Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001315

Physical Location & Seq

Genomic Coordinates Forward (+)

31898012 .. 31898520

Gene Structure 509 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24387

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGAACCCCTATGTAGCTATGGTCCACCATATGCTGCTATGATGATCTACCAGAAAGCAAGAAAGGTCGGATGTAGAATATCATTGACTGCTTATAAGCTATTGCTTATGCGCCTTTCTAGATTTGGTAAATGTGGAATGTTGCTAAACATTTGGGAAGAGATGCAGGAATGTGGATATGCTTCTGATATCGAAGTTTATGAGTATGTAATCAGTGGACTTTGCAACATTGGGCAGCTTGAAAATGCTGTACTTGTCATGGAAGAGTCTCTACGAAAAGGTTTTTGCCCAAGCAGGCTTACCTATAGCAAACTAAGTAACAAACTTCTTGCTTCAAATAAGTTAGAGAGGGCTTATAAGCTATACTTGAAGATTAAAGCTGCTCGTCGTTTTGACAAGACACAGAGAATTTGGCGTGCTAGGGGATGGCATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

145

Amino Acids

16.9

Weight (kDa)

9.59

Isoelectric Point (pI)

39.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43820
fragaria_vesca	FvH4_5g24880 FvH4_5g25350 FvH4_5g25520
malus_domestica	MD16G1284000.v1.1
prunus_persica	Prupe.5G009500_v2.0.a1
pyrus_communis	pycom16g26010
rosa_chinensis	RchiOBHm_Chr6g0271861 RchiOBHm_Chr6g0271871 RchiOBHm_Chr6g0271981 RchiOBHm_Chr7g0215761 RchiOBHm_Chr7g0215771 RchiOBHm_Chr7g0215901 RchiOBHm_Chr7g0217231 RchiOBHm_Chr7g0219831
rosa_laevigata	RLG00000002611 RLG00000002625 RLG00000013566
rosa_multiflora	Rmu_sc0000055.1_g000008 Rmu_sc0000055.1_g000009 Rmu_sc0000516.1_g000005 Rmu_sc0000516.1_g000006 Rmu_sc0004379.1_g000016 Rmu_sc0006240.1_g000009 Rmu_sc0007857.1_g000006 Rmu_sc0016364.1_g000002 Rmu_sc0016407.1_g000001 Rmu_sc0023052.1_g000001
rosa_roxburghii	Rroxscaffold_2G00114980 Rroxscaffold_3G00243850 Rroxscaffold_5G00342010 Rroxscaffold_7G00186190
rosa_rugosa	Rorug06G0064100 Rorug07G0156600 Rorug07G0157900 Rorug07G0158000
rosa_samantha	Rh1BG116200 Rh6AG181800 Rh6BG185400 Rh6CG182900 Rh6CG183200 Rh6DG174300 Rh6DG174600 Rh7AG294600 Rh7AG306400 Rh7AG306500 Rh7BG286400 Rh7CG314600 Rh7CG325500 Rh7DG296900 Rh7DG299400 Rh7DG306200
rosa_wichuraiana	Rw6G015640 Rw7G026030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	96, 357
AcsI	RAATTY	1 cut(s)	408
AfaI	GTAC	1 cut(s)	252
AgsI	TTSAA	3 cut(s)	242, 336, 370
AluBI	AGCT	5 cut(s)	18, 100, 238, 361, 380
AluI	AGCT	5 cut(s)	18, 100, 238, 361, 380
Alw26I	GTCTC	1 cut(s)	273
ApeKI	GCWGC	3 cut(s)	35, 235, 380
ApoI	RAATTY	1 cut(s)	408
AspLEI	GCGC	1 cut(s)	114
AspS9I	GGNCC	1 cut(s)	23
AvaII	GGWCC	1 cut(s)	23
BarI	GAAGNNNNNNTAC	2 cut(s)	255, 287
BbvI	GCAGC	3 cut(s)	22, 247, 367
BccI	CCATC	1 cut(s)	420
BcoDI	GTCTC	1 cut(s)	273
BfaI	CTAG	2 cut(s)	120, 420
BfmI	CTRYAG	1 cut(s)	304
BisI	GCNGC	3 cut(s)	36, 236, 381
BlsI	GCNGC	3 cut(s)	37, 237, 382
Bme18I	GGWCC	1 cut(s)	23
BmgT120I	GGNCC	1 cut(s)	23
BmiI	GGNNCC	1 cut(s)	6
BmsI	GCATC	1 cut(s)	153
BseGI	GGATG	2 cut(s)	77, 431
BseXI	GCAGC	3 cut(s)	22, 247, 367
BsmAI	GTCTC	1 cut(s)	273
Bsp143I	GATC	1 cut(s)	45
BspLI	GGNNCC	1 cut(s)	6
