Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001632

Physical Location & Seq

Genomic Coordinates Reverse (-)

17129224 .. 17132622

Gene Structure 3399 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g13550.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGACAGACCCTGTGATACATGTGCTGGATTTACTGATCAAGGCATTGCTTTTGAAGAAGTGATTGTAACATGCTCTAAATGCAGAGTAGCTCGTCAACATATTTATTGCATGCGGGTTAATCTTTCCCTGGACGAGGACTGGGATCCAGACAATTGGTTATGTGAATCATGTGAAGAAGGCAATGGGATGCTTTTTCCAAACTCTAGAATTCAGGAAGACACATTAGAATCATTAAACGATAGAAGCCGCTATGATACCATGCATTTAGCAGGTGCCAGCACAAGTAATTGTTCAGGGTGGCAAGCTCACTCCAAAAGGCAAAAGTCTGTCGTGAGTGAAAAGGTTAAGTTCATTACAAATGAAGAAGTCAGGAGGCTATCTTCGGCAGACCAGCCTCAGATGACTCCTGTTGGGTACAAAACTGTTACTCCAAAGTCTCCTGGTTCAGGGGTTAAAGTAAATCCTAGATTTATACGTTCTGAAGTTGCGATGCCTCATAGACGTAGTAGGCCGCCCAAGATGCAAAACATCTCAAAGATCAATCAGCAAGTATCTCAAAATTTTAAACATTCACAAGCTGATGCATTCATTCCTGCAACAGATGTGAAACTTCTAAGGAGGAGACGGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3

Protein Analysis

212

Amino Acids

24.02

Weight (kDa)

8.95

Isoelectric Point (pI)

