BEST Arabidopsis thaliana protein match is
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G61090 AT5G61090 AT5G61120 AT5G61120 AT5G61120 |
| fragaria_vesca | FvH4_4g13540 FvH4_4g13550 FvH4_5g13930 FvH4_5g13940 FvH4_5g13940 FvH4_5g13940 |
| malus_domestica | MD06G1202200.v1.1 MD14G1211300.v1.1 |
| prunus_persica | Prupe.5G204200_v2.0.a1 Prupe.5G204200_v2.0.a1 Prupe.5G204400_v2.0.a1 |
| pyrus_communis | pycom06g17820 |
| rosa_chinensis | RchiOBHm_Chr4g0414551 RchiOBHm_Chr4g0414561 RchiOBHm_Chr4g0414571 RchiOBHm_Chr7g0183021 |
| rosa_laevigata | RLG00000005087 |
| rosa_multiflora | Rmu_co8299331.1_g000001 Rmu_sc0000808.1_g000022 Rmu_sc0001063.1_g000013 Rmu_sc0005196.1_g000002 |
| rosa_roxburghii | Rroxscaffold_3G00240320 Rroxscaffold_3G00240450 Rroxscaffold_3G00270840 |
| rosa_rugosa | Rorug06G0451800 |
| rosa_samantha | Rh4AG186600 Rh4AG186700 Rh4BG173800 Rh4BG184200 Rh4CG197200 Rh4CG197500 Rh4DG181800 Rh4DG181900 Rh4DG183300 Rh7AG055300 Rh7AG324400 Rh7BG054700 Rh7BG309400 Rh7CG056000 Rh7CG341300 Rh7DG054800 |
| rosa_wichuraiana | Rw4G015750 Rw7G027480 Rw7G028300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AbsI | CCTCGAGG | 1 cut(s) | 1217 |
| Acc36I | ACCTGC | 1 cut(s) | 89 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1411 |
| AccBSI | CCGCTC | 1 cut(s) | 1360 |
| AccI | GTMKAC | 1 cut(s) | 718 |
| AciI | CCGC | 2 cut(s) | 1360, 1661 |
| AclWI | GGATC | 4 cut(s) | 1169, 1233, 1598, 1611 |
| AcsI | RAATTY | 5 cut(s) | 412, 1133, 1225, 1296, 1389 |
| AcuI | CTGAAG | 3 cut(s) | 498, 738, 1038 |
| AfaI | GTAC | 2 cut(s) | 320, 1492 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 539, 1248, 1411 |
| AflIII | ACRYGT | 2 cut(s) | 44, 520 |
| AgsI | TTSAA | 9 cut(s) | 362, 397, 601, 609, 827, 941, 963, 1286, 1511 |
| AjiI | CACGTC | 1 cut(s) | 1727 |
| AjnI | CCWGG | 4 cut(s) | 143, 847, 1149, 1404 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 156, 188, 1703, 1735 |
| Alw21I | GWGCWC | 2 cut(s) | 109, 956 |
| Alw26I | GTCTC | 3 cut(s) | 477, 1055, 1095 |
| Alw44I | GTGCAC | 2 cut(s) | 105, 952 |
| AlwI | GGATC | 4 cut(s) | 1169, 1233, 1598, 1611 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1016 |
| Ama87I | CYCGRG | 3 cut(s) | 1031, 1217, 1672 |
| AoxI | GGCC | 2 cut(s) | 1657, 1790 |
| ApaLI | GTGCAC | 2 cut(s) | 105, 952 |
| ApeKI | GCWGC | 2 cut(s) | 1351, 1441 |
| ApoI | RAATTY | 5 cut(s) | 412, 1133, 1225, 1296, 1389 |
| AspS9I | GGNCC | 2 cut(s) | 1658, 1790 |
| AsuC2I | CCSGG | 1 cut(s) | 1734 |
| AsuHPI | GGTGA | 3 cut(s) | 675, 972, 1700 |
