Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001632

Physical Location & Seq

Genomic Coordinates Forward (+)

32006597 .. 32009455

Gene Structure 2859 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00240320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGCGGGTTAATCTCTCCTTGGTTGAGGACTGGGATCCGGACAATTGGGTATGCGAATCATGTGAACAGGACAATGGGATGCTTTCTCCAAACTCTGGTATTAAGGAAGACACATTAGAGTCATCAACTGGTAGAGGCCACTATGATGGCATGCATTCAGCAGGTCCCAGCAGAAATTGTAATGGTTCAGGGTCGCAAGCTCACTCTAAGAAGCAAAAGCCTGTTGGGAATAGAAAAGTTATGTTCATTACAAATGAAGAAGTCAGGAGGCTATCTTTGGCAGACCCGCCTCAGAAGACTCCTGTTGGGTACAAAACTGTTACTCCAAAGTCTCCTGTTTCCGGGGTTAAAGCAAATCCTAGCTTTATACGTTCAGAAATTGCGATGCCTCGTAGCCATTGTAGGCCCCCCAAGATGCAAAGCATCTCAAAGATTAATCAGCAAGCATGTCAAAAATTAAAACATTCACAAGCTGATGTCTTCATTCCTGCAACAGATGCTGAAACCTGGAAGAAGAAAGAGCTGCTTCAAAAAAGAAGTCATCCACATATCAGAGCCACTGATGCGTGGCAACCAAGTCCAACAGCCCTCCACGGCCATCTCCGGCGTCACGGTTCCGCTAATACCACCCACCTCCACCCCATCACCTCCCACTTCCACCACCGCTTCAATTTCGACAGATTACTTGGCCACCTTCCAAGCTACGGTGGACACTCTGCAGGCCCAGAACGAGAGACTCCAGTCCCAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3

Protein Analysis

250

Amino Acids

27.86

Weight (kDa)

9.6

Isoelectric Point (pI)