61.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001632)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61090 AT5G61090 AT5G61120 AT5G61120 AT5G61120
fragaria_vesca	FvH4_4g13540 FvH4_4g13550 FvH4_5g13930 FvH4_5g13940 FvH4_5g13940 FvH4_5g13940
malus_domestica	MD06G1202200.v1.1 MD14G1211300.v1.1
prunus_persica	Prupe.5G204200_v2.0.a1 Prupe.5G204200_v2.0.a1 Prupe.5G204400_v2.0.a1
pyrus_communis	pycom06g17820
rosa_chinensis	RchiOBHm_Chr4g0414551 RchiOBHm_Chr4g0414561 RchiOBHm_Chr4g0414571 RchiOBHm_Chr7g0183021
rosa_laevigata	RLG00000005087
rosa_multiflora	Rmu_co8299331.1_g000001 Rmu_sc0000808.1_g000022 Rmu_sc0001063.1_g000013 Rmu_sc0005196.1_g000002
rosa_roxburghii	Rroxscaffold_3G00240320 Rroxscaffold_3G00240450 Rroxscaffold_3G00270840
rosa_rugosa	Rorug06G0451800
rosa_samantha	Rh4AG186600 Rh4AG186700 Rh4BG173800 Rh4BG184200 Rh4CG197200 Rh4CG197500 Rh4DG181800 Rh4DG181900 Rh4DG183300 Rh7AG055300 Rh7AG324400 Rh7BG054700 Rh7BG309400 Rh7CG056000 Rh7CG341300 Rh7DG054800
rosa_wichuraiana	Rw4G015750 Rw7G027480 Rw7G028300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	263
Acc36I	ACCTGC	1 cut(s)	263
AccB1I	GGYRCC	1 cut(s)	275
AciI	CCGC	3 cut(s)	115, 250, 515
AclWI	GGATC	2 cut(s)	140, 153
AcsI	RAATTY	2 cut(s)	210, 562
AcuI	CTGAAG	1 cut(s)	504
AfaI	GTAC	1 cut(s)	419
AfiI	CCNNNNNNNGG	2 cut(s)	136, 449
AflIII	ACRYGT	1 cut(s)	20
AgsI	TTSAA	1 cut(s)	56
AjnI	CCWGG	2 cut(s)	129, 442
AluBI	AGCT	3 cut(s)	92, 308, 581
AluI	AGCT	3 cut(s)	92, 308, 581
Alw26I	GTCTC	2 cut(s)	444, 619
AlwI	GGATC	2 cut(s)	140, 153
AlwNI	CAGNNNCTG	1 cut(s)	12
AoxI	GGCC	1 cut(s)	512
ApoI	RAATTY	2 cut(s)	210, 562
BamHI	GGATCC	1 cut(s)	145
BanI	GGYRCC	1 cut(s)	275
BbsI	GAAGAC	1 cut(s)	225
BciT130I	CCWGG	2 cut(s)	131, 444
BclI	TGATCA	1 cut(s)	37
BcoDI	GTCTC	2 cut(s)	444, 619
BfaI	CTAG	2 cut(s)	207, 468
BfmI	CTRYAG	1 cut(s)	632
BfuAI	ACCTGC	1 cut(s)	263
BisI	GCNGC	2 cut(s)	250, 515
BlsI	GCNGC	2 cut(s)	251, 516
Bme1390I	CCNGG	2 cut(s)	131, 444
BmiI	GGNNCC	2 cut(s)	147, 277
BmrFI	CCNGG	2 cut(s)	131, 444
BmrI	ACTGGG	1 cut(s)	151
BmsI	GCATC	4 cut(s)	180, 483, 513, 574
BmuI	ACTGGG	1 cut(s)	151
BpiI	GAAGAC	1 cut(s)	225
BsaJI	CCNNGG	1 cut(s)	129
BsaXI	ACNNNNNCTCC	2 cut(s)	415, 445
Bsc4I	CCNNNNNNNGG	2 cut(s)	136, 449
Bse1I	ACTGG	1 cut(s)	146
Bse3DI	GCAATG	2 cut(s)	45, 190
BseBI	CCWGG	2 cut(s)	131, 444
BseDI	CCNNGG	1 cut(s)	129
BseGI	GGATG	1 cut(s)	195
BseLI	CCNNNNNNNGG	2 cut(s)	136, 449
BseMI	GCAATG	2 cut(s)	45, 190
BseMII	CTCAG	1 cut(s)	413
