BcoDI	GTCTC	4 cut(s)	111, 614, 614, 670
BfaI	CTAG	6 cut(s)	63, 851, 1275, 1394, 1425, 1442
BfmI	CTRYAG	1 cut(s)	743
BfoI	RGCGCY	1 cut(s)	18
BisI	GCNGC	5 cut(s)	41, 55, 1080, 1191, 1391
BlpI	GCTNAGC	1 cut(s)	504
BlsI	GCNGC	5 cut(s)	42, 56, 1081, 1192, 1392
Bme1390I	CCNGG	1 cut(s)	1072
Bme18I	GGWCC	1 cut(s)	1178
BmgT120I	GGNCC	2 cut(s)	1178, 1550
BmiI	GGNNCC	2 cut(s)	596, 1161
BmrFI	CCNGG	1 cut(s)	1072
BmrI	ACTGGG	1 cut(s)	1547
BmsI	GCATC	4 cut(s)	561, 865, 1075, 1308
BmuI	ACTGGG	1 cut(s)	1547
BoxI	GACNNNNGTC	1 cut(s)	606
BpiI	GAAGAC	1 cut(s)	162
BpmI	CTGGAG	1 cut(s)	1112
Bpu1102I	GCTNAGC	1 cut(s)	504
BpuEI	CTTGAG	2 cut(s)	863, 1389
BpuMI	CCSGG	1 cut(s)	1072
BsaAI	YACGTR	1 cut(s)	332
Bsc4I	CCNNNNNNNGG	3 cut(s)	1078, 1136, 1547
Bse1I	ACTGG	4 cut(s)	166, 1095, 1552, 1553
Bse3DI	GCAATG	3 cut(s)	465, 798, 948
BseGI	GGATG	3 cut(s)	307, 1090, 1232
BseLI	CCNNNNNNNGG	3 cut(s)	1078, 1136, 1547
BseMI	GCAATG	3 cut(s)	465, 798, 948
BseMII	CTCAG	3 cut(s)	64, 708, 714
BseNI	ACTGG	4 cut(s)	166, 1095, 1552, 1553
BseRI	GAGGAG	2 cut(s)	607, 1541
BseXI	GCAGC	4 cut(s)	27, 66, 1177, 1402
BseYI	CCCAGC	1 cut(s)	1498
BshFI	GGCC	1 cut(s)	1551
BsiSI	CCGG	1 cut(s)	1072
BslFI	GGGAC	1 cut(s)	1153
BslI	CCNNNNNNNGG	3 cut(s)	1078, 1136, 1547
BsmAI	GTCTC	4 cut(s)	111, 614, 614, 670
BsmBI	CGTCTC	2 cut(s)	111, 614
BsmFI	GGGAC	1 cut(s)	1153
BsnI	GGCC	1 cut(s)	1551
Bsp143I	GATC	3 cut(s)	862, 945, 1021
Bsp1720I	GCTNAGC	1 cut(s)	504
BspACI	CCGC	4 cut(s)	450, 1079, 1082, 1422
BspANI	GGCC	1 cut(s)	1551
BspCNI	CTCAG	3 cut(s)	63, 707, 715
BspHI	TCATGA	1 cut(s)	178
BspLI	GGNNCC	2 cut(s)	596, 1161
BspMAI	CTGCAG	1 cut(s)	747
BspPI	GGATC	1 cut(s)	1016
BspQI	GCTCTTC	1 cut(s)	850
BsrDI	GCAATG	3 cut(s)	465, 798, 948
BsrI	ACTGG	4 cut(s)	166, 1095, 1552, 1553
BssMI	GATC	3 cut(s)	862, 945, 1021
Bst4CI	ACNGT	2 cut(s)	625, 1519
Bst6I	CTCTTC	3 cut(s)	850, 1308, 1423
BstBAI	YACGTR	1 cut(s)	332
BstC8I	GCNNGC	3 cut(s)	378, 917, 1018
BstDEI	CTNAG	4 cut(s)	50, 504, 694, 723
BstF5I	GGATG	3 cut(s)	307, 1090, 1232
BstH2I	RGCGCY	1 cut(s)	18
BstHHI	GCGC	2 cut(s)	17, 1269
BstKTI	GATC	3 cut(s)	865, 948, 1024
BstMAI	GTCTC	4 cut(s)	111, 614, 614, 670
BstMBI	GATC	3 cut(s)	862, 945, 1021
BstMWI	GCNNNNNNNGC	4 cut(s)	21, 797, 1076, 1085
BstNSI	RCATGY	3 cut(s)	380, 512, 665
BstPAI	GACNNNNGTC	1 cut(s)	606
BstSCI	CCNGG	1 cut(s)	1070
BstSFI	CTRYAG	1 cut(s)	743
BstV1I	GCAGC	4 cut(s)	27, 66, 1177, 1402
BstV2I	GAAGAC	1 cut(s)	162
BsuRI	GGCC	1 cut(s)	1551
BtgZI	GCGATG	1 cut(s)	21