55.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001632)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61090 AT5G61090 AT5G61120 AT5G61120 AT5G61120
fragaria_vesca	FvH4_4g13540 FvH4_4g13550 FvH4_5g13930 FvH4_5g13940 FvH4_5g13940 FvH4_5g13940
malus_domestica	MD06G1202200.v1.1 MD14G1211300.v1.1
prunus_persica	Prupe.5G204200_v2.0.a1 Prupe.5G204200_v2.0.a1 Prupe.5G204400_v2.0.a1
pyrus_communis	pycom06g17820
rosa_chinensis	RchiOBHm_Chr4g0414551 RchiOBHm_Chr4g0414561 RchiOBHm_Chr4g0414571 RchiOBHm_Chr7g0183021
rosa_laevigata	RLG00000005087
rosa_multiflora	Rmu_co8299331.1_g000001 Rmu_sc0000808.1_g000022 Rmu_sc0001063.1_g000013 Rmu_sc0005196.1_g000002
rosa_roxburghii	Rroxscaffold_3G00240320 Rroxscaffold_3G00240450 Rroxscaffold_3G00270840
rosa_rugosa	Rorug06G0451800
rosa_samantha	Rh4AG186600 Rh4AG186700 Rh4BG173800 Rh4BG184200 Rh4CG197200 Rh4CG197500 Rh4DG181800 Rh4DG181900 Rh4DG183300 Rh7AG055300 Rh7AG324400 Rh7BG054700 Rh7BG309400 Rh7CG056000 Rh7CG341300 Rh7DG054800
rosa_wichuraiana	Rw4G015750 Rw7G027480 Rw7G028300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	152
AccB7I	CCANNNNNTGG	1 cut(s)	95
AccIII	TCCGGA	1 cut(s)	37
AciI	CCGC	4 cut(s)	4, 287, 618, 664
AclWI	GGATC	2 cut(s)	29, 42
AcoI	YGGCCR	2 cut(s)	595, 688
AcyI	GRCGYC	1 cut(s)	607
AfaI	GTAC	1 cut(s)	311
AfiI	CCNNNNNNNGG	3 cut(s)	95, 341, 704
AgsI	TTSAA	2 cut(s)	530, 670
AjnI	CCWGG	1 cut(s)	506
AluBI	AGCT	5 cut(s)	200, 363, 473, 523, 702
AluI	AGCT	5 cut(s)	200, 363, 473, 523, 702
Alw26I	GTCTC	2 cut(s)	336, 728
AlwI	GGATC	2 cut(s)	29, 42
AlwNI	CAGNNNCTG	1 cut(s)	500
Aor13HI	TCCGGA	1 cut(s)	37
AoxI	GGCC	5 cut(s)	136, 404, 595, 688, 721
ApeKI	GCWGC	1 cut(s)	523
ArsI	GACNNNNNNTTYG	2 cut(s)	523, 555
AseI	ATTAAT	1 cut(s)	435
AspS9I	GGNCC	3 cut(s)	164, 405, 722
AsuC2I	CCSGG	1 cut(s)	343
AsuHPI	GGTGA	1 cut(s)	637
AvaII	GGWCC	1 cut(s)	164
BalI	TGGCCA	1 cut(s)	690
BamHI	GGATCC	1 cut(s)	34
BbsI	GAAGAC	3 cut(s)	114, 302, 472
BbvI	GCAGC	1 cut(s)	510
BccI	CCATC	3 cut(s)	140, 606, 650
BceAI	ACGGC	1 cut(s)	610
BciT130I	CCWGG	1 cut(s)	508
BcnI	CCSGG	1 cut(s)	343
BcoDI	GTCTC	2 cut(s)	336, 728
BfaI	CTAG	1 cut(s)	360
BfmI	CTRYAG	1 cut(s)	717
BfuAI	ACCTGC	1 cut(s)	152
BisI	GCNGC	1 cut(s)	524
BlsI	GCNGC	1 cut(s)	525
Bme1390I	CCNGG	2 cut(s)	343, 508
Bme18I	GGWCC	1 cut(s)	164
