FvH4_4g13540

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0001632
Physical Location & Seq
Reverse (-)
17126629 .. 17129461
2833 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g13540.t1

Sequence Viewer

Length: 714 bp
ATGAGCTATGGTGGCAACACTTCTAAAGCTGAACATAATCATTCTGATGGTAGACAGAGAGACCCCCTGAATATGATTCCTAGTGTCCATTCATATCATTCATATTCTCCTGCTCTTCATCCTATCTGGAAGGGAGGCTTCATCATTCTCGATTCAGAAACTCCTGCTCAATTCATTGGTGGGTTCCAGGCTCAACCTCCCTGTACTGTTCATCGTAAAGCCTATGAGTTTTCACGAAAAATGCCTCCTGTCCTACGGGCCAATTTGCTTCCTAGATTGCTTCTTTGGGCTGATCCCTTCCAAGAGGAATGTCCTGATCTTCAAGATGTTGGACTGTACTTTTTCCCTGATGATAACATTGCTGGATCAAGAGAGACCTATGCTTTGCTGTTTGAGGTCATGGATACCCAAAATTCAGTGATGAGAATTTTCTTTGATGGAGTGGATGCTGTAGATTTGCTGATATTTACATCTACCCAGCTGCATTTTTACTCGCCGAACATTGTTACAAGTCCACGTACAGAAAATTTCTTATGGGGAATTTTTCGTGATAAAAATCATTGTCAAGCTGTCATAGATGACAACATAACTACTATTGATATGGAAGTTGACATGACAGGTGGAAAGATGGTGGGAACCGTTGATGTAGTGTTCCGAAAGACTCGTCCACCCCTTATAGAGAGCCTATCATGGAAGCATTACAACAACTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

238

Amino Acids

27.06

Weight (kDa)

5.52

Isoelectric Point (pI)

