Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001632

Physical Location & Seq

Genomic Coordinates Forward (+)

29789718 .. 29811083

Gene Structure 21366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG309400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGTCTTATTCTACATCTGGGGAGCAACATGATCACTTGGCTACTCCACCTCCACCACCCTTAGTATCACCGCAATCCTCATCGCCGATTTGTTTCCGATTGCCGCGCAGAGTCGCCTCAAAATCCAAAATCGGTTATGTCGATGACATCGCGGTTAATCTCAATAAGGACAATGGGATGCTTTCTCCAAACTCTGGTATTAAGGAAGACACATTAGAGTCATCAACTGGTAGAGGCCACTATGATGGCATGCATTCAGCAGGTCCCAGCAGAAATTGTAATGGTTCAGGGTGGCAAGCTCACTCTAAGAAGCAAAAGCCTGTTGGGAATAGAAAAGTTAAAGCAGTGGCAATCTCATCAGCTGTTGGAGCTTGCCCATTTACAATGGCGACCAGTGCTCTGAGGAGGAACAATGTCGTCGCTTTCTCCAAGGAACACATACATGTTTGCAACATTCAATACCGTACAAAAAGGAAGCTTGCTGTGTGGAATGGCACATTATCTTTGCCCATAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3

Protein Analysis

172

Amino Acids

18.55

Weight (kDa)

9.93

Isoelectric Point (pI)

