Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001632

Physical Location & Seq

Genomic Coordinates Reverse (-)

35565935 .. 35571645

Gene Structure 5711 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G027480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGGAGGAGGTGGATGAGATGGCTCCTGTGATTTTCCGTCGTTGCTTCACGGTGGATGATGGGATTGATGTAGATCTCGATTTCTTCTTCGAAAATCTCTATGGAAGATGTCAAGATTGTGGTTTGCTTACTCATGTGGGTTTACCATGTGCTGGGCCGCCCTTGCCGGCGGAGGTCAGGAGTGAACATTATTGCATGCGGGTTAATCTCTCCTTGGTTGAGGACTGGGATCCGGACAATTGGGTATGCGAATCATGTGAACAGGACAATGGGATGCTTTCTCCAAACTCTGGTATTAAGGAAGACACATTAGAGTCATCAACTGGTAGAGGCCACTATGATGGCATGCATTCAGCAGGTCCCAGCAGAAATTGTAATGGTTCAGGGTGGCAAGCTCACTCTAAGAAGCAAAAGCCTGTTGGGAATAGAAAAGTTAAGTTCATTACAAATGAAGAAGTCAGGAGGCTATCTTTGGCAAACCCGCCTCAGAAGACTCCTGTTGGGTACAAAACTGTTACTCCAAAGTCTCCTGTTTCCGGGGTTAAAGCAAATCCTAGCTTTATACATTCAGAAATTGCGATGCCTCGTAGCCATTGTAGGCCCCCCAAGATGCAAAGCATCTCAAAGATTAATCAGCAAGCATGTCAAAAATTAAAACATTCACAAGCTTCAAAAAAGAAGTCATCGACAGTTACAACATTGAGGAACTTTTCACCTATAACCAGTACAGGCAAGGGAGGCTTCATCATTCTCGATTCAGAAACACCTGCTCAATTCATTGGTGGATTCCAGGCACAACCTCCCTGTACTGTACATAATAAATCCTATGAATCAAGACAGACCTATGCTTTGCTGTTAGAGATCATGGATACCCAAAATTCAGTGACGAGGATTTACTTTAATGGAGTGGATGCTGTGGATTTGTTGATATTTACATCTAAACAGCTGCATTTGGAGAATACCATGACAAGTCCAAGTACAGAAAATTTCTTATGGAGAATTTTTGGTGAAAAGAATCATTGTCGAGCTGACATGGATGACAATGGTACTACTGTTGATATGGAAGTTGACATGGCAGGTGGAAAGATGTTGGGAAACGTTGATATAGTCGTTCCGAAAGGTTCATCCACCCCTTGTAGAAGGCCTGAGACTATCATGAAAGCAGTGCAGCAACTTTTGACTATTAAGAAGGAGGAGCATTCTTCATACCAGACCAGATTAAGAGTTCTAGATTCTACTATTAAACAATTGTTGGCATTTAACTCAGATATCATGAAGGATGAGCATTCTGCATCATTAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3

Protein Analysis

434

Amino Acids

48.32

Weight (kDa)

6.67

Isoelectric Point (pI)