50.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPOC_AIPP2 PF23121 43 - 182 5.7e-35 AIPP2, SPOC-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 52
AclWI GGATC 2 cut(s) 287, 373
AcsI RAATTY 4 cut(s) 412, 426, 526, 540
AfaI GTAC 3 cut(s) 205, 338, 520
AgsI TTSAA 1 cut(s) 323
AjnI CCWGG 1 cut(s) 186
AluBI AGCT 4 cut(s) 6, 29, 481, 569
AluI AGCT 4 cut(s) 6, 29, 481, 569
Alw26I GTCTC 2 cut(s) 54, 368
AlwI GGATC 2 cut(s) 287, 373
AoxI GGCC 1 cut(s) 258
ApeKI GCWGC 1 cut(s) 481
ApoI RAATTY 4 cut(s) 412, 426, 526, 540
ArsI GACNNNNNNTTYG 4 cut(s) 367, 399, 649, 681
AspS9I GGNCC 1 cut(s) 258
BbvI GCAGC 1 cut(s) 468
BccI CCATC 3 cut(s) 41, 431, 622
BciT130I CCWGG 1 cut(s) 188
BciVI GTATCC 1 cut(s) 397
BcoDI GTCTC 2 cut(s) 54, 368
BfaI CTAG 2 cut(s) 81, 273
BfmI CTRYAG 1 cut(s) 450
BfuI GTATCC 1 cut(s) 397
BisI GCNGC 1 cut(s) 482
BlsI GCNGC 1 cut(s) 483
Bme1390I CCNGG 1 cut(s) 188
BmgT120I GGNCC 1 cut(s) 258
BmiI GGNNCC 2 cut(s) 185, 637
BmrFI CCNGG 1 cut(s) 188
BmsI GCATC 1 cut(s) 436
BsaAI YACGTR 1 cut(s) 518
BsaBI GATNNNNATC 1 cut(s) 555
BsaI GGTCTC 2 cut(s) 54, 368
Bse3DI GCAATG 1 cut(s) 357
Bse8I GATNNNNATC 1 cut(s) 555
BseBI CCWGG 1 cut(s) 188
BseGI GGATG 2 cut(s) 118, 451
BseJI GATNNNNATC 1 cut(s) 555
BseMI GCAATG 1 cut(s) 357
BseXI GCAGC 1 cut(s) 468
BseYI CCCAGC 1 cut(s) 477
BshFI GGCC 1 cut(s) 260
BsmAI GTCTC 2 cut(s) 54, 368
BsnI GGCC 1 cut(s) 260
Bso31I GGTCTC 2 cut(s) 54, 368
Bsp143I GATC 3 cut(s) 292, 316, 365
BspANI GGCC 1 cut(s) 260
BspLI GGNNCC 2 cut(s) 185, 637
BspPI GGATC 2 cut(s) 287, 373
BspQI GCTCTTC 1 cut(s) 120
BspTNI GGTCTC 2 cut(s) 54, 368
BsrDI GCAATG 1 cut(s) 357
BssMI GATC 3 cut(s) 292, 316, 365
Bst2UI CCWGG 1 cut(s) 188
Bst4CI ACNGT 3 cut(s) 208, 336, 640
Bst6I CTCTTC 1 cut(s) 120
BstBAI YACGTR 1 cut(s) 518
BstF5I GGATG 2 cut(s) 118, 451
BstKTI GATC 3 cut(s) 295, 319, 368
BstMAI GTCTC 2 cut(s) 54, 368
BstMBI GATC 3 cut(s) 292, 316, 365
BstMWI GCNNNNNNNGC 1 cut(s) 12
BstNI CCWGG 1 cut(s) 188
BstSCI CCNGG 1 cut(s) 186
BstSFI CTRYAG 1 cut(s) 450
BstV1I GCAGC 1 cut(s) 468
BsuI GTATCC 1 cut(s) 397
BsuRI GGCC 1 cut(s) 260
BtsCI GGATG 2 cut(s) 118, 451
BtsIMutI CAGTG 1 cut(s) 423
Cfr13I GGNCC 1 cut(s) 258
Csp6I GTAC 3 cut(s) 204, 337, 519
CviAII CATG 3 cut(s) 400, 613, 690
CviQI GTAC 3 cut(s) 204, 337, 519
DpnI GATC 3 cut(s) 294, 318, 367
DpnII GATC 3 cut(s) 292, 316, 365
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
Eco31I GGTCTC 2 cut(s) 54, 368
EcoRII CCWGG 1 cut(s) 186
FaeI CATG 3 cut(s) 403, 616, 693
FalI AAGNNNNNCTT 2 cut(s) 122, 154
FatI CATG 3 cut(s) 399, 612, 689
FblI GTMKAC 1 cut(s) 52
Fnu4HI GCNGC 1 cut(s) 482
