AT5G61120

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0001632
Physical Location & Seq
Reverse (-)
24582225 .. 24585818
3594 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G61120.3

Sequence Viewer

Length: 1281 bp
ATGGCTGCATTGAATCTATCAAAGAGGTCAATTTGTGAAACATGCGGACATCAAGGATGGAAGAATTCACTTGTAACTTGCTCTAAATGCCGCATAGCCTGTGAACACTGTTATTGCATGCGGGAGAGTTCATTTGAGACCTCAATACATTTTGTCTGTGCTGATTGTTCGATGAGACCTGTTCAAAACAAATTTACTTCAGATTCTATCAAAGGAGTCCCTAGAAGTATTAGGAATAAAGTGCGGGTGGAATCTTCAAATCCAGTTCCTAAATGGAAAAAAATTCCTGAAACGTCAAGGATGAAGTTAATTTCACCAGAGGAAGTAAAAAAACTTGCATGTGGAGGCAGTACCAGTAAACCAACTTTTAGAGTACCAAGACCTGTTTCAGCTCGTCCTCCAATGGGTTTAACAAAACCAACTGCTGGCTTTCCAAGAGCTAGGAGTCTAAATTCTACAGTGGTGGCTCGCAAAACCAAATCAATTTACCTTCCACCTAAAAAGGTTGAGCCTCTTAGTCCTCGTACTCAACAGATTCGTCCAGGGGTCATGAGACAAGCTTCTAAAGCACAAGCAGTAGGAGAAGGGTCAAAATCAAAAGTTGGCGATGGAGCTAAATATCATGATTCCAACGAGATATGCCGATCAATTTTATCAGAGAAATTGTTGCAATTACTTCCATATCGACCAGCTTTGCACCCCATTTGGAAGGGACGCATAGTGGATTCTGCTACACCATCTGAGTTTAATGGCGAGTTCTTAGCTCAACCGGCATCTAAAGTCCGAGGGAAGGCTTATATACTTTCAAAAGCTATTCCTGTCTTACTCAAGGTCAAATTGGTTCCTATAGGCAATCTTCTGAGTGGTTTGTTTATGAACAGAAAACCAGGGCTTTCAGATGTCGAGATGTACATTTTCCCAGATGACAAGAACACAAAAAGGTTTACAGCGGAACGTGATCATATCTTTGAGGCCATGAGGATTCGCAATGCCATGATGAAATTTAACATCAATGGCACACCATTGTTGATATTCTCTTCAAAACTACTGGACAAGTCCTCCCAGATTATCATCAAGATGCAGAAGAAAACAAATAACTTCCTTTGGGGGATTTTTCTCCTGACGAAAAAGTCTTTAGCACTTCTTCCAGGAACATCGAATCAAACTCCCCAACATTTTGATGATGGATATGTAGTTGACAATGACACTGAACCTTTCTTCAGACGATACCACCGGAATTGTGGGAAGCAATTGCAGAGACATTATGGTCAGAGGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

426

Amino Acids

47.95

Weight (kDa)

10.06

Isoelectric Point (pI)