| AvaI | CYCGRG | 3 cut(s) | 1031, 1217, 1672 |
| BaeGI | GKGCMC | 2 cut(s) | 109, 956 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 205, 238, 455, 488 |
| BamHI | GGATCC | 1 cut(s) | 1603 |
| BauI | CACGAG | 1 cut(s) | 102 |
| BbsI | GAAGAC | 3 cut(s) | 1064, 1585, 1788 |
| Bbv12I | GWGCWC | 2 cut(s) | 109, 956 |
| BbvI | GCAGC | 2 cut(s) | 1338, 1428 |
| BccI | CCATC | 3 cut(s) | 241, 1357, 1679 |
| BceAI | ACGGC | 3 cut(s) | 69, 934, 1777 |
| BciT130I | CCWGG | 4 cut(s) | 145, 849, 1151, 1406 |
| BclI | TGATCA | 1 cut(s) | 661 |
| BcnI | CCSGG | 1 cut(s) | 1734 |
| BcoDI | GTCTC | 3 cut(s) | 477, 1055, 1095 |
| BfaI | CTAG | 5 cut(s) | 282, 501, 534, 1047, 1617 |
| BfmI | CTRYAG | 3 cut(s) | 417, 1186, 1442 |
| BfuAI | ACCTGC | 1 cut(s) | 89 |
| BglII | AGATCT | 1 cut(s) | 1027 |
| BisI | GCNGC | 2 cut(s) | 1352, 1442 |
| BlsI | GCNGC | 2 cut(s) | 1353, 1443 |
| Bme1390I | CCNGG | 5 cut(s) | 145, 849, 1151, 1406, 1734 |
| BmeT110I | CYCGRG | 3 cut(s) | 1031, 1217, 1672 |
| BmgBI | CACGTC | 1 cut(s) | 1727 |
| BmgT120I | GGNCC | 2 cut(s) | 1658, 1790 |
| BmiI | GGNNCC | 5 cut(s) | 624, 655, 948, 1148, 1605 |
| BmrFI | CCNGG | 5 cut(s) | 145, 849, 1151, 1406, 1734 |
| BmrI | ACTGGG | 1 cut(s) | 833 |
| BmsI | GCATC | 5 cut(s) | 203, 238, 573, 1003, 1693 |
| BmuI | ACTGGG | 1 cut(s) | 833 |
| BpiI | GAAGAC | 3 cut(s) | 1064, 1585, 1788 |
| BpmI | CTGGAG | 2 cut(s) | 870, 1681 |
| BpuEI | CTTGAG | 2 cut(s) | 1051, 1376 |
| BpuMI | CCSGG | 1 cut(s) | 1734 |
| Bsa29I | ATCGAT | 1 cut(s) | 1173 |
| BsaI | GGTCTC | 1 cut(s) | 477 |
| BsaJI | CCNNGG | 7 cut(s) | 144, 217, 433, 467, 1150, 1405, 1598 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1192, 1222 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 539, 1248, 1411 |
| Bse118I | RCCGGY | 1 cut(s) | 295 |
| Bse1I | ACTGG | 6 cut(s) | 310, 657, 839, 990, 1698, 1771 |
| Bse3DI | GCAATG | 1 cut(s) | 72 |
| BseBI | CCWGG | 4 cut(s) | 145, 849, 1151, 1406 |
| BseCI | ATCGAT | 1 cut(s) | 1173 |
| BseDI | CCNNGG | 7 cut(s) | 144, 217, 433, 467, 1150, 1405, 1598 |
| BseGI | GGATG | 5 cut(s) | 194, 229, 805, 818, 1368 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 539, 1248, 1411 |
| BseMI | GCAATG | 1 cut(s) | 72 |
| BseMII | CTCAG | 4 cut(s) | 647, 727, 1767, 1769 |
| BseNI | ACTGG | 6 cut(s) | 310, 657, 839, 990, 1698, 1771 |
| BseRI | GAGGAG | 2 cut(s) | 869, 967 |
| BseSI | GKGCMC | 2 cut(s) | 109, 956 |
| BseXI | GCAGC | 2 cut(s) | 1338, 1428 |
| BshFI | GGCC | 2 cut(s) | 1659, 1792 |
| BshVI | ATCGAT | 1 cut(s) | 1173 |