BtsCI	GGATG	3 cut(s)	307, 1090, 1232
BtsI	GCAGTG	1 cut(s)	752
BtsIMutI	CAGTG	4 cut(s)	261, 752, 1088, 1375
Cac8I	GCNNGC	3 cut(s)	378, 917, 1018
CciI	TCATGA	1 cut(s)	178
CfoI	GCGC	2 cut(s)	17, 1269
Cfr13I	GGNCC	2 cut(s)	1178, 1550
Csp6I	GTAC	1 cut(s)	67
CviAII	CATG	8 cut(s)	21, 140, 179, 377, 509, 589, 662, 898
CviQI	GTAC	1 cut(s)	67
DdeI	CTNAG	4 cut(s)	50, 504, 694, 723
DpnI	GATC	3 cut(s)	864, 947, 1023
DpnII	GATC	3 cut(s)	862, 945, 1021
Eam1104I	CTCTTC	3 cut(s)	850, 1308, 1423
EarI	CTCTTC	3 cut(s)	850, 1308, 1423
EciI	GGCGGA	1 cut(s)	1097
Eco32I	GATATC	1 cut(s)	1345
Eco47I	GGWCC	1 cut(s)	1178
Eco57I	CTGAAG	1 cut(s)	329
EcoRV	GATATC	1 cut(s)	1345
Esp3I	CGTCTC	2 cut(s)	111, 614
FaeI	CATG	8 cut(s)	24, 143, 182, 380, 512, 592, 665, 901
FalI	AAGNNNNNCTT	2 cut(s)	447, 479
FaqI	GGGAC	1 cut(s)	1153
FatI	CATG	8 cut(s)	20, 139, 178, 376, 508, 588, 661, 897
FauI	CCCGC	1 cut(s)	1429
FauNDI	CATATG	1 cut(s)	1186
Fnu4HI	GCNGC	5 cut(s)	41, 55, 1080, 1191, 1391
FokI	GGATG	3 cut(s)	314, 1097, 1239
Fsp4HI	GCNGC	5 cut(s)	41, 55, 1080, 1191, 1391
FspBI	CTAG	6 cut(s)	63, 851, 1275, 1394, 1425, 1442
GlaI	GCGC	2 cut(s)	16, 1268
GluI	GCNGC	5 cut(s)	41, 55, 1080, 1191, 1391
GsaI	CCCAGC	1 cut(s)	1502
GsuI	CTGGAG	1 cut(s)	1112
HaeII	RGCGCY	1 cut(s)	18
HaeIII	GGCC	1 cut(s)	1551
HapII	CCGG	1 cut(s)	1072
HhaI	GCGC	2 cut(s)	17, 1269
Hin1II	CATG	8 cut(s)	24, 143, 182, 380, 512, 592, 665, 901
Hin6I	GCGC	2 cut(s)	15, 1267
HinP1I	GCGC	2 cut(s)	15, 1267
HincII	GTYRAC	1 cut(s)	1414
HindII	GTYRAC	1 cut(s)	1414
HinfI	GANTC	2 cut(s)	284, 1431
HpaII	CCGG	1 cut(s)	1072
HphI	GGTGA	5 cut(s)	74, 84, 191, 464, 779
Hpy166II	GTNNAC	4 cut(s)	988, 1181, 1373, 1414
Hpy188I	TCNGA	7 cut(s)	348, 689, 732, 867, 1226, 1342, 1456
Hpy188III	TCNNGA	8 cut(s)	179, 611, 667, 815, 842, 997, 1275, 1442
Hpy8I	GTNNAC	4 cut(s)	988, 1181, 1373, 1414
Hpy99I	CGWCG	1 cut(s)	323
HpyAV	CCTTC	5 cut(s)	95, 198, 271, 349, 895
HpyCH4III	ACNGT	2 cut(s)	625, 1519
HpyCH4IV	ACGT	2 cut(s)	331, 607
HpyF10VI	GCNNNNNNNGC	4 cut(s)	21, 797, 1076, 1085
HpyF3I	CTNAG	4 cut(s)	50, 504, 694, 723
HpySE526I	ACGT	2 cut(s)	331, 607
Hsp92II	CATG	8 cut(s)	24, 143, 182, 380, 512, 592, 665, 901
HspAI	GCGC	2 cut(s)	15, 1267
Kzo9I	GATC	3 cut(s)	862, 945, 1021
LguI	GCTCTTC	1 cut(s)	850
LmnI	GCTCC	1 cut(s)	594
Lsp1109I	GCAGC	4 cut(s)	27, 66, 1177, 1402
LweI	GCATC	4 cut(s)	561, 865, 1075, 1308
MaeI	CTAG	6 cut(s)	63, 851, 1275, 1394, 1425, 1442
MaeII	ACGT	2 cut(s)	331, 607