42.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPOC_AIPP2 PF23121 229 - 365 2.3e-25 AIPP2, SPOC-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 1129, 1266
AccB7I CCANNNNNTGG 1 cut(s) 425
AciI CCGC 5 cut(s) 45, 91, 121, 244, 950
AcsI RAATTY 5 cut(s) 64, 191, 282, 451, 1001
AcuI CTGAAG 2 cut(s) 183, 1204
AfaI GTAC 4 cut(s) 352, 375, 526, 911
AfiI CCNNNNNNNGG 3 cut(s) 404, 425, 790
AgsI TTSAA 5 cut(s) 13, 185, 258, 807, 1041
AjnI CCWGG 3 cut(s) 541, 886, 1147
AjuI GAANNNNNNNTTGG 2 cut(s) 370, 402
AluBI AGCT 7 cut(s) 392, 440, 560, 614, 692, 764, 812
AluI AGCT 7 cut(s) 392, 440, 560, 614, 692, 764, 812
Alw26I GTCTC 4 cut(s) 131, 169, 547, 1252
AoxI GGCC 1 cut(s) 972
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 5 cut(s) 64, 191, 282, 451, 1001
AsuHPI GGTGA 1 cut(s) 306
BccI CCATC 4 cut(s) 51, 602, 745, 1178
BciT130I CCWGG 3 cut(s) 543, 888, 1149
BclI TGATCA 1 cut(s) 958
BcoDI GTCTC 4 cut(s) 131, 169, 547, 1252
BfaI CTAG 2 cut(s) 222, 441
BfmI CTRYAG 2 cut(s) 456, 846
BisI GCNGC 2 cut(s) 6, 91
BlsI GCNGC 2 cut(s) 7, 92
Bme1390I CCNGG 3 cut(s) 543, 888, 1149
BmiI GGNNCC 1 cut(s) 843
BmrFI CCNGG 3 cut(s) 543, 888, 1149
BmsI GCATC 2 cut(s) 782, 1068
BpuEI CTTGAG 1 cut(s) 812
BsaBI GATNNNNATC 1 cut(s) 1070
BsaI GGTCTC 2 cut(s) 131, 169
BsaJI CCNNGG 3 cut(s) 542, 784, 887
BsaWI WCCGGW 1 cut(s) 1233
BsaXI ACNNNNNCTCC 2 cut(s) 1043, 1073
Bsc4I CCNNNNNNNGG 3 cut(s) 404, 425, 790
Bse118I RCCGGY 1 cut(s) 769
Bse1I ACTGG 3 cut(s) 263, 354, 1053
Bse3DI GCAATG 1 cut(s) 994
Bse8I GATNNNNATC 1 cut(s) 1070
BseBI CCWGG 3 cut(s) 543, 888, 1149
BseDI CCNNGG 3 cut(s) 542, 784, 887
BseGI GGATG 2 cut(s) 62, 306
BseJI GATNNNNATC 1 cut(s) 1070
BseLI CCNNNNNNNGG 3 cut(s) 404, 425, 790
BseMI GCAATG 1 cut(s) 994
BseMII CTCAG 2 cut(s) 732, 851
BseNI ACTGG 3 cut(s) 263, 354, 1053
BshFI GGCC 1 cut(s) 974
BsiSI CCGG 2 cut(s) 770, 1234
BslFI GGGAC 2 cut(s) 203, 726
BslI CCNNNNNNNGG 3 cut(s) 404, 425, 790
BsmAI GTCTC 4 cut(s) 131, 169, 547, 1252
BsmFI GGGAC 2 cut(s) 203, 726
BsnI GGCC 1 cut(s) 974
Bso31I GGTCTC 2 cut(s) 131, 169
Bsp1407I TGTACA 1 cut(s) 909
Bsp143I GATC 2 cut(s) 644, 958
BspACI CCGC 5 cut(s) 45, 91, 121, 244, 950
BspANI GGCC 1 cut(s) 974
BspCNI CTCAG 2 cut(s) 733, 852
BspHI TCATGA 2 cut(s) 549, 622
BspLI GGNNCC 1 cut(s) 843
BspTNI GGTCTC 2 cut(s) 131, 169
BsrDI GCAATG 1 cut(s) 994
BsrFI RCCGGY 1 cut(s) 769
BsrGI TGTACA 1 cut(s) 909
BsrI ACTGG 3 cut(s) 263, 354, 1053
BssAI RCCGGY 1 cut(s) 769