BseNI	ACTGG	1 cut(s)	146
BshFI	GGCC	1 cut(s)	514
BshNI	GGYRCC	1 cut(s)	275
BslI	CCNNNNNNNGG	2 cut(s)	136, 449
BsmAI	GTCTC	2 cut(s)	444, 619
BsmBI	CGTCTC	1 cut(s)	619
BsmI	GAATGC	1 cut(s)	587
BsnI	GGCC	1 cut(s)	514
Bsp143I	GATC	3 cut(s)	37, 145, 540
BspACI	CCGC	3 cut(s)	115, 250, 515
BspANI	GGCC	1 cut(s)	514
BspCNI	CTCAG	1 cut(s)	412
BspLI	GGNNCC	2 cut(s)	147, 277
BspMI	ACCTGC	1 cut(s)	263
BspPI	GGATC	2 cut(s)	140, 153
BspT107I	GGYRCC	1 cut(s)	275
BsrDI	GCAATG	2 cut(s)	45, 190
BsrI	ACTGG	1 cut(s)	146
BssECI	CCNNGG	1 cut(s)	129
BssMI	GATC	3 cut(s)	37, 145, 540
Bst2UI	CCWGG	2 cut(s)	131, 444
Bst4CI	ACNGT	1 cut(s)	427
BstC8I	GCNNGC	3 cut(s)	113, 280, 306
BstDEI	CTNAG	2 cut(s)	399, 617
BstENI	CCTNNNNNAGG	2 cut(s)	134, 447
BstF5I	GGATG	1 cut(s)	195
BstKTI	GATC	3 cut(s)	40, 148, 543
BstMAI	GTCTC	2 cut(s)	444, 619
BstMBI	GATC	3 cut(s)	37, 145, 540
BstMWI	GCNNNNNNNGC	2 cut(s)	81, 523
BstNI	CCWGG	2 cut(s)	131, 444
BstNSI	RCATGY	3 cut(s)	24, 75, 115
BstSCI	CCNGG	2 cut(s)	129, 442
BstSFI	CTRYAG	1 cut(s)	632
BstV2I	GAAGAC	1 cut(s)	225
BstX2I	RGATCY	1 cut(s)	145
BstXI	CCANNNNNNTGG	1 cut(s)	156
BstYI	RGATCY	1 cut(s)	145
BsuRI	GGCC	1 cut(s)	514
BtgZI	GCGATG	1 cut(s)	506
BtsCI	GGATG	1 cut(s)	195
BveI	ACCTGC	1 cut(s)	263
Cac8I	GCNNGC	3 cut(s)	113, 280, 306
CaiI	CAGNNNCTG	1 cut(s)	12
Csp6I	GTAC	1 cut(s)	418
CviAII	CATG	5 cut(s)	21, 72, 112, 171, 262
CviJI	RGCY	8 cut(s)	92, 249, 308, 379, 397, 514, 581, 631
CviKI_1	RGCY	8 cut(s)	92, 249, 308, 379, 397, 514, 581, 631
CviQI	GTAC	1 cut(s)	418
DdeI	CTNAG	2 cut(s)	399, 617
DpnI	GATC	3 cut(s)	39, 147, 542
DpnII	GATC	3 cut(s)	37, 145, 540
DraI	TTTAAA	1 cut(s)	568
Eco57I	CTGAAG	1 cut(s)	504
EcoNI	CCTNNNNNAGG	2 cut(s)	134, 447
EcoRI	GAATTC	1 cut(s)	210
EcoRII	CCWGG	2 cut(s)	129, 442
EcoT22I	ATGCAT	2 cut(s)	267, 589
Esp3I	CGTCTC	1 cut(s)	619
FaeI	CATG	5 cut(s)	24, 75, 115, 174, 265
FatI	CATG	5 cut(s)	20, 71, 111, 170, 261
FauI	CCCGC	1 cut(s)	108
FbaI	TGATCA	1 cut(s)	37
Fnu4HI	GCNGC	2 cut(s)	250, 515
FokI	GGATG	1 cut(s)	202
Fsp4HI	GCNGC	2 cut(s)	250, 515
FspBI	CTAG	2 cut(s)	207, 468
GluI	GCNGC	2 cut(s)	250, 515
HaeIII	GGCC	1 cut(s)	514
Hin1II	CATG	5 cut(s)	24, 75, 115, 174, 265
HincII	GTYRAC	1 cut(s)	98
HindII	GTYRAC	1 cut(s)	98
HinfI	GANTC	3 cut(s)	167, 230, 406
Hpy166II	GTNNAC	1 cut(s)	98
Hpy188I	TCNGA	2 cut(s)	402, 484
Hpy188III	TCNNGA	5 cut(s)	149, 207, 215, 334, 373
Hpy8I	GTNNAC	1 cut(s)	98
HpyAV	CCTTC	1 cut(s)	173
HpyCH4III	ACNGT	1 cut(s)	427