BmgT120I	GGNCC	3 cut(s)	164, 405, 722
BmiI	GGNNCC	4 cut(s)	36, 166, 407, 616
BmrFI	CCNGG	2 cut(s)	343, 508
BmrI	ACTGGG	1 cut(s)	40
BmsI	GCATC	6 cut(s)	69, 375, 405, 432, 487, 553
BmuI	ACTGGG	1 cut(s)	40
BoxI	GACNNNNGTC	1 cut(s)	740
BpiI	GAAGAC	3 cut(s)	114, 302, 472
BpmI	CTGGAG	1 cut(s)	723
BpuMI	CCSGG	1 cut(s)	343
BsaHI	GRCGYC	1 cut(s)	607
BsaJI	CCNNGG	3 cut(s)	18, 342, 592
BsaWI	WCCGGW	1 cut(s)	37
BsaXI	ACNNNNNCTCC	2 cut(s)	307, 337
Bsc4I	CCNNNNNNNGG	3 cut(s)	95, 341, 704
Bse1I	ACTGG	3 cut(s)	35, 133, 740
BseAI	TCCGGA	1 cut(s)	37
BseBI	CCWGG	1 cut(s)	508
BseDI	CCNNGG	3 cut(s)	18, 342, 592
BseGI	GGATG	2 cut(s)	84, 541
BseLI	CCNNNNNNNGG	3 cut(s)	95, 341, 704
BseMII	CTCAG	1 cut(s)	305
BseNI	ACTGG	3 cut(s)	35, 133, 740
BseXI	GCAGC	1 cut(s)	510
BseYI	CCCAGC	1 cut(s)	167
BshFI	GGCC	5 cut(s)	138, 406, 597, 690, 723
BsiSI	CCGG	3 cut(s)	38, 342, 604
BslFI	GGGAC	2 cut(s)	150, 728
BslI	CCNNNNNNNGG	3 cut(s)	95, 341, 704
BsmAI	GTCTC	2 cut(s)	336, 728
BsmFI	GGGAC	2 cut(s)	150, 728
BsmI	GAATGC	1 cut(s)	154
BsnI	GGCC	5 cut(s)	138, 406, 597, 690, 723
Bsp13I	TCCGGA	1 cut(s)	37
Bsp143I	GATC	1 cut(s)	34
BspACI	CCGC	4 cut(s)	4, 287, 618, 664
BspANI	GGCC	5 cut(s)	138, 406, 597, 690, 723
BspCNI	CTCAG	1 cut(s)	304
BspEI	TCCGGA	1 cut(s)	37
BspLI	GGNNCC	4 cut(s)	36, 166, 407, 616
BspMAI	CTGCAG	1 cut(s)	721
BspMI	ACCTGC	1 cut(s)	152
BspPI	GGATC	2 cut(s)	29, 42
BsrI	ACTGG	3 cut(s)	35, 133, 740
BssECI	CCNNGG	3 cut(s)	18, 342, 592
BssMI	GATC	1 cut(s)	34
BssNI	GRCGYC	1 cut(s)	607
BssT1I	CCWWGG	1 cut(s)	18
Bst2UI	CCWGG	1 cut(s)	508
Bst4CI	ACNGT	3 cut(s)	319, 614, 707
BstACI	GRCGYC	1 cut(s)	607
BstAPI	GCANNNNNTGC	1 cut(s)	497
BstC8I	GCNNGC	4 cut(s)	152, 198, 444, 721
BstDEI	CTNAG	2 cut(s)	207, 291
BstDSI	CCRYGG	1 cut(s)	592
BstF5I	GGATG	2 cut(s)	84, 541
BstKTI	GATC	1 cut(s)	37
BstMAI	GTCTC	2 cut(s)	336, 728
BstMBI	GATC	1 cut(s)	34
BstMWI	GCNNNNNNNGC	2 cut(s)	497, 563
BstNI	CCWGG	1 cut(s)	508
BstNSI	RCATGY	2 cut(s)	154, 450
BstPAI	GACNNNNGTC	1 cut(s)	740
BstSCI	CCNGG	2 cut(s)	341, 506
BstSFI	CTRYAG	1 cut(s)	717
BstV1I	GCAGC	1 cut(s)	510
BstV2I	GAAGAC	3 cut(s)	114, 302, 472
BstX2I	RGATCY	1 cut(s)	34
BstXI	CCANNNNNNTGG	1 cut(s)	146
BstYI	RGATCY	1 cut(s)	34
BsuRI	GGCC	5 cut(s)	138, 406, 597, 690, 723
BtgI	CCRYGG	1 cut(s)	592
BtgZI	GCGATG	1 cut(s)	398