| BsiHKAI | GWGCWC | 2 cut(s) | 109, 956 |
| BsiHKCI | CYCGRG | 3 cut(s) | 1031, 1217, 1672 |
| BsiSI | CCGG | 2 cut(s) | 296, 1733 |
| BslFI | GGGAC | 3 cut(s) | 415, 451, 1167 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 539, 1248, 1411 |
| BsmAI | GTCTC | 3 cut(s) | 477, 1055, 1095 |
| BsmFI | GGGAC | 3 cut(s) | 415, 451, 1167 |
| BsnI | GGCC | 2 cut(s) | 1659, 1792 |
| Bso31I | GGTCTC | 1 cut(s) | 477 |
| BsoBI | CYCGRG | 3 cut(s) | 1031, 1217, 1672 |
| Bsp1286I | GDGCHC | 2 cut(s) | 109, 956 |
| Bsp143I | GATC | 8 cut(s) | 371, 661, 1027, 1170, 1174, 1238, 1328, 1603 |
| Bsp19I | CCATGG | 1 cut(s) | 217 |
| BspACI | CCGC | 2 cut(s) | 1360, 1661 |
| BspANI | GGCC | 2 cut(s) | 1659, 1792 |
| BspCNI | CTCAG | 4 cut(s) | 646, 726, 1768, 1768 |
| BspDI | ATCGAT | 1 cut(s) | 1173 |
| BspLI | GGNNCC | 5 cut(s) | 624, 655, 948, 1148, 1605 |
| BspMAI | CTGCAG | 1 cut(s) | 1446 |
| BspMI | ACCTGC | 1 cut(s) | 89 |
| BspPI | GGATC | 4 cut(s) | 1169, 1233, 1598, 1611 |
| BspTNI | GGTCTC | 1 cut(s) | 477 |
| BsrBI | CCGCTC | 1 cut(s) | 1360 |
| BsrDI | GCAATG | 1 cut(s) | 72 |
| BsrFI | RCCGGY | 1 cut(s) | 295 |
| BsrI | ACTGG | 6 cut(s) | 310, 657, 839, 990, 1698, 1771 |
| BssAI | RCCGGY | 1 cut(s) | 295 |
| BssECI | CCNNGG | 7 cut(s) | 144, 217, 433, 467, 1150, 1405, 1598 |
| BssMI | GATC | 8 cut(s) | 371, 661, 1027, 1170, 1174, 1238, 1328, 1603 |
| BssNAI | GTATAC | 1 cut(s) | 719 |
| BssSI | CACGAG | 1 cut(s) | 102 |
| BssT1I | CCWWGG | 2 cut(s) | 217, 433 |
| Bst1107I | GTATAC | 1 cut(s) | 719 |
| Bst2BI | CACGAG | 1 cut(s) | 102 |
| Bst2UI | CCWGG | 4 cut(s) | 145, 849, 1151, 1406 |
| Bst4CI | ACNGT | 1 cut(s) | 958 |
| Bst6I | CTCTTC | 1 cut(s) | 917 |
| BstC8I | GCNNGC | 5 cut(s) | 122, 273, 483, 1044, 1661 |
| BstDEI | CTNAG | 7 cut(s) | 11, 633, 713, 805, 984, 1755, 1776 |
| BstDSI | CCRYGG | 1 cut(s) | 217 |
| BstF5I | GGATG | 5 cut(s) | 194, 229, 805, 818, 1368 |
| BstKTI | GATC | 8 cut(s) | 374, 664, 1030, 1173, 1177, 1241, 1331, 1606 |
| BstMAI | GTCTC | 3 cut(s) | 477, 1055, 1095 |
| BstMBI | GATC | 8 cut(s) | 371, 661, 1027, 1170, 1174, 1238, 1328, 1603 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 90, 456, 629, 1357, 1520 |
| BstNI | CCWGG | 4 cut(s) | 145, 849, 1151, 1406 |
| BstNSI | RCATGY | 4 cut(s) | 48, 124, 524, 863 |
| BstSCI | CCNGG | 5 cut(s) | 143, 847, 1149, 1404, 1732 |
| BstSFI | CTRYAG | 3 cut(s) | 417, 1186, 1442 |
| BstSLI | GKGCMC | 2 cut(s) | 109, 956 |
| BstV1I | GCAGC | 2 cut(s) | 1338, 1428 |
| BstV2I | GAAGAC | 3 cut(s) | 1064, 1585, 1788 |