HpyCH4IV	ACGT	2 cut(s)	478, 505
HpyCH4V	TGCA	6 cut(s)	84, 111, 265, 526, 587, 599
HpyF10VI	GCNNNNNNNGC	2 cut(s)	81, 523
HpyF3I	CTNAG	2 cut(s)	399, 617
HpySE526I	ACGT	2 cut(s)	478, 505
Hsp92II	CATG	5 cut(s)	24, 75, 115, 174, 265
Ksp22I	TGATCA	1 cut(s)	37
Kzo9I	GATC	3 cut(s)	37, 145, 540
LweI	GCATC	4 cut(s)	180, 483, 513, 574
MaeI	CTAG	2 cut(s)	207, 468
MaeII	ACGT	2 cut(s)	478, 505
MaeIII	GTNAC	2 cut(s)	67, 427
MalI	GATC	3 cut(s)	39, 147, 542
MboI	GATC	3 cut(s)	37, 145, 540
MboII	GAAGA	5 cut(s)	68, 188, 230, 375, 377
MfeI	CAATTG	1 cut(s)	154
MflI	RGATCY	1 cut(s)	145
MluCI	AATT	4 cut(s)	154, 210, 289, 562
MlyI	GAGTC	1 cut(s)	400
MnlI	CCTC	5 cut(s)	130, 369, 408, 507, 615
Mph1103I	ATGCAT	2 cut(s)	267, 589
MseI	TTAA	5 cut(s)	120, 236, 348, 456, 567
MspR9I	CCNGG	2 cut(s)	131, 444
MunI	CAATTG	1 cut(s)	154
Mva1269I	GAATGC	1 cut(s)	587
MvaI	CCWGG	2 cut(s)	131, 444
MwoI	GCNNNNNNNGC	2 cut(s)	81, 523
NdeII	GATC	3 cut(s)	37, 145, 540
NlaIII	CATG	5 cut(s)	24, 75, 115, 174, 265
NlaIV	GGNNCC	2 cut(s)	147, 277
NsiI	ATGCAT	2 cut(s)	267, 589
NspI	RCATGY	3 cut(s)	24, 75, 115
PaeI	GCATGC	1 cut(s)	115
PaqCI	CACCTGC	1 cut(s)	263
PciI	ACATGT	1 cut(s)	20
PctI	GAATGC	1 cut(s)	587
PfeI	GAWTC	2 cut(s)	167, 230
PkrI	GCNGC	2 cut(s)	251, 516
PleI	GAGTC	1 cut(s)	400
PpsI	GAGTC	1 cut(s)	400
PscI	ACATGT	1 cut(s)	20
Psp6I	CCWGG	2 cut(s)	129, 442
PspGI	CCWGG	2 cut(s)	129, 442
PspN4I	GGNNCC	2 cut(s)	147, 277
PstNI	CAGNNNCTG	1 cut(s)	12
PsuI	RGATCY	1 cut(s)	145
RsaI	GTAC	1 cut(s)	419
RsaNI	GTAC	1 cut(s)	418
SaqAI	TTAA	5 cut(s)	120, 236, 348, 456, 567
SatI	GCNGC	2 cut(s)	250, 515
Sau3AI	GATC	3 cut(s)	37, 145, 540
SchI	GAGTC	1 cut(s)	400
ScrFI	CCNGG	2 cut(s)	131, 444
SetI	ASST	7 cut(s)	94, 277, 310, 348, 481, 508, 583
SfaNI	GCATC	4 cut(s)	180, 483, 513, 574
SfcI	CTRYAG	1 cut(s)	632
SphI	GCATGC	1 cut(s)	115
Sse9I	AATT	4 cut(s)	154, 210, 289, 562
SsiI	CCGC	3 cut(s)	115, 250, 515
SspMI	CTAG	2 cut(s)	207, 468
StyD4I	CCNGG	2 cut(s)	129, 442
TaaI	ACNGT	1 cut(s)	427
TaiI	ACGT	2 cut(s)	481, 508
TasI	AATT	4 cut(s)	154, 210, 289, 562
TauI	GCSGC	2 cut(s)	252, 517
TfiI	GAWTC	2 cut(s)	167, 230
Tru1I	TTAA	5 cut(s)	120, 236, 348, 456, 567
Tru9I	TTAA	5 cut(s)	120, 236, 348, 456, 567
TspDTI	ATGAA	3 cut(s)	343, 378, 580
XagI	CCTNNNNNAGG	2 cut(s)	134, 447
XapI	RAATTY	2 cut(s)	210, 562
XbaI	TCTAGA	1 cut(s)	206
XceI	RCATGY	3 cut(s)	24, 75, 115
XspI	CTAG	2 cut(s)	207, 468
Zsp2I	ATGCAT	2 cut(s)	267, 589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.