FokI GGATG 2 cut(s) 105, 458
Fsp4HI GCNGC 1 cut(s) 482
FspBI CTAG 2 cut(s) 81, 273
GluI GCNGC 1 cut(s) 482
GsaI CCCAGC 1 cut(s) 481
HaeIII GGCC 1 cut(s) 260
Hin1II CATG 3 cut(s) 403, 616, 693
HincII GTYRAC 1 cut(s) 610
HindII GTYRAC 1 cut(s) 610
HinfI GANTC 3 cut(s) 76, 152, 661
Hpy166II GTNNAC 4 cut(s) 53, 515, 610, 668
Hpy188I TCNGA 3 cut(s) 46, 157, 656
Hpy188III TCNNGA 7 cut(s) 127, 149, 234, 314, 323, 369, 548
Hpy8I GTNNAC 4 cut(s) 53, 515, 610, 668
HpyAV CCTTC 2 cut(s) 124, 307
HpyCH4III ACNGT 3 cut(s) 208, 336, 640
HpyCH4IV ACGT 1 cut(s) 517
HpyCH4V TGCA 1 cut(s) 484
HpyF10VI GCNNNNNNNGC 1 cut(s) 12
HpySE526I ACGT 1 cut(s) 517
Hsp92II CATG 3 cut(s) 403, 616, 693
Kzo9I GATC 3 cut(s) 292, 316, 365
LguI GCTCTTC 1 cut(s) 120
Lsp1109I GCAGC 1 cut(s) 468
LweI GCATC 1 cut(s) 436
MaeI CTAG 2 cut(s) 81, 273
MaeII ACGT 1 cut(s) 517
MaeIII GTNAC 1 cut(s) 505
MalI GATC 3 cut(s) 294, 318, 367
MboI GATC 3 cut(s) 292, 316, 365
MboII GAAGA 2 cut(s) 107, 311
MluCI AATT 6 cut(s) 170, 262, 412, 426, 526, 540
MlyI GAGTC 1 cut(s) 655
MmeI TCCRAC 1 cut(s) 310
MnlI CCTC 5 cut(s) 128, 207, 255, 298, 388
MslI CAYNNNNRTG 1 cut(s) 45
MspA1I CMGCKG 1 cut(s) 481
MspR9I CCNGG 1 cut(s) 188
MvaI CCWGG 1 cut(s) 188
MwoI GCNNNNNNNGC 1 cut(s) 12
NdeII GATC 3 cut(s) 292, 316, 365
NlaIII CATG 3 cut(s) 403, 616, 693
NlaIV GGNNCC 2 cut(s) 185, 637
PciSI GCTCTTC 1 cut(s) 120
PfeI GAWTC 2 cut(s) 76, 152
PkrI GCNGC 1 cut(s) 483
PleI GAGTC 1 cut(s) 655
PpsI GAGTC 1 cut(s) 655
Ppu21I YACGTR 1 cut(s) 518
Psp6I CCWGG 1 cut(s) 186
PspFI CCCAGC 1 cut(s) 477
PspGI CCWGG 1 cut(s) 186
PspN4I GGNNCC 2 cut(s) 185, 637
PspPI GGNCC 1 cut(s) 258
PvuII CAGCTG 1 cut(s) 481
RsaI GTAC 3 cut(s) 205, 338, 520
RsaNI GTAC 3 cut(s) 204, 337, 519
RseI CAYNNNNRTG 1 cut(s) 45
SapI GCTCTTC 1 cut(s) 120
SatI GCNGC 1 cut(s) 482
Sau3AI GATC 3 cut(s) 292, 316, 365
Sau96I GGNCC 1 cut(s) 258
SchI GAGTC 1 cut(s) 655
ScrFI CCNGG 1 cut(s) 188
SetI ASST 9 cut(s) 8, 31, 199, 380, 399, 483, 520, 571, 622
SfaNI GCATC 1 cut(s) 436
SfcI CTRYAG 1 cut(s) 450
SmiMI CAYNNNNRTG 1 cut(s) 45
Sse9I AATT 6 cut(s) 170, 262, 412, 426, 526, 540
SspMI CTAG 2 cut(s) 81, 273
StyD4I CCNGG 1 cut(s) 186
TaaI ACNGT 3 cut(s) 208, 336, 640
TaiI ACGT 1 cut(s) 520
TaqI TCGA 1 cut(s) 150
TasI AATT 6 cut(s) 170, 262, 412, 426, 526, 540
TatI WGTACW 2 cut(s) 203, 336
TfiI GAWTC 2 cut(s) 76, 152
TscAI CASTG 1 cut(s) 423
TseI GCWGC 1 cut(s) 481
TspDTI ATGAA 6 cut(s) 81, 90, 107, 130, 163, 200
TspRI CASTG 1 cut(s) 423
XapI RAATTY 4 cut(s) 412, 426, 526, 540
XmiI GTMKAC 1 cut(s) 52
XspI CTAG 2 cut(s) 81, 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.