BssECI CCNNGG 3 cut(s) 542, 784, 887
BssMI GATC 2 cut(s) 644, 958
Bst2UI CCWGG 3 cut(s) 543, 888, 1149
Bst4CI ACNGT 2 cut(s) 110, 460
Bst6I CTCTTC 1 cut(s) 1042
BstAUI TGTACA 1 cut(s) 909
BstC8I GCNNGC 3 cut(s) 119, 427, 469
BstDEI CTNAG 4 cut(s) 515, 741, 760, 860
BstF5I GGATG 2 cut(s) 62, 306
BstKTI GATC 2 cut(s) 647, 961
BstMAI GTCTC 4 cut(s) 131, 169, 547, 1252
BstMBI GATC 2 cut(s) 644, 958
BstMWI GCNNNNNNNGC 3 cut(s) 87, 566, 770
BstNI CCWGG 3 cut(s) 543, 888, 1149
BstNSI RCATGY 3 cut(s) 45, 121, 342
BstSCI CCNGG 3 cut(s) 541, 886, 1147
BstSFI CTRYAG 2 cut(s) 456, 846
BsuRI GGCC 1 cut(s) 974
BtgZI GCGATG 1 cut(s) 621
BtsCI GGATG 2 cut(s) 62, 306
BtsIMutI CAGTG 3 cut(s) 106, 465, 1206
Cac8I GCNNGC 3 cut(s) 119, 427, 469
CciI TCATGA 2 cut(s) 549, 622
Cfr10I RCCGGY 1 cut(s) 769
CseI GACGC 1 cut(s) 723
Csp6I GTAC 4 cut(s) 351, 374, 525, 910
CspCI CAANNNNNGTGG 2 cut(s) 1220, 1255
CviAII CATG 7 cut(s) 42, 118, 339, 550, 623, 976, 994
CviQI GTAC 4 cut(s) 351, 374, 525, 910
DdeI CTNAG 4 cut(s) 515, 741, 760, 860
DpnI GATC 2 cut(s) 646, 960
DpnII GATC 2 cut(s) 644, 958
DrdI GACNNNNNNGTC 2 cut(s) 1129, 1266
DseDI GACNNNNNNGTC 2 cut(s) 1129, 1266
Eam1104I CTCTTC 1 cut(s) 1042
EarI CTCTTC 1 cut(s) 1042
Eco31I GGTCTC 2 cut(s) 131, 169
Eco57I CTGAAG 2 cut(s) 183, 1204
EcoRI GAATTC 1 cut(s) 64
EcoRII CCWGG 3 cut(s) 541, 886, 1147
FaeI CATG 7 cut(s) 45, 121, 342, 553, 626, 979, 997
FaqI GGGAC 2 cut(s) 203, 726
FatI CATG 7 cut(s) 41, 117, 338, 549, 622, 975, 993
FauI CCCGC 2 cut(s) 114, 237
FbaI TGATCA 1 cut(s) 958
Fnu4HI GCNGC 2 cut(s) 6, 91
FokI GGATG 2 cut(s) 69, 313
Fsp4HI GCNGC 2 cut(s) 6, 91
FspBI CTAG 2 cut(s) 222, 441
GluI GCNGC 2 cut(s) 6, 91
HaeIII GGCC 1 cut(s) 974
HapII CCGG 2 cut(s) 770, 1234
HgaI GACGC 1 cut(s) 723
Hin1II CATG 7 cut(s) 45, 121, 342, 553, 626, 979, 997
HincII GTYRAC 1 cut(s) 1198
HindII GTYRAC 1 cut(s) 1198
HindIII AAGCTT 1 cut(s) 558
HpaII CCGG 2 cut(s) 770, 1234
HphI GGTGA 1 cut(s) 306
Hpy166II GTNNAC 4 cut(s) 104, 359, 945, 1198
Hpy188I TCNGA 8 cut(s) 202, 658, 742, 785, 861, 898, 1223, 1272
Hpy188III TCNNGA 6 cut(s) 287, 550, 623, 904, 1075, 1120
Hpy8I GTNNAC 4 cut(s) 104, 359, 945, 1198
HpyAV CCTTC 4 cut(s) 500, 578, 703, 784
HpyCH4III ACNGT 2 cut(s) 110, 460
HpyCH4IV ACGT 2 cut(s) 293, 955
HpyCH4V TGCA 7 cut(s) 8, 117, 338, 670, 697, 1081, 1255
HpyF10VI GCNNNNNNNGC 3 cut(s) 87, 566, 770
HpyF3I CTNAG 4 cut(s) 515, 741, 760, 860
HpySE526I ACGT 2 cut(s) 293, 955