| BstX2I | RGATCY | 2 cut(s) | 1027, 1603 |
| BstYI | RGATCY | 2 cut(s) | 1027, 1603 |
| BstZ17I | GTATAC | 1 cut(s) | 719 |
| Bsu15I | ATCGAT | 1 cut(s) | 1173 |
| BsuRI | GGCC | 2 cut(s) | 1659, 1792 |
| BsuTUI | ATCGAT | 1 cut(s) | 1173 |
| BtgI | CCRYGG | 1 cut(s) | 217 |
| BtrI | CACGTC | 1 cut(s) | 1727 |
| BtsCI | GGATG | 5 cut(s) | 194, 229, 805, 818, 1368 |
| BtsI | GCAGTG | 1 cut(s) | 476 |
| BtsIMutI | CAGTG | 4 cut(s) | 201, 476, 664, 1705 |
| BveI | ACCTGC | 1 cut(s) | 89 |
| Cac8I | GCNNGC | 5 cut(s) | 122, 273, 483, 1044, 1661 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1016 |
| Cfr10I | RCCGGY | 1 cut(s) | 295 |
| Cfr13I | GGNCC | 2 cut(s) | 1658, 1790 |
| ClaI | ATCGAT | 1 cut(s) | 1173 |
| Csp6I | GTAC | 2 cut(s) | 319, 1491 |
| CviQI | GTAC | 2 cut(s) | 319, 1491 |
| DdeI | CTNAG | 7 cut(s) | 11, 633, 713, 805, 984, 1755, 1776 |
| DpnI | GATC | 8 cut(s) | 373, 663, 1029, 1172, 1176, 1240, 1330, 1605 |
| DpnII | GATC | 8 cut(s) | 371, 661, 1027, 1170, 1174, 1238, 1328, 1603 |
| DraI | TTTAAA | 1 cut(s) | 210 |
| Eam1104I | CTCTTC | 1 cut(s) | 917 |
| EarI | CTCTTC | 1 cut(s) | 917 |
| Eco130I | CCWWGG | 2 cut(s) | 217, 433 |
| Eco31I | GGTCTC | 1 cut(s) | 477 |
| Eco32I | GATATC | 1 cut(s) | 1258 |
| Eco57I | CTGAAG | 3 cut(s) | 498, 738, 1038 |
| Eco88I | CYCGRG | 3 cut(s) | 1031, 1217, 1672 |
| EcoRI | GAATTC | 1 cut(s) | 1133 |
| EcoRII | CCWGG | 4 cut(s) | 143, 847, 1149, 1404 |
| EcoRV | GATATC | 1 cut(s) | 1258 |
| EcoT14I | CCWWGG | 2 cut(s) | 217, 433 |
| EcoT22I | ATGCAT | 1 cut(s) | 231 |
| ErhI | CCWWGG | 2 cut(s) | 217, 433 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 156, 188, 788, 820 |
| FaqI | GGGAC | 3 cut(s) | 415, 451, 1167 |
| FauI | CCCGC | 1 cut(s) | 1668 |
| FbaI | TGATCA | 1 cut(s) | 661 |
| FblI | GTMKAC | 1 cut(s) | 718 |
| Fnu4HI | GCNGC | 2 cut(s) | 1352, 1442 |
| FokI | GGATG | 5 cut(s) | 181, 216, 805, 812, 1375 |
| Fsp4HI | GCNGC | 2 cut(s) | 1352, 1442 |
| FspBI | CTAG | 5 cut(s) | 282, 501, 534, 1047, 1617 |
| GluI | GCNGC | 2 cut(s) | 1352, 1442 |
| GsuI | CTGGAG | 2 cut(s) | 870, 1681 |
| HaeIII | GGCC | 2 cut(s) | 1659, 1792 |
| HapII | CCGG | 2 cut(s) | 296, 1733 |
| HincII | GTYRAC | 1 cut(s) | 1461 |
| HindII | GTYRAC | 1 cut(s) | 1461 |
| HindIII | AAGCTT | 3 cut(s) | 527, 1040, 1465 |
| HinfI | GANTC | 5 cut(s) | 605, 736, 1376, 1479, 1594 |
| HpaII | CCGG | 2 cut(s) | 296, 1733 |
| HphI | GGTGA | 3 cut(s) | 675, 972, 1700 |
| Hpy166II | GTNNAC | 6 cut(s) | 107, 719, 954, 1461, 1540, 1730 |