60.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001632)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61090 AT5G61090 AT5G61120 AT5G61120 AT5G61120
fragaria_vesca	FvH4_4g13540 FvH4_4g13550 FvH4_5g13930 FvH4_5g13940 FvH4_5g13940 FvH4_5g13940
malus_domestica	MD06G1202200.v1.1 MD14G1211300.v1.1
prunus_persica	Prupe.5G204200_v2.0.a1 Prupe.5G204200_v2.0.a1 Prupe.5G204400_v2.0.a1
pyrus_communis	pycom06g17820
rosa_chinensis	RchiOBHm_Chr4g0414551 RchiOBHm_Chr4g0414561 RchiOBHm_Chr4g0414571 RchiOBHm_Chr7g0183021
rosa_laevigata	RLG00000005087
rosa_multiflora	Rmu_co8299331.1_g000001 Rmu_sc0000808.1_g000022 Rmu_sc0001063.1_g000013 Rmu_sc0005196.1_g000002
rosa_roxburghii	Rroxscaffold_3G00240320 Rroxscaffold_3G00240450 Rroxscaffold_3G00270840
rosa_rugosa	Rorug06G0451800
rosa_samantha	Rh4AG186600 Rh4AG186700 Rh4BG173800 Rh4BG184200 Rh4CG197200 Rh4CG197500 Rh4DG181800 Rh4DG181900 Rh4DG183300 Rh7AG055300 Rh7AG324400 Rh7BG054700 Rh7BG309400 Rh7CG056000 Rh7CG341300 Rh7DG054800
rosa_wichuraiana	Rw4G015750 Rw7G027480 Rw7G028300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	251
AccB7I	CCANNNNNTGG	1 cut(s)	194
AccII	CGCG	2 cut(s)	106, 152
AciI	CCGC	3 cut(s)	71, 104, 152
AfaI	GTAC	1 cut(s)	466
AfiI	CCNNNNNNNGG	1 cut(s)	194
AflIII	ACRYGT	1 cut(s)	442
AgsI	TTSAA	1 cut(s)	458
AluBI	AGCT	5 cut(s)	299, 362, 371, 478, 516
AluI	AGCT	5 cut(s)	299, 362, 371, 478, 516
Alw21I	GWGCWC	1 cut(s)	400
AoxI	GGCC	1 cut(s)	235
AspLEI	GCGC	1 cut(s)	108
AspS9I	GGNCC	1 cut(s)	263
AsuHPI	GGTGA	1 cut(s)	60
AvaII	GGWCC	1 cut(s)	263
BbsI	GAAGAC	1 cut(s)	213
Bbv12I	GWGCWC	1 cut(s)	400
BccI	CCATC	1 cut(s)	239
BclI	TGATCA	1 cut(s)	31
BfuAI	ACCTGC	1 cut(s)	251
BisI	GCNGC	1 cut(s)	104
BlsI	GCNGC	1 cut(s)	105
Bme18I	GGWCC	1 cut(s)	263
BmgT120I	GGNCC	1 cut(s)	263
BmiI	GGNNCC	1 cut(s)	265
BmsI	GCATC	1 cut(s)	168
BpiI	GAAGAC	1 cut(s)	213
BsaJI	CCNNGG	1 cut(s)	429
BsaXI	ACNNNNNCTCC	2 cut(s)	34, 64
Bsc4I	CCNNNNNNNGG	1 cut(s)	194
Bse1I	ACTGG	2 cut(s)	232, 393
BseDI	CCNNGG	1 cut(s)	429
BseGI	GGATG	1 cut(s)	183
BseLI	CCNNNNNNNGG	1 cut(s)	194
BseMII	CTCAG	1 cut(s)	392
BseNI	ACTGG	2 cut(s)	232, 393
BseRI	GAGGAG	1 cut(s)	418
BseYI	CCCAGC	1 cut(s)	266
Bsh1236I	CGCG	2 cut(s)	106, 152
BshFI	GGCC	1 cut(s)	237
BsiHKAI	GWGCWC	1 cut(s)	400
BslFI	GGGAC	1 cut(s)	249
BslI	CCNNNNNNNGG	1 cut(s)	194
BsmFI	GGGAC	1 cut(s)	249
BsmI	GAATGC	1 cut(s)	253
BsnI	GGCC	1 cut(s)	237
Bsp1286I	GDGCHC	1 cut(s)	400
Bsp143I	GATC	1 cut(s)	31
BspACI	CCGC	3 cut(s)	71, 104, 152
BspANI	GGCC	1 cut(s)	237
BspCNI	CTCAG	1 cut(s)	393
BspFNI	CGCG	2 cut(s)	106, 152
BspLI	GGNNCC	1 cut(s)	265
BspMI	ACCTGC	1 cut(s)	251
BsrI	ACTGG	2 cut(s)	232, 393
BssECI	CCNNGG	1 cut(s)	429
BssMI	GATC	1 cut(s)	31
BssT1I	CCWWGG	1 cut(s)	429
Bst4CI	ACNGT	1 cut(s)	464
BstC8I	GCNNGC	4 cut(s)	251, 297, 373, 480
BstDEI	CTNAG	3 cut(s)	61, 306, 401
BstF5I	GGATG	1 cut(s)	183
BstFNI	CGCG	2 cut(s)	106, 152
BstHHI	GCGC	1 cut(s)	108
BstKTI	GATC	1 cut(s)	34
BstMBI	GATC	1 cut(s)	31
BstMWI	GCNNNNNNNGC	2 cut(s)	368, 395
BstNSI	RCATGY	2 cut(s)	253, 446
BstUI	CGCG	2 cut(s)	106, 152
BstV2I	GAAGAC	1 cut(s)	213
BstXI	CCANNNNNNTGG	1 cut(s)	245
BsuRI	GGCC	1 cut(s)	237
BtgZI	GCGATG	2 cut(s)	66, 133
BtsCI	GGATG	1 cut(s)	183
BtsI	GCAGTG	1 cut(s)	351
BtsIMutI	CAGTG	2 cut(s)	351, 400
BveI	ACCTGC	1 cut(s)	251
Cac8I	GCNNGC	4 cut(s)	251, 297, 373, 480
CfoI	GCGC	1 cut(s)	108