MaeIII	GTNAC	2 cut(s)	216, 833
MalI	GATC	3 cut(s)	864, 947, 1023
MboI	GATC	3 cut(s)	862, 945, 1021
MlyI	GAGTC	1 cut(s)	1440
MmeI	TCCRAC	2 cut(s)	690, 1204
MseI	TTAA	7 cut(s)	123, 311, 474, 486, 561, 1065, 1112
MslI	CAYNNNNRTG	1 cut(s)	144
MspI	CCGG	1 cut(s)	1072
MspR9I	CCNGG	1 cut(s)	1072
MwoI	GCNNNNNNNGC	4 cut(s)	21, 797, 1076, 1085
NciI	CCSGG	1 cut(s)	1072
NdeI	CATATG	1 cut(s)	1186
NdeII	GATC	3 cut(s)	862, 945, 1021
NlaIII	CATG	8 cut(s)	24, 143, 182, 380, 512, 592, 665, 901
NlaIV	GGNNCC	2 cut(s)	596, 1161
NspI	RCATGY	3 cut(s)	380, 512, 665
PaeI	GCATGC	1 cut(s)	380
PagI	TCATGA	1 cut(s)	178
PciI	ACATGT	1 cut(s)	661
PciSI	GCTCTTC	1 cut(s)	850
PfeI	GAWTC	1 cut(s)	284
PflFI	GACNNNGTC	1 cut(s)	625
PkrI	GCNGC	5 cut(s)	42, 56, 1081, 1192, 1392
PleI	GAGTC	1 cut(s)	1439
PpsI	GAGTC	1 cut(s)	1439
Ppu21I	YACGTR	1 cut(s)	332
PscI	ACATGT	1 cut(s)	661
PshAI	GACNNNNGTC	1 cut(s)	606
PsiI	TTATAA	1 cut(s)	1251
PspFI	CCCAGC	1 cut(s)	1498
PspN4I	GGNNCC	2 cut(s)	596, 1161
PspPI	GGNCC	2 cut(s)	1178, 1550
PstI	CTGCAG	1 cut(s)	747
PsyI	GACNNNGTC	1 cut(s)	625
RsaI	GTAC	1 cut(s)	68
RsaNI	GTAC	1 cut(s)	67
RseI	CAYNNNNRTG	1 cut(s)	144
SapI	GCTCTTC	1 cut(s)	850
SaqAI	TTAA	7 cut(s)	123, 311, 474, 486, 561, 1065, 1112
SatI	GCNGC	5 cut(s)	41, 55, 1080, 1191, 1391
Sau3AI	GATC	3 cut(s)	862, 945, 1021
Sau96I	GGNCC	2 cut(s)	1178, 1550
SchI	GAGTC	1 cut(s)	1440
ScrFI	CCNGG	1 cut(s)	1072
SfaNI	GCATC	4 cut(s)	561, 865, 1075, 1308
SfcI	CTRYAG	1 cut(s)	743
SinI	GGWCC	1 cut(s)	1178
SmiMI	CAYNNNNRTG	1 cut(s)	144
SmlI	CTYRAG	2 cut(s)	842, 1404
SmoI	CTYRAG	2 cut(s)	842, 1404
SphI	GCATGC	1 cut(s)	380
SsiI	CCGC	4 cut(s)	450, 1079, 1082, 1422
SspI	AATATT	1 cut(s)	973
SspMI	CTAG	6 cut(s)	63, 851, 1275, 1394, 1425, 1442
StyD4I	CCNGG	1 cut(s)	1070
TaaI	ACNGT	2 cut(s)	625, 1519
TaiI	ACGT	2 cut(s)	334, 610
TaqI	TCGA	7 cut(s)	384, 612, 629, 668, 1007, 1117, 1347
TauI	GCSGC	1 cut(s)	1082
TfiI	GAWTC	1 cut(s)	284
Tru1I	TTAA	7 cut(s)	123, 311, 474, 486, 561, 1065, 1112
Tru9I	TTAA	7 cut(s)	123, 311, 474, 486, 561, 1065, 1112
TscAI	CASTG	4 cut(s)	268, 752, 1095, 1375
TseI	GCWGC	4 cut(s)	40, 54, 1190, 1390
TspDTI	ATGAA	8 cut(s)	9, 77, 156, 503, 914, 946, 993, 1440
TspRI	CASTG	4 cut(s)	268, 752, 1095, 1375
Tth111I	GACNNNGTC	1 cut(s)	625
VpaK11BI	GGWCC	1 cut(s)	1178
XapI	RAATTY	2 cut(s)	152, 234
XbaI	TCTAGA	2 cut(s)	1274, 1441
XceI	RCATGY	3 cut(s)	380, 512, 665
XspI	CTAG	6 cut(s)	63, 851, 1275, 1394, 1425, 1442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.