BtsCI	GGATG	2 cut(s)	84, 541
BtsIMutI	CAGTG	1 cut(s)	558
BveI	ACCTGC	1 cut(s)	152
Cac8I	GCNNGC	4 cut(s)	152, 198, 444, 721
CaiI	CAGNNNCTG	1 cut(s)	500
Cfr13I	GGNCC	3 cut(s)	164, 405, 722
CseI	GACGC	1 cut(s)	596
Csp6I	GTAC	1 cut(s)	310
CviAII	CATG	3 cut(s)	60, 151, 447
CviQI	GTAC	1 cut(s)	310
DdeI	CTNAG	2 cut(s)	207, 291
DpnI	GATC	1 cut(s)	36
DpnII	GATC	1 cut(s)	34
EaeI	YGGCCR	2 cut(s)	595, 688
Eco130I	CCWWGG	1 cut(s)	18
Eco47I	GGWCC	1 cut(s)	164
EcoO109I	RGGNCCY	2 cut(s)	164, 405
EcoRII	CCWGG	1 cut(s)	506
EcoT14I	CCWWGG	1 cut(s)	18
EcoT22I	ATGCAT	1 cut(s)	156
ErhI	CCWWGG	1 cut(s)	18
FaeI	CATG	3 cut(s)	63, 154, 450
FaiI	YATR	8 cut(s)	52, 61, 144, 152, 242, 368, 448, 549
FalI	AAGNNNNNCTT	2 cut(s)	510, 542
FaqI	GGGAC	2 cut(s)	150, 728
FatI	CATG	3 cut(s)	59, 150, 446
FauI	CCCGC	1 cut(s)	294
Fnu4HI	GCNGC	1 cut(s)	524
FokI	GGATG	2 cut(s)	91, 528
Fsp4HI	GCNGC	1 cut(s)	524
FspBI	CTAG	1 cut(s)	360
GluI	GCNGC	1 cut(s)	524
GsaI	CCCAGC	1 cut(s)	171
GsuI	CTGGAG	1 cut(s)	723
HaeIII	GGCC	5 cut(s)	138, 406, 597, 690, 723
HapII	CCGG	3 cut(s)	38, 342, 604
HgaI	GACGC	1 cut(s)	596
Hin1I	GRCGYC	1 cut(s)	607
Hin1II	CATG	3 cut(s)	63, 154, 450
HinfI	GANTC	4 cut(s)	56, 119, 298, 736
HpaII	CCGG	3 cut(s)	38, 342, 604
HphI	GGTGA	1 cut(s)	637
Hpy166II	GTNNAC	2 cut(s)	65, 710
Hpy188I	TCNGA	3 cut(s)	294, 376, 554
Hpy188III	TCNNGA	2 cut(s)	38, 265
Hpy8I	GTNNAC	2 cut(s)	65, 710
HpyAV	CCTTC	1 cut(s)	704
HpyCH4III	ACNGT	3 cut(s)	319, 614, 707
HpyCH4IV	ACGT	1 cut(s)	370
HpyCH4V	TGCA	4 cut(s)	154, 418, 491, 719
HpyF10VI	GCNNNNNNNGC	2 cut(s)	497, 563
HpyF3I	CTNAG	2 cut(s)	207, 291
HpySE526I	ACGT	1 cut(s)	370
Hsp92I	GRCGYC	1 cut(s)	607
Hsp92II	CATG	3 cut(s)	63, 154, 450
Kpn2I	TCCGGA	1 cut(s)	37
Kzo9I	GATC	1 cut(s)	34
Lsp1109I	GCAGC	1 cut(s)	510
LweI	GCATC	6 cut(s)	69, 375, 405, 432, 487, 553
MaeI	CTAG	1 cut(s)	360
MaeII	ACGT	1 cut(s)	370
MaeIII	GTNAC	2 cut(s)	319, 608
MalI	GATC	1 cut(s)	36
MboI	GATC	1 cut(s)	34
MboII	GAAGA	6 cut(s)	119, 269, 307, 472, 523, 526
MfeI	CAATTG	1 cut(s)	43
MflI	RGATCY	1 cut(s)	34
MlsI	TGGCCA	1 cut(s)	690
MluCI	AATT	5 cut(s)	43, 175, 378, 455, 670
MluNI	TGGCCA	1 cut(s)	690
MlyI	GAGTC	3 cut(s)	128, 292, 730
MmeI	TCCRAC	1 cut(s)	605
MnlI	CCTC	8 cut(s)	19, 128, 261, 300, 399, 599, 644, 658
Mox20I	TGGCCA	1 cut(s)	690
Mph1103I	ATGCAT	1 cut(s)	156