45.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001632)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61090 AT5G61090 AT5G61120 AT5G61120 AT5G61120
fragaria_vesca	FvH4_4g13540 FvH4_4g13550 FvH4_5g13930 FvH4_5g13940 FvH4_5g13940 FvH4_5g13940
malus_domestica	MD06G1202200.v1.1 MD14G1211300.v1.1
prunus_persica	Prupe.5G204200_v2.0.a1 Prupe.5G204200_v2.0.a1 Prupe.5G204400_v2.0.a1
pyrus_communis	pycom06g17820
rosa_chinensis	RchiOBHm_Chr4g0414551 RchiOBHm_Chr4g0414561 RchiOBHm_Chr4g0414571 RchiOBHm_Chr7g0183021
rosa_laevigata	RLG00000005087
rosa_multiflora	Rmu_co8299331.1_g000001 Rmu_sc0000808.1_g000022 Rmu_sc0001063.1_g000013 Rmu_sc0005196.1_g000002
rosa_roxburghii	Rroxscaffold_3G00240320 Rroxscaffold_3G00240450 Rroxscaffold_3G00270840
rosa_rugosa	Rorug06G0451800
rosa_samantha	Rh4AG186600 Rh4AG186700 Rh4BG173800 Rh4BG184200 Rh4CG197200 Rh4CG197500 Rh4DG181800 Rh4DG181900 Rh4DG183300 Rh7AG055300 Rh7AG324400 Rh7BG054700 Rh7BG309400 Rh7CG056000 Rh7CG341300 Rh7DG054800
rosa_wichuraiana	Rw4G015750 Rw7G027480 Rw7G028300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	775, 1067
Acc36I	ACCTGC	3 cut(s)	347, 775, 1067
AccB7I	CCANNNNNTGG	2 cut(s)	152, 290
AccIII	TCCGGA	1 cut(s)	232
AciI	CCGC	4 cut(s)	158, 170, 199, 482
AclI	AACGTT	1 cut(s)	1098
AclWI	GGATC	2 cut(s)	224, 237
AcsI	RAATTY	3 cut(s)	877, 985, 999
AfaI	GTAC	6 cut(s)	506, 727, 808, 813, 979, 1048
AfiI	CCNNNNNNNGG	3 cut(s)	152, 290, 536
AgsI	TTSAA	1 cut(s)	672
AjnI	CCWGG	1 cut(s)	789
AluBI	AGCT	5 cut(s)	395, 558, 668, 946, 1028
AluI	AGCT	5 cut(s)	395, 558, 668, 946, 1028
Alw26I	GTCTC	2 cut(s)	531, 1142
AlwI	GGATC	2 cut(s)	224, 237
Aor13HI	TCCGGA	1 cut(s)	232
AoxI	GGCC	4 cut(s)	155, 331, 599, 1142
ApeKI	GCWGC	2 cut(s)	946, 1168
ApoI	RAATTY	3 cut(s)	877, 985, 999
ArsI	GACNNNNNNTTYG	4 cut(s)	665, 697, 832, 864
AseI	ATTAAT	1 cut(s)	630
AspS9I	GGNCC	3 cut(s)	155, 359, 600
AsuC2I	CCSGG	1 cut(s)	538
AsuHPI	GGTGA	2 cut(s)	705, 1019
AsuII	TTCGAA	1 cut(s)	90
AvaII	GGWCC	1 cut(s)	359
BaeI	ACNNNNGTAYC	2 cut(s)	1038, 1071
BamHI	GGATCC	1 cut(s)	229
BbsI	GAAGAC	2 cut(s)	309, 497
BbvI	GCAGC	2 cut(s)	933, 1180
BccI	CCATC	3 cut(s)	13, 53, 335
BciT130I	CCWGG	1 cut(s)	791
BciVI	GTATCC	1 cut(s)	862
BcnI	CCSGG	1 cut(s)	538
BcoDI	GTCTC	2 cut(s)	531, 1142
BfaI	CTAG	2 cut(s)	555, 1229
BfuAI	ACCTGC	3 cut(s)	347, 775, 1067
BfuI	GTATCC	1 cut(s)	862
BglII	AGATCT	1 cut(s)	73
BisI	GCNGC	3 cut(s)	158, 947, 1169
BlsI	GCNGC	3 cut(s)	159, 948, 1170
Bme1390I	CCNGG	2 cut(s)	538, 791
Bme18I	GGWCC	1 cut(s)	359
BmgT120I	GGNCC	3 cut(s)	155, 359, 600
BmiI	GGNNCC	4 cut(s)	24, 231, 361, 602
BmrFI	CCNGG	2 cut(s)	538, 791