| Hpy188I | TCNGA | 9 cut(s) | 328, 636, 918, 1142, 1435, 1533, 1599, 1639, 1758 |
| Hpy8I | GTNNAC | 6 cut(s) | 107, 719, 954, 1461, 1540, 1730 |
| Hpy99I | CGWCG | 1 cut(s) | 1812 |
| HpyAV | CCTTC | 5 cut(s) | 279, 323, 595, 1292, 1553 |
| HpyCH4III | ACNGT | 1 cut(s) | 958 |
| HpyCH4IV | ACGT | 1 cut(s) | 1726 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 90, 456, 629, 1357, 1520 |
| HpyF3I | CTNAG | 7 cut(s) | 11, 633, 713, 805, 984, 1755, 1776 |
| HpySE526I | ACGT | 1 cut(s) | 1726 |
| Ksp22I | TGATCA | 1 cut(s) | 661 |
| Kzo9I | GATC | 8 cut(s) | 371, 661, 1027, 1170, 1174, 1238, 1328, 1603 |
| LmnI | GCTCC | 5 cut(s) | 628, 772, 850, 856, 946 |
| Lsp1109I | GCAGC | 2 cut(s) | 1338, 1428 |
| LweI | GCATC | 5 cut(s) | 203, 238, 573, 1003, 1693 |
| MaeI | CTAG | 5 cut(s) | 282, 501, 534, 1047, 1617 |
| MaeII | ACGT | 1 cut(s) | 1726 |
| MaeIII | GTNAC | 5 cut(s) | 56, 239, 907, 1087, 1612 |
| MalI | GATC | 8 cut(s) | 373, 663, 1029, 1172, 1176, 1240, 1330, 1605 |
| MbiI | CCGCTC | 1 cut(s) | 1360 |
| MboI | GATC | 8 cut(s) | 371, 661, 1027, 1170, 1174, 1238, 1328, 1603 |
| MfeI | CAATTG | 1 cut(s) | 936 |
| MflI | RGATCY | 2 cut(s) | 1027, 1603 |
| MhlI | GDGCHC | 2 cut(s) | 109, 956 |
| MmeI | TCCRAC | 2 cut(s) | 280, 1273 |
| Mph1103I | ATGCAT | 1 cut(s) | 231 |
| MseI | TTAA | 4 cut(s) | 209, 315, 690, 890 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1005, 1011 |
| MspA1I | CMGCKG | 1 cut(s) | 1441 |
| MspI | CCGG | 2 cut(s) | 296, 1733 |
| MspR9I | CCNGG | 5 cut(s) | 145, 849, 1151, 1406, 1734 |
| MunI | CAATTG | 1 cut(s) | 936 |
| MvaI | CCWGG | 4 cut(s) | 145, 849, 1151, 1406 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 90, 456, 629, 1357, 1520 |
| NciI | CCSGG | 1 cut(s) | 1734 |
| NcoI | CCATGG | 1 cut(s) | 217 |
| NdeII | GATC | 8 cut(s) | 371, 661, 1027, 1170, 1174, 1238, 1328, 1603 |
| NlaIV | GGNNCC | 5 cut(s) | 624, 655, 948, 1148, 1605 |
| NmeAIII | GCCGAG | 1 cut(s) | 1327 |
| NmuCI | GTSAC | 1 cut(s) | 1087 |
| NsiI | ATGCAT | 1 cut(s) | 231 |
| NspI | RCATGY | 4 cut(s) | 48, 124, 524, 863 |
| PaeI | GCATGC | 1 cut(s) | 124 |
| PaeR7I | CTCGAG | 3 cut(s) | 1031, 1217, 1672 |
| PciI | ACATGT | 2 cut(s) | 44, 520 |
| PfeI | GAWTC | 5 cut(s) | 605, 736, 1376, 1479, 1594 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1411 |
| PfoI | TCCNGGA | 1 cut(s) | 847 |
| PkrI | GCNGC | 2 cut(s) | 1353, 1443 |
| PscI | ACATGT | 2 cut(s) | 44, 520 |
| Psp6I | CCWGG | 4 cut(s) | 143, 847, 1149, 1404 |
| PspGI | CCWGG | 4 cut(s) | 143, 847, 1149, 1404 |