Cfr13I	GGNCC	1 cut(s)	263
Csp6I	GTAC	1 cut(s)	465
CviAII	CATG	3 cut(s)	29, 250, 443
CviJI	RGCY	8 cut(s)	41, 237, 299, 319, 362, 371, 478, 516
CviKI_1	RGCY	8 cut(s)	41, 237, 299, 319, 362, 371, 478, 516
CviQI	GTAC	1 cut(s)	465
DdeI	CTNAG	3 cut(s)	61, 306, 401
DpnI	GATC	1 cut(s)	33
DpnII	GATC	1 cut(s)	31
Eco130I	CCWWGG	1 cut(s)	429
Eco47I	GGWCC	1 cut(s)	263
EcoO109I	RGGNCCY	1 cut(s)	263
EcoT14I	CCWWGG	1 cut(s)	429
EcoT22I	ATGCAT	1 cut(s)	255
ErhI	CCWWGG	1 cut(s)	429
FaeI	CATG	3 cut(s)	32, 253, 446
FaiI	YATR	7 cut(s)	30, 138, 243, 251, 440, 444, 512
FaqI	GGGAC	1 cut(s)	249
FatI	CATG	3 cut(s)	28, 249, 442
FbaI	TGATCA	1 cut(s)	31
Fnu4HI	GCNGC	1 cut(s)	104
FokI	GGATG	1 cut(s)	190
Fsp4HI	GCNGC	1 cut(s)	104
GlaI	GCGC	1 cut(s)	107
GluI	GCNGC	1 cut(s)	104
GsaI	CCCAGC	1 cut(s)	270
HaeIII	GGCC	1 cut(s)	237
HhaI	GCGC	1 cut(s)	108
Hin1II	CATG	3 cut(s)	32, 253, 446
Hin6I	GCGC	1 cut(s)	106
HinP1I	GCGC	1 cut(s)	106
HindIII	AAGCTT	1 cut(s)	476
HinfI	GANTC	2 cut(s)	111, 218
HphI	GGTGA	1 cut(s)	60
Hpy188I	TCNGA	2 cut(s)	98, 402
Hpy99I	CGWCG	1 cut(s)	422
HpyCH4III	ACNGT	1 cut(s)	464
HpyCH4V	TGCA	2 cut(s)	253, 450
HpyF10VI	GCNNNNNNNGC	2 cut(s)	368, 395
HpyF3I	CTNAG	3 cut(s)	61, 306, 401
Hsp92II	CATG	3 cut(s)	32, 253, 446
HspAI	GCGC	1 cut(s)	106
Ksp22I	TGATCA	1 cut(s)	31
Kzo9I	GATC	1 cut(s)	31
LmnI	GCTCC	2 cut(s)	22, 368
LpnPI	CCDG	8 cut(s)	3, 180, 213, 246, 273, 280, 333, 406
LweI	GCATC	1 cut(s)	168
MalI	GATC	1 cut(s)	33
MboI	GATC	1 cut(s)	31
MboII	GAAGA	1 cut(s)	218
MhlI	GDGCHC	1 cut(s)	400
MluCI	AATT	1 cut(s)	274
MlyI	GAGTC	2 cut(s)	120, 227
MmeI	TCCRAC	1 cut(s)	346
MnlI	CCTC	6 cut(s)	60, 88, 127, 227, 396, 399
Mph1103I	ATGCAT	1 cut(s)	255
MseI	TTAA	3 cut(s)	156, 201, 339
MslI	CAYNNNNRTG	2 cut(s)	243, 441
MspA1I	CMGCKG	1 cut(s)	362
Mva1269I	GAATGC	1 cut(s)	253
MvnI	CGCG	2 cut(s)	106, 152
MwoI	GCNNNNNNNGC	2 cut(s)	368, 395
NdeII	GATC	1 cut(s)	31
NlaIII	CATG	3 cut(s)	32, 253, 446
NlaIV	GGNNCC	1 cut(s)	265
NsiI	ATGCAT	1 cut(s)	255
NspI	RCATGY	2 cut(s)	253, 446
PaeI	GCATGC	1 cut(s)	253
PciI	ACATGT	1 cut(s)	442
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PctI	GAATGC	1 cut(s)	253
PflMI	CCANNNNNTGG	1 cut(s)	194
PkrI	GCNGC	1 cut(s)	105
PleI	GAGTC	2 cut(s)	119, 226
PpsI	GAGTC	2 cut(s)	119, 226
PpuMI	RGGWCCY	1 cut(s)	263
PscI	ACATGT	1 cut(s)	442
Psp5II	RGGWCCY	1 cut(s)	263
PspFI	CCCAGC	1 cut(s)	266
PspN4I	GGNNCC	1 cut(s)	265
PspPI	GGNCC	1 cut(s)	263
PspPPI	RGGWCCY	1 cut(s)	263
PvuII	CAGCTG	1 cut(s)	362
RsaI	GTAC	1 cut(s)	466
RsaNI	GTAC	1 cut(s)	465
RseI	CAYNNNNRTG	2 cut(s)	243, 441
SaqAI	TTAA	3 cut(s)	156, 201, 339
SatI	GCNGC	1 cut(s)	104
Sau3AI	GATC	1 cut(s)	31
Sau96I	GGNCC	1 cut(s)	263
SchI	GAGTC	2 cut(s)	120, 227
SduI	GDGCHC	1 cut(s)	400
SetI	ASST	7 cut(s)	52, 265, 301, 364, 373, 480, 518
SfaNI	GCATC	1 cut(s)	168
SinI	GGWCC	1 cut(s)	263
SmiMI	CAYNNNNRTG	2 cut(s)	243, 441
SphI	GCATGC	1 cut(s)	253
Sse9I	AATT	1 cut(s)	274
SsiI	CCGC	3 cut(s)	71, 104, 152
StyI	CCWWGG	1 cut(s)	429
TaaI	ACNGT	1 cut(s)	464
TaqI	TCGA	1 cut(s)	141
TasI	AATT	1 cut(s)	274
TauI	GCSGC	1 cut(s)	106
Tru1I	TTAA	3 cut(s)	156, 201, 339
Tru9I	TTAA	3 cut(s)	156, 201, 339
TscAI	CASTG	2 cut(s)	351, 400
TspRI	CASTG	2 cut(s)	351, 400
Van91I	CCANNNNNTGG	1 cut(s)	194
VpaK11BI	GGWCC	1 cut(s)	263
XceI	RCATGY	2 cut(s)	253, 446
Zsp2I	ATGCAT	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.