BmrI	ACTGGG	1 cut(s)	235
BmsI	GCATC	6 cut(s)	264, 570, 600, 627, 901, 1301
BmuI	ACTGGG	1 cut(s)	235
BpiI	GAAGAC	2 cut(s)	309, 497
Bpu14I	TTCGAA	1 cut(s)	90
BpuMI	CCSGG	1 cut(s)	538
BsaBI	GATNNNNATC	1 cut(s)	72
BsaJI	CCNNGG	2 cut(s)	213, 537
BsaWI	WCCGGW	1 cut(s)	232
BsaXI	ACNNNNNCTCC	2 cut(s)	502, 532
Bsc4I	CCNNNNNNNGG	3 cut(s)	152, 290, 536
Bse118I	RCCGGY	1 cut(s)	166
Bse1I	ACTGG	3 cut(s)	230, 328, 723
Bse8I	GATNNNNATC	1 cut(s)	72
BseAI	TCCGGA	1 cut(s)	232
BseBI	CCWGG	1 cut(s)	791
BseDI	CCNNGG	2 cut(s)	213, 537
BseGI	GGATG	7 cut(s)	19, 61, 279, 916, 1042, 1124, 1285
BseJI	GATNNNNATC	1 cut(s)	72
BseLI	CCNNNNNNNGG	3 cut(s)	152, 290, 536
BseMII	CTCAG	3 cut(s)	500, 1137, 1278
BseNI	ACTGG	3 cut(s)	230, 328, 723
BseRI	GAGGAG	2 cut(s)	20, 1208
BseXI	GCAGC	2 cut(s)	933, 1180
BseYI	CCCAGC	2 cut(s)	152, 362
BsgI	GTGCAG	1 cut(s)	1187
BshFI	GGCC	4 cut(s)	157, 333, 601, 1144
BsiSI	CCGG	3 cut(s)	167, 233, 537
BslFI	GGGAC	1 cut(s)	345
BslI	CCNNNNNNNGG	3 cut(s)	152, 290, 536
BsmAI	GTCTC	2 cut(s)	531, 1142
BsmFI	GGGAC	1 cut(s)	345
BsmI	GAATGC	3 cut(s)	349, 1198, 1285
BsnI	GGCC	4 cut(s)	157, 333, 601, 1144
Bsp119I	TTCGAA	1 cut(s)	90
Bsp13I	TCCGGA	1 cut(s)	232
Bsp1407I	TGTACA	1 cut(s)	811
Bsp143I	GATC	3 cut(s)	73, 229, 861
BspACI	CCGC	4 cut(s)	158, 170, 199, 482
BspANI	GGCC	4 cut(s)	157, 333, 601, 1144
BspCNI	CTCAG	3 cut(s)	499, 1138, 1277
BspEI	TCCGGA	1 cut(s)	232
BspHI	TCATGA	2 cut(s)	1155, 1272
BspLI	GGNNCC	4 cut(s)	24, 231, 361, 602
BspMI	ACCTGC	3 cut(s)	347, 775, 1067
BspPI	GGATC	2 cut(s)	224, 237
BspT104I	TTCGAA	1 cut(s)	90
BsrFI	RCCGGY	1 cut(s)	166
BsrGI	TGTACA	1 cut(s)	811
BsrI	ACTGG	3 cut(s)	230, 328, 723
BssAI	RCCGGY	1 cut(s)	166
BssECI	CCNNGG	2 cut(s)	213, 537
BssMI	GATC	3 cut(s)	73, 229, 861
BssT1I	CCWWGG	1 cut(s)	213
Bst2UI	CCWGG	1 cut(s)	791
Bst4CI	ACNGT	5 cut(s)	52, 514, 691, 811, 1054
BstAUI	TGTACA	1 cut(s)	811
BstBI	TTCGAA	1 cut(s)	90
BstC8I	GCNNGC	5 cut(s)	168, 197, 347, 393, 639
BstDEI	CTNAG	4 cut(s)	402, 486, 1146, 1264
BstF5I	GGATG	7 cut(s)	19, 61, 279, 916, 1042, 1124, 1285
BstKTI	GATC	3 cut(s)	76, 232, 864
BstMAI	GTCTC	2 cut(s)	531, 1142
BstMBI	GATC	3 cut(s)	73, 229, 861
BstMWI	GCNNNNNNNGC	2 cut(s)	163, 738
BstNI	CCWGG	1 cut(s)	791
BstNSI	RCATGY	3 cut(s)	199, 349, 645
BstSCI	CCNGG	2 cut(s)	536, 789
BstV1I	GCAGC	2 cut(s)	933, 1180
BstV2I	GAAGAC	2 cut(s)	309, 497
BstX2I	RGATCY	2 cut(s)	73, 229
BstXI	CCANNNNNNTGG	1 cut(s)	341
BstYI	RGATCY	2 cut(s)	73, 229
BsuI	GTATCC	1 cut(s)	862
BsuRI	GGCC	4 cut(s)	157, 333, 601, 1144
BtgZI	GCGATG	1 cut(s)	593
BtsCI	GGATG	7 cut(s)	19, 61, 279, 916, 1042, 1124, 1285
BtsI	GCAGTG	1 cut(s)	1170