MroI	TCCGGA	1 cut(s)	37
MscI	TGGCCA	1 cut(s)	690
MseI	TTAA	5 cut(s)	9, 102, 348, 435, 458
MslI	CAYNNNNRTG	1 cut(s)	144
Msp20I	TGGCCA	1 cut(s)	690
MspI	CCGG	3 cut(s)	38, 342, 604
MspR9I	CCNGG	2 cut(s)	343, 508
MunI	CAATTG	1 cut(s)	43
Mva1269I	GAATGC	1 cut(s)	154
MvaI	CCWGG	1 cut(s)	508
MwoI	GCNNNNNNNGC	2 cut(s)	497, 563
NciI	CCSGG	1 cut(s)	343
NdeII	GATC	1 cut(s)	34
NlaIII	CATG	3 cut(s)	63, 154, 450
NlaIV	GGNNCC	4 cut(s)	36, 166, 407, 616
NmuCI	GTSAC	1 cut(s)	608
NsiI	ATGCAT	1 cut(s)	156
NspI	RCATGY	2 cut(s)	154, 450
PaeI	GCATGC	1 cut(s)	154
PctI	GAATGC	1 cut(s)	154
PfeI	GAWTC	1 cut(s)	56
PflMI	CCANNNNNTGG	1 cut(s)	95
PkrI	GCNGC	1 cut(s)	525
PleI	GAGTC	3 cut(s)	127, 292, 730
PpsI	GAGTC	3 cut(s)	127, 292, 730
PpuMI	RGGWCCY	1 cut(s)	164
PshAI	GACNNNNGTC	1 cut(s)	740
PshBI	ATTAAT	1 cut(s)	435
Psp5II	RGGWCCY	1 cut(s)	164
Psp6I	CCWGG	1 cut(s)	506
PspFI	CCCAGC	1 cut(s)	167
PspGI	CCWGG	1 cut(s)	506
PspN4I	GGNNCC	4 cut(s)	36, 166, 407, 616
PspPI	GGNCC	3 cut(s)	164, 405, 722
PspPPI	RGGWCCY	1 cut(s)	164
PstI	CTGCAG	1 cut(s)	721
PstNI	CAGNNNCTG	1 cut(s)	500
PsuI	RGATCY	1 cut(s)	34
RsaI	GTAC	1 cut(s)	311
RsaNI	GTAC	1 cut(s)	310
RseI	CAYNNNNRTG	1 cut(s)	144
SaqAI	TTAA	5 cut(s)	9, 102, 348, 435, 458
SatI	GCNGC	1 cut(s)	524
Sau3AI	GATC	1 cut(s)	34
Sau96I	GGNCC	3 cut(s)	164, 405, 722
SchI	GAGTC	3 cut(s)	128, 292, 730
ScrFI	CCNGG	2 cut(s)	343, 508
SfaNI	GCATC	6 cut(s)	69, 375, 405, 432, 487, 553
SfcI	CTRYAG	1 cut(s)	717
SinI	GGWCC	1 cut(s)	164
SmiMI	CAYNNNNRTG	1 cut(s)	144
SphI	GCATGC	1 cut(s)	154
Sse9I	AATT	5 cut(s)	43, 175, 378, 455, 670
SsiI	CCGC	4 cut(s)	4, 287, 618, 664
SspMI	CTAG	1 cut(s)	360
StyD4I	CCNGG	2 cut(s)	341, 506
StyI	CCWWGG	1 cut(s)	18
TaaI	ACNGT	3 cut(s)	319, 614, 707
TaiI	ACGT	1 cut(s)	373
TaqI	TCGA	1 cut(s)	675
TasI	AATT	5 cut(s)	43, 175, 378, 455, 670
TfiI	GAWTC	1 cut(s)	56
Tru1I	TTAA	5 cut(s)	9, 102, 348, 435, 458
Tru9I	TTAA	5 cut(s)	9, 102, 348, 435, 458
TscAI	CASTG	1 cut(s)	565
TseFI	GTSAC	1 cut(s)	608
TseI	GCWGC	1 cut(s)	523
Tsp45I	GTSAC	1 cut(s)	608
TspDTI	ATGAA	3 cut(s)	235, 270, 472
TspRI	CASTG	1 cut(s)	565
Van91I	CCANNNNNTGG	1 cut(s)	95
VpaK11BI	GGWCC	1 cut(s)	164
VspI	ATTAAT	1 cut(s)	435
XceI	RCATGY	2 cut(s)	154, 450
XspI	CTAG	1 cut(s)	360
Zsp2I	ATGCAT	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.