Hsp92II CATG 7 cut(s) 45, 121, 342, 553, 626, 979, 997
Ksp22I TGATCA 1 cut(s) 958
Kzo9I GATC 2 cut(s) 644, 958
LmnI GCTCC 1 cut(s) 611
LweI GCATC 2 cut(s) 782, 1068
MaeI CTAG 2 cut(s) 222, 441
MaeII ACGT 2 cut(s) 293, 955
MaeIII GTNAC 1 cut(s) 73
MalI GATC 2 cut(s) 646, 960
MboI GATC 2 cut(s) 644, 958
MboII GAAGA 7 cut(s) 73, 246, 848, 1029, 1096, 1136, 1210
MfeI CAATTG 1 cut(s) 1250
MlyI GAGTC 2 cut(s) 225, 454
MmeI TCCRAC 1 cut(s) 654
MseI TTAA 4 cut(s) 308, 410, 747, 1005
MslI CAYNNNNRTG 2 cut(s) 1076, 1179
MspA1I CMGCKG 1 cut(s) 950
MspI CCGG 2 cut(s) 770, 1234
MspR9I CCNGG 3 cut(s) 543, 888, 1149
MunI CAATTG 1 cut(s) 1250
MvaI CCWGG 3 cut(s) 543, 888, 1149
MwoI GCNNNNNNNGC 3 cut(s) 87, 566, 770
NdeII GATC 2 cut(s) 644, 958
NlaIII CATG 7 cut(s) 45, 121, 342, 553, 626, 979, 997
NlaIV GGNNCC 1 cut(s) 843
NspI RCATGY 3 cut(s) 45, 121, 342
PaeI GCATGC 1 cut(s) 121
PagI TCATGA 2 cut(s) 549, 622
PfeI GAWTC 8 cut(s) 13, 203, 251, 535, 626, 725, 982, 1159
PflMI CCANNNNNTGG 1 cut(s) 425
PfoI TCCNGGA 1 cut(s) 1147
PkrI GCNGC 2 cut(s) 7, 92
PleI GAGTC 2 cut(s) 224, 453
PpsI GAGTC 2 cut(s) 224, 453
Psp6I CCWGG 3 cut(s) 541, 886, 1147
PspGI CCWGG 3 cut(s) 541, 886, 1147
PspN4I GGNNCC 1 cut(s) 843
RsaI GTAC 4 cut(s) 352, 375, 526, 911
RsaNI GTAC 4 cut(s) 351, 374, 525, 910
RseI CAYNNNNRTG 2 cut(s) 1076, 1179
SaqAI TTAA 4 cut(s) 308, 410, 747, 1005
SatI GCNGC 2 cut(s) 6, 91
Sau3AI GATC 2 cut(s) 644, 958
SchI GAGTC 2 cut(s) 225, 454
ScrFI CCNGG 3 cut(s) 543, 888, 1149
SfaNI GCATC 2 cut(s) 782, 1068
SfcI CTRYAG 2 cut(s) 456, 846
SmiMI CAYNNNNRTG 2 cut(s) 1076, 1179
SmlI CTYRAG 1 cut(s) 827
SmoI CTYRAG 1 cut(s) 827
SphI GCATGC 1 cut(s) 121
SsiI CCGC 5 cut(s) 45, 91, 121, 244, 950
SspMI CTAG 2 cut(s) 222, 441
StyD4I CCNGG 3 cut(s) 541, 886, 1147
TaaI ACNGT 2 cut(s) 110, 460
TaiI ACGT 2 cut(s) 296, 958
TaqI TCGA 4 cut(s) 170, 685, 903, 1157
TatI WGTACW 1 cut(s) 909
TauI GCSGC 1 cut(s) 93
TfiI GAWTC 8 cut(s) 13, 203, 251, 535, 626, 725, 982, 1159
Tru1I TTAA 4 cut(s) 308, 410, 747, 1005
Tru9I TTAA 4 cut(s) 308, 410, 747, 1005
TscAI CASTG 3 cut(s) 113, 465, 1213
TseI GCWGC 1 cut(s) 5
TspDTI ATGAA 4 cut(s) 120, 317, 890, 1013
TspRI CASTG 3 cut(s) 113, 465, 1213
Van91I CCANNNNNTGG 1 cut(s) 425
XapI RAATTY 5 cut(s) 64, 191, 282, 451, 1001
XceI RCATGY 3 cut(s) 45, 121, 342
XcmI CCANNNNNNNNNTGG 2 cut(s) 270, 1238
XspI CTAG 2 cut(s) 222, 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.