BtsIMutI	CAGTG	2 cut(s)	888, 1170
BveI	ACCTGC	3 cut(s)	347, 775, 1067
Cac8I	GCNNGC	5 cut(s)	168, 197, 347, 393, 639
CciI	TCATGA	2 cut(s)	1155, 1272
Cfr10I	RCCGGY	1 cut(s)	166
Cfr13I	GGNCC	3 cut(s)	155, 359, 600
Csp6I	GTAC	6 cut(s)	505, 726, 807, 812, 978, 1047
CviQI	GTAC	6 cut(s)	505, 726, 807, 812, 978, 1047
DdeI	CTNAG	4 cut(s)	402, 486, 1146, 1264
DpnI	GATC	3 cut(s)	75, 231, 863
DpnII	GATC	3 cut(s)	73, 229, 861
EciI	GGCGGA	1 cut(s)	185
Eco130I	CCWWGG	1 cut(s)	213
Eco147I	AGGCCT	1 cut(s)	1144
Eco32I	GATATC	1 cut(s)	1270
Eco47I	GGWCC	1 cut(s)	359
EcoO109I	RGGNCCY	2 cut(s)	359, 600
EcoRII	CCWGG	1 cut(s)	789
EcoRV	GATATC	1 cut(s)	1270
EcoT14I	CCWWGG	1 cut(s)	213
EcoT22I	ATGCAT	1 cut(s)	351
ErhI	CCWWGG	1 cut(s)	213
FalI	AAGNNNNNCTT	2 cut(s)	725, 757
FaqI	GGGAC	1 cut(s)	345
FauI	CCCGC	2 cut(s)	192, 489
Fnu4HI	GCNGC	3 cut(s)	158, 947, 1169
FokI	GGATG	7 cut(s)	26, 68, 286, 923, 1049, 1111, 1292
Fsp4HI	GCNGC	3 cut(s)	158, 947, 1169
FspBI	CTAG	2 cut(s)	555, 1229
GluI	GCNGC	3 cut(s)	158, 947, 1169
GsaI	CCCAGC	2 cut(s)	156, 366
HaeIII	GGCC	4 cut(s)	157, 333, 601, 1144
HapII	CCGG	3 cut(s)	167, 233, 537
HincII	GTYRAC	1 cut(s)	1069
HindII	GTYRAC	1 cut(s)	1069
HindIII	AAGCTT	1 cut(s)	666
HinfI	GANTC	8 cut(s)	251, 314, 493, 755, 786, 830, 1015, 1232
HpaII	CCGG	3 cut(s)	167, 233, 537
HphI	GGTGA	2 cut(s)	705, 1019
Hpy166II	GTNNAC	4 cut(s)	143, 185, 260, 1069
Hpy188I	TCNGA	5 cut(s)	489, 571, 760, 1116, 1267
Hpy8I	GTNNAC	4 cut(s)	143, 185, 260, 1069
Hpy99I	CGWCG	1 cut(s)	42
HpyAV	CCTTC	3 cut(s)	1134, 1183, 1270
HpyCH4III	ACNGT	5 cut(s)	52, 514, 691, 811, 1054
HpyCH4IV	ACGT	1 cut(s)	1098
HpyCH4V	TGCA	6 cut(s)	195, 349, 613, 949, 1168, 1292
HpyF10VI	GCNNNNNNNGC	2 cut(s)	163, 738
HpyF3I	CTNAG	4 cut(s)	402, 486, 1146, 1264
HpySE526I	ACGT	1 cut(s)	1098
Kpn2I	TCCGGA	1 cut(s)	232
KroI	GCCGGC	1 cut(s)	166
KroNI	GCCGGC	1 cut(s)	168
Kzo9I	GATC	3 cut(s)	73, 229, 861
LmnI	GCTCC	2 cut(s)	28, 1195
Lsp1109I	GCAGC	2 cut(s)	933, 1180
LweI	GCATC	6 cut(s)	264, 570, 600, 627, 901, 1301
MaeI	CTAG	2 cut(s)	555, 1229
MaeII	ACGT	1 cut(s)	1098
MaeIII	GTNAC	3 cut(s)	514, 691, 883
MalI	GATC	3 cut(s)	75, 231, 863
MboI	GATC	3 cut(s)	73, 229, 861
MboII	GAAGA	7 cut(s)	76, 79, 117, 314, 464, 502, 1194
MfeI	CAATTG	2 cut(s)	238, 1247
MflI	RGATCY	2 cut(s)	73, 229
MluCI	AATT	9 cut(s)	238, 370, 573, 650, 773, 877, 985, 999, 1247
MlyI	GAGTC	2 cut(s)	323, 487
Mph1103I	ATGCAT	1 cut(s)	351
MroI	TCCGGA	1 cut(s)	232
MroNI	GCCGGC	1 cut(s)	166
MslI	CAYNNNNRTG	1 cut(s)	339
MspA1I	CMGCKG	1 cut(s)	946
MspI	CCGG	3 cut(s)	167, 233, 537
MspR9I	CCNGG	2 cut(s)	538, 791
MunI	CAATTG	2 cut(s)	238, 1247