| PspN4I | GGNNCC | 5 cut(s) | 624, 655, 948, 1148, 1605 |
| PspPI | GGNCC | 2 cut(s) | 1658, 1790 |
| PspXI | VCTCGAGB | 2 cut(s) | 1217, 1672 |
| PstI | CTGCAG | 1 cut(s) | 1446 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1016 |
| PsuI | RGATCY | 2 cut(s) | 1027, 1603 |
| PvuII | CAGCTG | 1 cut(s) | 1441 |
| RsaI | GTAC | 2 cut(s) | 320, 1492 |
| RsaNI | GTAC | 2 cut(s) | 319, 1491 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1005, 1011 |
| SaqAI | TTAA | 4 cut(s) | 209, 315, 690, 890 |
| SatI | GCNGC | 2 cut(s) | 1352, 1442 |
| Sau3AI | GATC | 8 cut(s) | 371, 661, 1027, 1170, 1174, 1238, 1328, 1603 |
| Sau96I | GGNCC | 2 cut(s) | 1658, 1790 |
| ScrFI | CCNGG | 5 cut(s) | 145, 849, 1151, 1406, 1734 |
| SduI | GDGCHC | 2 cut(s) | 109, 956 |
| SfaNI | GCATC | 5 cut(s) | 203, 238, 573, 1003, 1693 |
| SfcI | CTRYAG | 3 cut(s) | 417, 1186, 1442 |
| Sfr274I | CTCGAG | 3 cut(s) | 1031, 1217, 1672 |
| SlaI | CTCGAG | 3 cut(s) | 1031, 1217, 1672 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1005, 1011 |
| SmlI | CTYRAG | 5 cut(s) | 1031, 1066, 1217, 1355, 1672 |
| SmoI | CTYRAG | 5 cut(s) | 1031, 1066, 1217, 1355, 1672 |
| SphI | GCATGC | 1 cut(s) | 124 |
| SsiI | CCGC | 2 cut(s) | 1360, 1661 |
| SspI | AATATT | 2 cut(s) | 597, 1321 |
| SspMI | CTAG | 5 cut(s) | 282, 501, 534, 1047, 1617 |
| StyD4I | CCNGG | 5 cut(s) | 143, 847, 1149, 1404, 1732 |
| StyI | CCWWGG | 2 cut(s) | 217, 433 |
| TaaI | ACNGT | 1 cut(s) | 958 |
| TaiI | ACGT | 1 cut(s) | 1729 |
| TaqI | TCGA | 9 cut(s) | 667, 781, 1032, 1173, 1218, 1237, 1379, 1673, 1807 |
| TatI | WGTACW | 1 cut(s) | 318 |
| TfiI | GAWTC | 5 cut(s) | 605, 736, 1376, 1479, 1594 |
| Tru1I | TTAA | 4 cut(s) | 209, 315, 690, 890 |
| Tru9I | TTAA | 4 cut(s) | 209, 315, 690, 890 |
| TscAI | CASTG | 4 cut(s) | 208, 483, 664, 1705 |
| TseFI | GTSAC | 1 cut(s) | 1087 |
| TseI | GCWGC | 2 cut(s) | 1351, 1441 |
| Tsp45I | GTSAC | 1 cut(s) | 1087 |
| TspDTI | ATGAA | 6 cut(s) | 1096, 1126, 1146, 1475, 1695, 1788 |
| TspGWI | ACGGA | 3 cut(s) | 152, 811, 1508 |
| TspRI | CASTG | 4 cut(s) | 208, 483, 664, 1705 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1411 |
| VneI | GTGCAC | 2 cut(s) | 105, 952 |
| XapI | RAATTY | 5 cut(s) | 412, 1133, 1225, 1296, 1389 |
| XbaI | TCTAGA | 1 cut(s) | 281 |
| XceI | RCATGY | 4 cut(s) | 48, 124, 524, 863 |
| XhoI | CTCGAG | 3 cut(s) | 1031, 1217, 1672 |
| XmiI | GTMKAC | 1 cut(s) | 718 |
| XspI | CTAG | 5 cut(s) | 282, 501, 534, 1047, 1617 |
| Zsp2I | ATGCAT | 1 cut(s) | 231 |