BssMI	GATC	1 cut(s)	45
Bst6I	CTCTTC	2 cut(s)	153, 258
BstC8I	GCNNGC	2 cut(s)	296, 417
BstDEI	CTNAG	1 cut(s)	314
BstF5I	GGATG	2 cut(s)	77, 431
BstHHI	GCGC	1 cut(s)	114
BstKTI	GATC	1 cut(s)	48
BstMAI	GTCTC	1 cut(s)	273
BstMBI	GATC	1 cut(s)	45
BstSFI	CTRYAG	1 cut(s)	304
BstV1I	GCAGC	3 cut(s)	22, 247, 367
BtsCI	GGATG	2 cut(s)	77, 431
BtsIMutI	CAGTG	1 cut(s)	220
Cac8I	GCNNGC	2 cut(s)	296, 417
CfoI	GCGC	1 cut(s)	114
Cfr13I	GGNCC	1 cut(s)	23
Csp6I	GTAC	1 cut(s)	251
CviAII	CATG	1 cut(s)	259
CviJI	RGCY	7 cut(s)	18, 100, 238, 298, 353, 361, 380
CviKI_1	RGCY	7 cut(s)	18, 100, 238, 298, 353, 361, 380
CviQI	GTAC	1 cut(s)	251
DdeI	CTNAG	1 cut(s)	314
DpnI	GATC	1 cut(s)	47
DpnII	GATC	1 cut(s)	45
Eam1104I	CTCTTC	2 cut(s)	153, 258
EarI	CTCTTC	2 cut(s)	153, 258
Eco32I	GATATC	1 cut(s)	190
Eco47I	GGWCC	1 cut(s)	23
EcoRV	GATATC	1 cut(s)	190
FaeI	CATG	1 cut(s)	262
FalI	AAGNNNNNCTT	2 cut(s)	350, 382
FatI	CATG	1 cut(s)	258
FauNDI	CATATG	1 cut(s)	31
Fnu4HI	GCNGC	3 cut(s)	36, 236, 381
FokI	GGATG	1 cut(s)	84
Fsp4HI	GCNGC	3 cut(s)	36, 236, 381
FspBI	CTAG	2 cut(s)	120, 420
GlaI	GCGC	1 cut(s)	113
GluI	GCNGC	3 cut(s)	36, 236, 381
HhaI	GCGC	1 cut(s)	114
Hin1II	CATG	1 cut(s)	262
Hin6I	GCGC	1 cut(s)	112
HinP1I	GCGC	1 cut(s)	112
HinfI	GANTC	1 cut(s)	266
Hpy166II	GTNNAC	2 cut(s)	26, 218
Hpy188I	TCNGA	3 cut(s)	71, 187, 437
Hpy188III	TCNNGA	1 cut(s)	120
Hpy8I	GTNNAC	2 cut(s)	26, 218
Hpy99I	CGWCG	1 cut(s)	390
HpyCH4V	TGCA	2 cut(s)	166, 225
HpyF3I	CTNAG	1 cut(s)	314
Hsp92II	CATG	1 cut(s)	262
HspAI	GCGC	1 cut(s)	112
Kzo9I	GATC	1 cut(s)	45
LpnPI	CCDG	3 cut(s)	65, 152, 280
Lsp1109I	GCAGC	3 cut(s)	22, 247, 367
LweI	GCATC	1 cut(s)	153
MaeI	CTAG	2 cut(s)	120, 420
MaeIII	GTNAC	1 cut(s)	317
MalI	GATC	1 cut(s)	47
MboI	GATC	1 cut(s)	45
MboII	GAAGA	3 cut(s)	170, 275, 382
MluCI	AATT	1 cut(s)	408
MlyI	GAGTC	1 cut(s)	275
MmeI	TCCRAC	1 cut(s)	49
MnlI	CCTC	1 cut(s)	342
MseI	TTAA	1 cut(s)	375
NdeI	CATATG	1 cut(s)	31
NdeII	GATC	1 cut(s)	45
NlaIII	CATG	1 cut(s)	262
NlaIV	GGNNCC	1 cut(s)	6
PkrI	GCNGC	3 cut(s)	37, 237, 382
PleI	GAGTC	1 cut(s)	274
PpsI	GAGTC	1 cut(s)	274
PsiI	TTATAA	2 cut(s)	96, 357
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	23
RsaI	GTAC	1 cut(s)	252
RsaNI	GTAC	1 cut(s)	251
SaqAI	TTAA	1 cut(s)	375
SatI	GCNGC	3 cut(s)	36, 236, 381
Sau3AI	GATC	1 cut(s)	45
Sau96I	GGNCC	1 cut(s)	23
SchI	GAGTC	1 cut(s)	275
SetI	ASST	8 cut(s)	20, 69, 102, 240, 283, 305, 363, 382
SfaNI	GCATC	1 cut(s)	153
SfcI	CTRYAG	1 cut(s)	304
SinI	GGWCC	1 cut(s)	23
Sse9I	AATT	1 cut(s)	408
SspMI	CTAG	2 cut(s)	120, 420
TaqI	TCGA	1 cut(s)	192
TasI	AATT	1 cut(s)	408
TatI	WGTACW	1 cut(s)	250
Tru1I	TTAA	1 cut(s)	375
Tru9I	TTAA	1 cut(s)	375
TscAI	CASTG	1 cut(s)	220
TseI	GCWGC	3 cut(s)	35, 235, 380
TspRI	CASTG	1 cut(s)	220
VpaK11BI	GGWCC	1 cut(s)	23
XapI	RAATTY	1 cut(s)	408
XbaI	TCTAGA	1 cut(s)	119
XspI	CTAG	2 cut(s)	120, 420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.