Mva1269I	GAATGC	3 cut(s)	349, 1198, 1285
MvaI	CCWGG	1 cut(s)	791
MwoI	GCNNNNNNNGC	2 cut(s)	163, 738
NaeI	GCCGGC	1 cut(s)	168
NciI	CCSGG	1 cut(s)	538
NdeII	GATC	3 cut(s)	73, 229, 861
NgoMIV	GCCGGC	1 cut(s)	166
NlaIV	GGNNCC	4 cut(s)	24, 231, 361, 602
NmuCI	GTSAC	1 cut(s)	883
NsiI	ATGCAT	1 cut(s)	351
NspI	RCATGY	3 cut(s)	199, 349, 645
NspV	TTCGAA	1 cut(s)	90
PaeI	GCATGC	2 cut(s)	199, 349
PagI	TCATGA	2 cut(s)	1155, 1272
PaqCI	CACCTGC	2 cut(s)	775, 1067
PceI	AGGCCT	1 cut(s)	1144
PctI	GAATGC	3 cut(s)	349, 1198, 1285
PdiI	GCCGGC	1 cut(s)	168
PfeI	GAWTC	6 cut(s)	251, 755, 786, 830, 1015, 1232
PflMI	CCANNNNNTGG	2 cut(s)	152, 290
PkrI	GCNGC	3 cut(s)	159, 948, 1170
PleI	GAGTC	2 cut(s)	322, 487
PpsI	GAGTC	2 cut(s)	322, 487
PpuMI	RGGWCCY	1 cut(s)	359
PshBI	ATTAAT	1 cut(s)	630
Psp1406I	AACGTT	1 cut(s)	1098
Psp5II	RGGWCCY	1 cut(s)	359
Psp6I	CCWGG	1 cut(s)	789
PspFI	CCCAGC	2 cut(s)	152, 362
PspGI	CCWGG	1 cut(s)	789
PspN4I	GGNNCC	4 cut(s)	24, 231, 361, 602
PspPI	GGNCC	3 cut(s)	155, 359, 600
PspPPI	RGGWCCY	1 cut(s)	359
PsuI	RGATCY	2 cut(s)	73, 229
PvuII	CAGCTG	1 cut(s)	946
RsaI	GTAC	6 cut(s)	506, 727, 808, 813, 979, 1048
RsaNI	GTAC	6 cut(s)	505, 726, 807, 812, 978, 1047
RseI	CAYNNNNRTG	1 cut(s)	339
SatI	GCNGC	3 cut(s)	158, 947, 1169
Sau3AI	GATC	3 cut(s)	73, 229, 861
Sau96I	GGNCC	3 cut(s)	155, 359, 600
SchI	GAGTC	2 cut(s)	323, 487
ScrFI	CCNGG	2 cut(s)	538, 791
SfaNI	GCATC	6 cut(s)	264, 570, 600, 627, 901, 1301
SfuI	TTCGAA	1 cut(s)	90
SinI	GGWCC	1 cut(s)	359
SmiMI	CAYNNNNRTG	1 cut(s)	339
SphI	GCATGC	2 cut(s)	199, 349
Sse9I	AATT	9 cut(s)	238, 370, 573, 650, 773, 877, 985, 999, 1247
SseBI	AGGCCT	1 cut(s)	1144
SsiI	CCGC	4 cut(s)	158, 170, 199, 482
SspMI	CTAG	2 cut(s)	555, 1229
StuI	AGGCCT	1 cut(s)	1144
StyD4I	CCNGG	2 cut(s)	536, 789
StyI	CCWWGG	1 cut(s)	213
TaaI	ACNGT	5 cut(s)	52, 514, 691, 811, 1054
TaiI	ACGT	1 cut(s)	1101
TaqI	TCGA	5 cut(s)	78, 90, 686, 753, 1024
TasI	AATT	9 cut(s)	238, 370, 573, 650, 773, 877, 985, 999, 1247
TatI	WGTACW	4 cut(s)	725, 806, 811, 977
TauI	GCSGC	1 cut(s)	160
TfiI	GAWTC	6 cut(s)	251, 755, 786, 830, 1015, 1232
TscAI	CASTG	2 cut(s)	888, 1170
TseFI	GTSAC	1 cut(s)	883
TseI	GCWGC	2 cut(s)	946, 1168
Tsp45I	GTSAC	1 cut(s)	883
TspDTI	ATGAA	9 cut(s)	430, 465, 733, 766, 843, 1113, 1172, 1194, 1289
TspGWI	ACGGA	1 cut(s)	26
TspRI	CASTG	2 cut(s)	888, 1170
Van91I	CCANNNNNTGG	2 cut(s)	152, 290
VpaK11BI	GGWCC	1 cut(s)	359
VspI	ATTAAT	1 cut(s)	630
XapI	RAATTY	3 cut(s)	877, 985, 999
XbaI	TCTAGA	1 cut(s)	1228
XceI	RCATGY	3 cut(s)	199, 349, 645
XspI	CTAG	2 cut(s)	555, 1229
Zsp2I	ATGCAT	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.